RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	MMP10	P09238	476 aa		31.7	■■■□□ 2.67
CPNE1-223	ENST00000475146	NLGN2	Q8NFZ4	835 aa		31.7	■■■□□ 2.67
CPNE1-223	ENST00000475146	THUMPD2	Q9BTF0	503 aa	Known RBP	31.7	■■■□□ 2.67
CPNE1-223	ENST00000475146	CANX	P27824	592 aa	Known RBP	31.69	■■■□□ 2.66
CPNE1-223	ENST00000475146	USP42	Q9H9J4	1324 aa	Known RBP	31.69	■■■□□ 2.66
CPNE1-223	ENST00000475146	COL15A1	P39059	1388 aa		31.68	■■■□□ 2.66
CPNE1-223	ENST00000475146	RIPK4	P57078	832 aa		31.67	■■■□□ 2.66
CPNE1-223	ENST00000475146	MIS18A	Q9NYP9	233 aa		31.67	■■■□□ 2.66
CPNE1-223	ENST00000475146	ADAMTS8	Q9UP79	889 aa		31.67	■■■□□ 2.66
CPNE1-223	ENST00000475146	TMPO	P42166	694 aa	Known RBP	31.66	■■■□□ 2.66
CPNE1-223	ENST00000475146	CD2AP	Q9Y5K6	639 aa		31.66	■■■□□ 2.66
CPNE1-223	ENST00000475146	ZPR1	O75312	459 aa		31.65	■■■□□ 2.66
CPNE1-223	ENST00000475146	PNISR	Q8TF01	805 aa	Known RBP	31.65	■■■□□ 2.66
CPNE1-223	ENST00000475146	RUNDC1	Q96C34	613 aa		31.65	■■■□□ 2.66
CPNE1-223	ENST00000475146	RRP7A	Q9Y3A4	280 aa	Known RBP	31.64	■■■□□ 2.66
CPNE1-223	ENST00000475146	LMOD3	Q0VAK6	560 aa		31.63	■■■□□ 2.65
CPNE1-223	ENST00000475146	PELP1	Q8IZL8	1130 aa	Known RBP	31.63	■■■□□ 2.65
CPNE1-223	ENST00000475146	ZNF330	Q9Y3S2	320 aa	Predicted RBP	31.63	■■■□□ 2.65
CPNE1-223	ENST00000475146	SNRPA1	P09661	255 aa	Known RBP	31.62	■■■□□ 2.65
CPNE1-223	ENST00000475146	FKBP8	Q14318	412 aa		31.62	■■■□□ 2.65
CPNE1-223	ENST00000475146	USPL1	Q5W0Q7	1092 aa		31.62	■■■□□ 2.65
CPNE1-223	ENST00000475146	NEUROD2	Q15784	382 aa		31.61	■■■□□ 2.65
CPNE1-223	ENST00000475146	GPR162	Q16538	588 aa		31.61	■■■□□ 2.65
CPNE1-223	ENST00000475146	PARP3	Q9Y6F1	533 aa		31.61	■■■□□ 2.65
CPNE1-223	ENST00000475146	PRAMEF22	A3QJZ6	481 aa		31.6	■■■□□ 2.65
CPNE1-223	ENST00000475146	ANP32C	O43423	234 aa		31.6	■■■□□ 2.65
CPNE1-223	ENST00000475146	A1BG	P04217	495 aa		31.6	■■■□□ 2.65
CPNE1-223	ENST00000475146	NARF	Q9UHQ1	456 aa		31.6	■■■□□ 2.65
CPNE1-223	ENST00000475146	USP16	Q9Y5T5	823 aa		31.6	■■■□□ 2.65
CPNE1-223	ENST00000475146	EIF5	P55010	431 aa	Known RBP	31.59	■■■□□ 2.65
CPNE1-223	ENST00000475146	KDM3B	Q7LBC6	1761 aa		31.58	■■■□□ 2.65
CPNE1-223	ENST00000475146		A0A087WZG4	1122 aa		31.58	■■■□□ 2.65
CPNE1-223	ENST00000475146	NPM2	Q86SE8	214 aa	Known RBP	31.57	■■■□□ 2.64
CPNE1-223	ENST00000475146	IL6ST	P40189	918 aa	Predicted RBP	31.56	■■■□□ 2.64
CPNE1-223	ENST00000475146	PIP4K2A	P48426	406 aa	Predicted RBP	31.54	■■■□□ 2.64
CPNE1-223	ENST00000475146	CCDC184	Q52MB2	194 aa		31.54	■■■□□ 2.64
CPNE1-223	ENST00000475146	TSPYL4	Q9UJ04	414 aa		31.54	■■■□□ 2.64
CPNE1-223	ENST00000475146	DDR1	Q08345	913 aa		31.53	■■■□□ 2.64
CPNE1-223	ENST00000475146	C10orf71	Q711Q0	1435 aa		31.52	■■■□□ 2.64
CPNE1-223	ENST00000475146	EIF4A1	P60842	406 aa	Known RBP	31.52	■■■□□ 2.64
CPNE1-223	ENST00000475146	BCL2L12	Q9HB09	334 aa		31.51	■■■□□ 2.63
CPNE1-223	ENST00000475146	TBC1D2B	Q9UPU7	963 aa		31.51	■■■□□ 2.63
CPNE1-223	ENST00000475146	LAMB4	A4D0S4	1761 aa		31.5	■■■□□ 2.63
CPNE1-223	ENST00000475146	YY1	P25490	414 aa		31.49	■■■□□ 2.63
CPNE1-223	ENST00000475146	TM4SF1	P30408	202 aa		31.49	■■■□□ 2.63
CPNE1-223	ENST00000475146	NFIX	Q14938	502 aa		31.49	■■■□□ 2.63
CPNE1-223	ENST00000475146	WWC3	Q9ULE0	1092 aa		31.49	■■■□□ 2.63
CPNE1-223	ENST00000475146	TRIM35	Q9UPQ4	493 aa		31.49	■■■□□ 2.63
CPNE1-223	ENST00000475146	SCN7A	Q01118	1682 aa		31.48	■■■□□ 2.63
CPNE1-223	ENST00000475146	KIF13B	Q9NQT8	1826 aa		31.48	■■■□□ 2.63
CPNE1-223	ENST00000475146	POLRMT	O00411	1230 aa	Known RBP	31.48	■■■□□ 2.63
CPNE1-223	ENST00000475146	GIGYF1	O75420	1035 aa	Predicted RBP	31.48	■■■□□ 2.63
CPNE1-223	ENST00000475146	YBX3	P16989	372 aa	Known RBP eCLIP	31.48	■■■□□ 2.63
CPNE1-223	ENST00000475146	MRS2	Q9HD23	443 aa		31.47	■■■□□ 2.63
CPNE1-223	ENST00000475146	APAF1	O14727	1248 aa		31.46	■■■□□ 2.63
CPNE1-223	ENST00000475146	BICDL1	Q6ZP65	573 aa		31.46	■■■□□ 2.63
CPNE1-223	ENST00000475146	DZIP3	Q86Y13	1208 aa	Known RBP	31.46	■■■□□ 2.63
CPNE1-223	ENST00000475146	BABAM1	Q9NWV8	329 aa		31.46	■■■□□ 2.63
CPNE1-223	ENST00000475146	PXDNL	A1KZ92	1463 aa		31.46	■■■□□ 2.63
CPNE1-223	ENST00000475146	LAS1L	Q9Y4W2	734 aa	Known RBP	31.45	■■■□□ 2.63
CPNE1-223	ENST00000475146	NBPF26	B4DH59	902 aa		31.44	■■■□□ 2.62
CPNE1-223	ENST00000475146	TGFB2	P61812	414 aa		31.44	■■■□□ 2.62
CPNE1-223	ENST00000475146	NBPF10	Q6P3W6	841 aa	Known RBP	31.44	■■■□□ 2.62
CPNE1-223	ENST00000475146	NBPF15	Q8N660	670 aa		31.44	■■■□□ 2.62
CPNE1-223	ENST00000475146	CAMTA2	O94983	1202 aa		31.43	■■■□□ 2.62
CPNE1-223	ENST00000475146	GRIN3B	O60391	1043 aa		31.42	■■■□□ 2.62
CPNE1-223	ENST00000475146	TBC1D9B	Q66K14	1250 aa		31.42	■■■□□ 2.62
CPNE1-223	ENST00000475146		A0A0G2JLW4	131 aa		31.41	■■■□□ 2.62
CPNE1-223	ENST00000475146	KIAA1551	Q9HCM1	1747 aa		31.41	■■■□□ 2.62
CPNE1-223	ENST00000475146	N4BP2	Q86UW6	1770 aa	Predicted RBP	31.4	■■■□□ 2.62
CPNE1-223	ENST00000475146	SERPINB2	P05120	415 aa		31.4	■■■□□ 2.62
CPNE1-223	ENST00000475146	BCOR	Q6W2J9	1755 aa		31.4	■■■□□ 2.62
CPNE1-223	ENST00000475146	DPEP1	P16444	411 aa		31.39	■■■□□ 2.62
CPNE1-223	ENST00000475146	CHL1	O00533	1208 aa		31.38	■■■□□ 2.61
CPNE1-223	ENST00000475146	AFDN	P55196	1824 aa	Known RBP	31.38	■■■□□ 2.61
CPNE1-223	ENST00000475146	CHD4	Q14839	1912 aa		31.37	■■■□□ 2.61
CPNE1-223	ENST00000475146	NGEF	Q8N5V2	710 aa		31.37	■■■□□ 2.61
CPNE1-223	ENST00000475146	ZNF652	Q9Y2D9	606 aa		31.36	■■■□□ 2.61
CPNE1-223	ENST00000475146	NRXN2	Q9P2S2	1712 aa		31.35	■■■□□ 2.61
CPNE1-223	ENST00000475146	CARMIL3	Q8ND23	1372 aa		31.35	■■■□□ 2.61
CPNE1-223	ENST00000475146	MYL6B	P14649	208 aa		31.35	■■■□□ 2.61
CPNE1-223	ENST00000475146	EIF2S2	P20042	333 aa	Known RBP	31.35	■■■□□ 2.61
CPNE1-223	ENST00000475146	SETDB2	Q96T68	719 aa		31.34	■■■□□ 2.61
CPNE1-223	ENST00000475146	BCS1L	Q9Y276	419 aa		31.33	■■■□□ 2.61
CPNE1-223	ENST00000475146	ERBB4	Q15303	1308 aa		31.32	■■■□□ 2.6
CPNE1-223	ENST00000475146	CALD1	Q05682	793 aa	Known RBP	31.32	■■■□□ 2.6
CPNE1-223	ENST00000475146	CLEC4G	Q6UXB4	293 aa		31.32	■■■□□ 2.6
CPNE1-223	ENST00000475146	CFAP44	Q96MT7	982 aa		31.32	■■■□□ 2.6
CPNE1-223	ENST00000475146	NPHP1	O15259	732 aa		31.31	■■■□□ 2.6
CPNE1-223	ENST00000475146	CHRNA5	P30532	468 aa		31.31	■■■□□ 2.6
CPNE1-223	ENST00000475146	KRT24	Q2M2I5	525 aa		31.31	■■■□□ 2.6
CPNE1-223	ENST00000475146	SENP3-EIF4A1	A0A087X0R7	540 aa		31.3	■■■□□ 2.6
CPNE1-223	ENST00000475146	KIF6	Q6ZMV9	814 aa		31.29	■■■□□ 2.6
CPNE1-223	ENST00000475146	NECTIN2	Q92692	538 aa		31.29	■■■□□ 2.6
CPNE1-223	ENST00000475146	PIM2	Q9P1W9	311 aa		31.29	■■■□□ 2.6
CPNE1-223	ENST00000475146	KCNA3	P22001	575 aa		31.28	■■■□□ 2.6
CPNE1-223	ENST00000475146	MBIP	Q9NS73	344 aa		31.28	■■■□□ 2.6
CPNE1-223	ENST00000475146	RGL2	O15211	777 aa		31.27	■■■□□ 2.6
CPNE1-223	ENST00000475146	TTLL7	Q6ZT98	887 aa		31.27	■■■□□ 2.6
CPNE1-223	ENST00000475146	CNBD1	Q8NA66	436 aa		31.27	■■■□□ 2.6

Retrieved 100 of 20,778 RNA–protein pairs in 66.9 ms