RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 FBXO3Q9UK99 471 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 ANKRD31Q8N7Z5 1873 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 NFE2L2Q16236 605 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 TRMT2AQ8IZ69 625 aaKnown RBP9.79□□□□□ -0.84
USP4-211ENST00000485450 TRIM35Q9UPQ4 493 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 SULT6B1Q6IMI4 303 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 PHACTR3Q96KR7 559 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 SLC52A2Q9HAB3 445 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 NLRP2Q9NX02 1062 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 CNTNAP4Q9C0A0 1308 aa9.79□□□□□ -0.84
USP4-211ENST00000485450 RAPGEF4Q8WZA2 1011 aa9.78□□□□□ -0.84
USP4-211ENST00000485450 RUNDC1Q96C34 613 aa9.78□□□□□ -0.84
USP4-211ENST00000485450 MRS2Q9HD23 443 aa9.78□□□□□ -0.84
USP4-211ENST00000485450 CANXP27824 592 aaKnown RBP9.77□□□□□ -0.84
USP4-211ENST00000485450 RC3H1Q5TC82 1133 aaKnown RBP9.77□□□□□ -0.84
USP4-211ENST00000485450 IL17REQ8NFR9 667 aa9.77□□□□□ -0.84
USP4-211ENST00000485450 ZNF646O15015 1829 aaPredicted RBP9.77□□□□□ -0.85
USP4-211ENST00000485450 LTBP1Q14766 1721 aa9.77□□□□□ -0.85
USP4-211ENST00000485450 GNAT3A8MTJ3 354 aa9.76□□□□□ -0.85
USP4-211ENST00000485450 USHBP1Q8N6Y0 703 aa9.76□□□□□ -0.85
USP4-211ENST00000485450 COL11A2P13942 1736 aaPredicted RBP9.76□□□□□ -0.85
USP4-211ENST00000485450 LRP10Q7Z4F1 713 aa9.76□□□□□ -0.85
USP4-211ENST00000485450 TEX2Q8IWB9 1127 aa9.76□□□□□ -0.85
USP4-211ENST00000485450 FTSJ3Q8IY81 847 aaKnown RBP9.75□□□□□ -0.85
USP4-211ENST00000485450 PLCD3Q8N3E9 789 aa9.75□□□□□ -0.85
USP4-211ENST00000485450 PIGBQ92521 554 aa9.75□□□□□ -0.85
USP4-211ENST00000485450 ATG3Q9NT62 314 aa9.75□□□□□ -0.85
USP4-211ENST00000485450 PALLDQ8WX93 1383 aa9.75□□□□□ -0.85
USP4-211ENST00000485450 HOXB7P09629 217 aa9.75□□□□□ -0.85
USP4-211ENST00000485450 PRKAR2BP31323 418 aa9.75□□□□□ -0.85
USP4-211ENST00000485450 RNF216Q9NWF9 866 aaPredicted RBP9.75□□□□□ -0.85
USP4-211ENST00000485450 ZHX1Q9UKY1 873 aaPredicted RBP9.75□□□□□ -0.85
USP4-211ENST00000485450 ADAMTS8Q9UP79 889 aa9.75□□□□□ -0.85
USP4-211ENST00000485450 FRAT2O75474 233 aaPredicted RBP9.74□□□□□ -0.85
USP4-211ENST00000485450 TMPOP42166 694 aaKnown RBP9.74□□□□□ -0.85
USP4-211ENST00000485450 SLC4A9Q96Q91 983 aa9.74□□□□□ -0.85
USP4-211ENST00000485450 SMARCC1Q92922 1105 aaPredicted RBP9.74□□□□□ -0.85
USP4-211ENST00000485450 CSB-PGBD3P0DP91 1061 aa9.74□□□□□ -0.85
USP4-211ENST00000485450 PXDNLA1KZ92 1463 aa9.74□□□□□ -0.85
USP4-211ENST00000485450 ERBB4Q15303 1308 aa9.74□□□□□ -0.85
USP4-211ENST00000485450 CHL1O00533 1208 aa9.73□□□□□ -0.85
USP4-211ENST00000485450 L1TD1Q5T7N2 865 aaKnown RBP9.73□□□□□ -0.85
USP4-211ENST00000485450 SGIP1Q9BQI5 828 aa9.73□□□□□ -0.85
USP4-211ENST00000485450 DHX30Q7L2E3 1194 aaKnown RBP eCLIP9.73□□□□□ -0.85
USP4-211ENST00000485450 PTF1AQ7RTS3 328 aa9.73□□□□□ -0.85
USP4-211ENST00000485450 PDE3BQ13370 1112 aa9.73□□□□□ -0.85
USP4-211ENST00000485450 KCNG1Q9UIX4 513 aa9.73□□□□□ -0.85
USP4-211ENST00000485450 VGLL3A8MV65 326 aa9.72□□□□□ -0.85
USP4-211ENST00000485450 WDR63Q8IWG1 891 aa9.72□□□□□ -0.85
USP4-211ENST00000485450 MYH3P11055 1940 aa9.72□□□□□ -0.85
USP4-211ENST00000485450 LMOD3Q0VAK6 560 aa9.72□□□□□ -0.85
USP4-211ENST00000485450 LRRC4BQ9NT99 713 aa9.72□□□□□ -0.85
USP4-211ENST00000485450 ZNF530Q6P9A1 599 aaPredicted RBP9.71□□□□□ -0.85
USP4-211ENST00000485450 SMAP1Q8IYB5 467 aaPredicted RBP9.71□□□□□ -0.85
USP4-211ENST00000485450 ATP10DQ9P241 1426 aa9.71□□□□□ -0.86
USP4-211ENST00000485450 KCNQ2O43526 872 aa9.71□□□□□ -0.86
USP4-211ENST00000485450 BRPF1P55201 1214 aaPredicted RBP9.71□□□□□ -0.86
USP4-211ENST00000485450 IFT57Q9NWB7 429 aa9.71□□□□□ -0.86
USP4-211ENST00000485450 TNRC6CQ9HCJ0 1690 aaKnown RBP9.71□□□□□ -0.86
USP4-211ENST00000485450 TNNT2P45379 298 aaPredicted RBP9.7□□□□□ -0.86
USP4-211ENST00000485450 LGR6Q9HBX8 967 aa9.7□□□□□ -0.86
USP4-211ENST00000485450 ADRA2BP18089 450 aa9.7□□□□□ -0.86
USP4-211ENST00000485450 SLC4A3P48751 1232 aa9.7□□□□□ -0.86
USP4-211ENST00000485450 RIPK4P57078 832 aa9.7□□□□□ -0.86
USP4-211ENST00000485450 SOX12O15370 315 aa9.69□□□□□ -0.86
USP4-211ENST00000485450 HMOX1P09601 288 aa9.69□□□□□ -0.86
USP4-211ENST00000485450 EXOC6Q8TAG9 804 aa9.69□□□□□ -0.86
USP4-211ENST00000485450 CFAP44Q96MT7 982 aa9.69□□□□□ -0.86
USP4-211ENST00000485450 POLR3GLQ9BT43 218 aa9.69□□□□□ -0.86
USP4-211ENST00000485450 C10orf71Q711Q0 1435 aa9.69□□□□□ -0.86
USP4-211ENST00000485450 PRIM1P49642 420 aaKnown RBP9.68□□□□□ -0.86
USP4-211ENST00000485450 RRP1P56182 461 aaKnown RBP9.68□□□□□ -0.86
USP4-211ENST00000485450 INTS5Q6P9B9 1019 aaKnown RBP9.68□□□□□ -0.86
USP4-211ENST00000485450 LTV1Q96GA3 475 aaPredicted RBP9.68□□□□□ -0.86
USP4-211ENST00000485450 PSME4Q14997 1843 aa9.68□□□□□ -0.86
USP4-211ENST00000485450 U2AF1L5P0DN76 240 aaPredicted RBP9.68□□□□□ -0.86
USP4-211ENST00000485450 BAG6P46379 1132 aa9.68□□□□□ -0.86
USP4-211ENST00000485450 EIF4A1P60842 406 aaKnown RBP9.68□□□□□ -0.86
USP4-211ENST00000485450 U2AF1Q01081 240 aaKnown RBP eCLIP9.68□□□□□ -0.86
USP4-211ENST00000485450 TXNRD1Q16881 649 aa9.68□□□□□ -0.86
USP4-211ENST00000485450 DICER1Q9UPY3 1922 aaKnown RBP9.68□□□□□ -0.86
USP4-211ENST00000485450 C1orf141Q5JVX7 400 aa9.68□□□□□ -0.86
USP4-211ENST00000485450 ZNF790Q6PG37 636 aa9.68□□□□□ -0.86
USP4-211ENST00000485450 ARAP2Q8WZ64 1704 aa9.68□□□□□ -0.86
USP4-211ENST00000485450 PNPLA7Q6ZV29 1317 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 TRIM37O94972 964 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 CYP19A1P11511 503 aaPredicted RBP9.67□□□□□ -0.86
USP4-211ENST00000485450 SSFA2P28290 1259 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 TAF7Q15545 349 aaPredicted RBP9.67□□□□□ -0.86
USP4-211ENST00000485450 UTP14CQ5TAP6 766 aaKnown RBP9.67□□□□□ -0.86
USP4-211ENST00000485450 DMTNQ08495 405 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 ITPK1Q13572 414 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 WWC1Q8IX03 1113 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 SNED1Q8TER0 1413 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 COL15A1P39059 1388 aa9.67□□□□□ -0.86
USP4-211ENST00000485450 LINC00116Q8NCU8 138 aa9.66□□□□□ -0.86
USP4-211ENST00000485450 FER1L6Q2WGJ9 1857 aa9.66□□□□□ -0.86
USP4-211ENST00000485450 TEX13AQ9BXU3 409 aaPredicted RBP9.66□□□□□ -0.86
USP4-211ENST00000485450 TMOD3Q9NYL9 352 aa9.66□□□□□ -0.86
USP4-211ENST00000485450 ZSCAN20P17040 1043 aaPredicted RBP9.66□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 207 ms