RNA–Protein interactions for RNA: ENST00000475549.1

HDAC3-207, Transcript of histone deacetylase 3, humanhuman

TSL 2

Gene HDAC3, Length 297 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-207ENST00000475549 PRKAR2BP31323 418 aa9.46□□□□□ -0.9
HDAC3-207ENST00000475549 NFIXQ14938 502 aa9.46□□□□□ -0.9
HDAC3-207ENST00000475549 ZNF790Q6PG37 636 aa9.46□□□□□ -0.9
HDAC3-207ENST00000475549 NARFQ9UHQ1 456 aa9.46□□□□□ -0.9
HDAC3-207ENST00000475549 MYH14Q7Z406 1995 aaKnown RBP9.46□□□□□ -0.9
HDAC3-207ENST00000475549 COL5A3P25940 1745 aaPredicted RBP9.45□□□□□ -0.9
HDAC3-207ENST00000475549 ZPR1O75312 459 aa9.45□□□□□ -0.9
HDAC3-207ENST00000475549 EIF5P55010 431 aaKnown RBP9.45□□□□□ -0.9
HDAC3-207ENST00000475549 ARHGAP27Q6ZUM4 889 aa9.45□□□□□ -0.9
HDAC3-207ENST00000475549 GAS2L2Q8NHY3 880 aa9.45□□□□□ -0.9
HDAC3-207ENST00000475549 GPBP1L1Q9HC44 474 aaPredicted RBP9.45□□□□□ -0.9
HDAC3-207ENST00000475549 CEMIPQ8WUJ3 1361 aa9.45□□□□□ -0.9
HDAC3-207ENST00000475549 KIF3CO14782 793 aa9.44□□□□□ -0.9
HDAC3-207ENST00000475549 FCHSD2O94868 740 aa9.44□□□□□ -0.9
HDAC3-207ENST00000475549 CANXP27824 592 aaKnown RBP9.44□□□□□ -0.9
HDAC3-207ENST00000475549 PIM2Q9P1W9 311 aa9.44□□□□□ -0.9
HDAC3-207ENST00000475549 ADAMTS7Q9UKP4 1686 aa9.44□□□□□ -0.9
HDAC3-207ENST00000475549 TJP1Q07157 1748 aa9.44□□□□□ -0.9
HDAC3-207ENST00000475549 CHD4Q14839 1912 aa9.43□□□□□ -0.9
HDAC3-207ENST00000475549 COL15A1P39059 1388 aa9.43□□□□□ -0.9
HDAC3-207ENST00000475549 PRAMEF22A3QJZ6 481 aa9.43□□□□□ -0.9
HDAC3-207ENST00000475549 STARD3NLO95772 234 aa9.43□□□□□ -0.9
HDAC3-207ENST00000475549 U2AF1L5P0DN76 240 aaPredicted RBP9.43□□□□□ -0.9
HDAC3-207ENST00000475549 U2AF1Q01081 240 aaKnown RBP eCLIP9.43□□□□□ -0.9
HDAC3-207ENST00000475549 MCM10Q7L590 875 aa9.43□□□□□ -0.9
HDAC3-207ENST00000475549 TTC5Q8N0Z6 440 aa9.43□□□□□ -0.9
HDAC3-207ENST00000475549 C4AP0C0L4 1744 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 KIAA1551Q9HCM1 1747 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 HEG1Q9ULI3 1381 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 A1BGP04217 495 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 SERPINB2P05120 415 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 PRELPP51888 382 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 TEFQ10587 303 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 DCTN1Q14203 1278 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 DALRD3Q5D0E6 543 aaKnown RBP9.42□□□□□ -0.9
HDAC3-207ENST00000475549 BICDL1Q6ZP65 573 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 TBC1D2BQ9UPU7 963 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 USP16Q9Y5T5 823 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 SCN11AQ9UI33 1791 aa9.42□□□□□ -0.9
HDAC3-207ENST00000475549 BTBD11A6QL63 1104 aa9.41□□□□□ -0.9
HDAC3-207ENST00000475549 HOXD11P31277 338 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-207ENST00000475549 PIP4K2AP48426 406 aaPredicted RBP9.41□□□□□ -0.9
HDAC3-207ENST00000475549 C9orf131Q5VYM1 1079 aa9.41□□□□□ -0.9
HDAC3-207ENST00000475549 TBC1D9BQ66K14 1250 aa9.41□□□□□ -0.9
HDAC3-207ENST00000475549 CFAP53Q96M91 514 aa9.41□□□□□ -0.9
HDAC3-207ENST00000475549 NUDCQ9Y266 331 aa9.41□□□□□ -0.9
HDAC3-207ENST00000475549 CARMIL3Q8ND23 1372 aa9.4□□□□□ -0.9
HDAC3-207ENST00000475549 IL6STP40189 918 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-207ENST00000475549 CCDC24Q8N4L8 307 aa9.4□□□□□ -0.9
HDAC3-207ENST00000475549 FMNL2Q96PY5 1086 aa9.4□□□□□ -0.9
HDAC3-207ENST00000475549 TEX13AQ9BXU3 409 aaPredicted RBP9.4□□□□□ -0.9
HDAC3-207ENST00000475549 NMRK2Q9NPI5 230 aa9.4□□□□□ -0.9
HDAC3-207ENST00000475549 MIS18AQ9NYP9 233 aa9.4□□□□□ -0.9
HDAC3-207ENST00000475549 KIF13BQ9NQT8 1826 aa9.4□□□□□ -0.91
HDAC3-207ENST00000475549 A0A087WZG4 1122 aa9.39□□□□□ -0.91
HDAC3-207ENST00000475549 NBPF26B4DH59 902 aa9.39□□□□□ -0.91
HDAC3-207ENST00000475549 CAMTA2O94983 1202 aa9.39□□□□□ -0.91
HDAC3-207ENST00000475549 NBPF10Q6P3W6 841 aaKnown RBP9.39□□□□□ -0.91
HDAC3-207ENST00000475549 NBPF15Q8N660 670 aa9.39□□□□□ -0.91
HDAC3-207ENST00000475549 PLEKHF1Q96S99 279 aa9.39□□□□□ -0.91
HDAC3-207ENST00000475549 N4BP2Q86UW6 1770 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-207ENST00000475549 HTATSF1O43719 755 aaKnown RBP9.38□□□□□ -0.91
HDAC3-207ENST00000475549 HSPA6P17066 643 aa9.38□□□□□ -0.91
HDAC3-207ENST00000475549 PRR5LQ6MZQ0 368 aa9.38□□□□□ -0.91
HDAC3-207ENST00000475549 ZNF330Q9Y3S2 320 aaPredicted RBP9.38□□□□□ -0.91
HDAC3-207ENST00000475549 SNRPA1P09661 255 aaKnown RBP9.37□□□□□ -0.91
HDAC3-207ENST00000475549 RASSF7Q02833 373 aa9.37□□□□□ -0.91
HDAC3-207ENST00000475549 C2CD5Q86YS7 1000 aa9.37□□□□□ -0.91
HDAC3-207ENST00000475549 TTLL6Q8N841 843 aa9.37□□□□□ -0.91
HDAC3-207ENST00000475549 THUMPD2Q9BTF0 503 aaKnown RBP9.37□□□□□ -0.91
HDAC3-207ENST00000475549 BRIP1Q9BX63 1249 aa9.37□□□□□ -0.91
HDAC3-207ENST00000475549 RNF181Q9P0P0 153 aa9.37□□□□□ -0.91
HDAC3-207ENST00000475549 H0YIN7 160 aa9.36□□□□□ -0.91
HDAC3-207ENST00000475549 TOMM70O94826 608 aa9.36□□□□□ -0.91
HDAC3-207ENST00000475549 TAF7Q15545 349 aaPredicted RBP9.36□□□□□ -0.91
HDAC3-207ENST00000475549 DZIP3Q86Y13 1208 aaKnown RBP9.36□□□□□ -0.91
HDAC3-207ENST00000475549 RTF1Q92541 710 aaKnown RBP9.36□□□□□ -0.91
HDAC3-207ENST00000475549 UBR2Q8IWV8 1755 aa9.36□□□□□ -0.91
HDAC3-207ENST00000475549 NFKBIEO00221 500 aa9.35□□□□□ -0.91
HDAC3-207ENST00000475549 SETDB2Q96T68 719 aa9.35□□□□□ -0.91
HDAC3-207ENST00000475549 RRAGCQ9HB90 399 aa9.35□□□□□ -0.91
HDAC3-207ENST00000475549 C21orf2O43822 256 aa9.34□□□□□ -0.91
HDAC3-207ENST00000475549 SRGNP10124 158 aa9.34□□□□□ -0.91
HDAC3-207ENST00000475549 LMNB1P20700 586 aa9.34□□□□□ -0.91
HDAC3-207ENST00000475549 PDE6BP35913 854 aa9.34□□□□□ -0.91
HDAC3-207ENST00000475549 HLFQ16534 295 aa9.34□□□□□ -0.91
HDAC3-207ENST00000475549 CLEC4GQ6UXB4 293 aa9.34□□□□□ -0.91
HDAC3-207ENST00000475549 DNAJC5GQ8N7S2 189 aa9.34□□□□□ -0.91
HDAC3-207ENST00000475549 ZNF622Q969S3 477 aaKnown RBP eCLIP9.34□□□□□ -0.91
HDAC3-207ENST00000475549 NRXN2Q9P2S2 1712 aa9.34□□□□□ -0.92
HDAC3-207ENST00000475549 KLRG2A4D1S0 409 aaPredicted RBP9.33□□□□□ -0.92
HDAC3-207ENST00000475549 EIF4A1P60842 406 aaKnown RBP9.33□□□□□ -0.92
HDAC3-207ENST00000475549 NFE2L2Q16236 605 aa9.33□□□□□ -0.92
HDAC3-207ENST00000475549 CNBD1Q8NA66 436 aa9.33□□□□□ -0.92
HDAC3-207ENST00000475549 C7orf43Q8WVR3 580 aa9.33□□□□□ -0.92
HDAC3-207ENST00000475549 SIPA1L3O60292 1781 aaPredicted RBP9.32□□□□□ -0.92
HDAC3-207ENST00000475549 BRCA1P38398 1863 aaKnown RBP9.32□□□□□ -0.92
HDAC3-207ENST00000475549 POTECB2RU33 542 aa9.32□□□□□ -0.92
HDAC3-207ENST00000475549 HTRA3P83110 453 aa9.32□□□□□ -0.92
HDAC3-207ENST00000475549 RBM46Q8TBY0 533 aaKnown RBP9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms