RNA–Protein interactions for RNA: ENST00000472217.1

USF1-204, Transcript of upstream transcription factor 1, humanhuman

TSL 2

Gene USF1, Length 1,097 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-204ENST00000472217 MCM10Q7L590 875 aa12.03□□□□□ -0.48
USF1-204ENST00000472217 BTBD11A6QL63 1104 aa12.02□□□□□ -0.49
USF1-204ENST00000472217 ZPR1O75312 459 aa12.02□□□□□ -0.49
USF1-204ENST00000472217 STARD3NLO95772 234 aa12.02□□□□□ -0.49
USF1-204ENST00000472217 TGFB2P61812 414 aa12.02□□□□□ -0.49
USF1-204ENST00000472217 RTF1Q92541 710 aaKnown RBP12.02□□□□□ -0.49
USF1-204ENST00000472217 FMNL2Q96PY5 1086 aa12.02□□□□□ -0.49
USF1-204ENST00000472217 SCN7AQ01118 1682 aa12.02□□□□□ -0.49
USF1-204ENST00000472217 BRCA1P38398 1863 aaKnown RBP12.02□□□□□ -0.49
USF1-204ENST00000472217 DLG5Q8TDM6 1919 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 A0A0G2JLW4 131 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 POLRMTO00411 1230 aaKnown RBP12.01□□□□□ -0.49
USF1-204ENST00000472217 KCNQ3O43525 872 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 TM4SF1P30408 202 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 DCTN1Q14203 1278 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 BCL2L12Q9HB09 334 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 NARFQ9UHQ1 456 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 UTRNP46939 3433 aa12.01□□□□□ -0.49
USF1-204ENST00000472217 NRXN2Q9P2S2 1712 aa12□□□□□ -0.49
USF1-204ENST00000472217 AFDNP55196 1824 aaKnown RBP12□□□□□ -0.49
USF1-204ENST00000472217 HTATSF1O43719 755 aaKnown RBP12□□□□□ -0.49
USF1-204ENST00000472217 DPEP1P16444 411 aa12□□□□□ -0.49
USF1-204ENST00000472217 EIF5P55010 431 aaKnown RBP12□□□□□ -0.49
USF1-204ENST00000472217 DDX10Q13206 875 aaKnown RBP12□□□□□ -0.49
USF1-204ENST00000472217 TEX13AQ9BXU3 409 aaPredicted RBP12□□□□□ -0.49
USF1-204ENST00000472217 NFIXQ14938 502 aa11.99□□□□□ -0.49
USF1-204ENST00000472217 RALBP1Q15311 655 aa11.99□□□□□ -0.49
USF1-204ENST00000472217 PLEKHF1Q96S99 279 aa11.99□□□□□ -0.49
USF1-204ENST00000472217 BCS1LQ9Y276 419 aa11.99□□□□□ -0.49
USF1-204ENST00000472217 ADCY9O60503 1353 aa11.99□□□□□ -0.49
USF1-204ENST00000472217 KDM3BQ7LBC6 1761 aa11.98□□□□□ -0.49
USF1-204ENST00000472217 ATP10DQ9P241 1426 aa11.98□□□□□ -0.49
USF1-204ENST00000472217 PRAMEF22A3QJZ6 481 aa11.98□□□□□ -0.49
USF1-204ENST00000472217 A1BGP04217 495 aa11.98□□□□□ -0.49
USF1-204ENST00000472217 NEFMP07197 916 aa11.98□□□□□ -0.49
USF1-204ENST00000472217 KCNA3P22001 575 aa11.98□□□□□ -0.49
USF1-204ENST00000472217 ZNF330Q9Y3S2 320 aaPredicted RBP11.98□□□□□ -0.49
USF1-204ENST00000472217 ARFGEF1Q9Y6D6 1849 aa11.97□□□□□ -0.49
USF1-204ENST00000472217 BCORQ6W2J9 1755 aa11.97□□□□□ -0.49
USF1-204ENST00000472217 A0A087WZG4 1122 aa11.97□□□□□ -0.49
USF1-204ENST00000472217 IL6STP40189 918 aaPredicted RBP11.97□□□□□ -0.49
USF1-204ENST00000472217 USP16Q9Y5T5 823 aa11.97□□□□□ -0.49
USF1-204ENST00000472217 LAMB4A4D0S4 1761 aa11.97□□□□□ -0.49
USF1-204ENST00000472217 MYBBP1AQ9BQG0 1328 aaKnown RBP11.96□□□□□ -0.49
USF1-204ENST00000472217 SERPINB2P05120 415 aa11.96□□□□□ -0.49
USF1-204ENST00000472217 SNRPA1P09661 255 aaKnown RBP11.96□□□□□ -0.49
USF1-204ENST00000472217 CHRNA5P30532 468 aa11.96□□□□□ -0.49
USF1-204ENST00000472217 PIP4K2AP48426 406 aaPredicted RBP11.96□□□□□ -0.49
USF1-204ENST00000472217 TAF7Q15545 349 aaPredicted RBP11.96□□□□□ -0.49
USF1-204ENST00000472217 NFE2L2Q16236 605 aa11.96□□□□□ -0.49
USF1-204ENST00000472217 TBC1D2BQ9UPU7 963 aa11.96□□□□□ -0.49
USF1-204ENST00000472217 DLEC1Q9Y238 1755 aa11.96□□□□□ -0.49
USF1-204ENST00000472217 GOLGB1Q14789 3259 aaKnown RBP11.96□□□□□ -0.49
USF1-204ENST00000472217 CARMIL3Q8ND23 1372 aa11.95□□□□□ -0.5
USF1-204ENST00000472217 MAPK8IP3Q9UPT6 1336 aa11.95□□□□□ -0.5
USF1-204ENST00000472217 TBC1D9BQ66K14 1250 aa11.95□□□□□ -0.5
USF1-204ENST00000472217 BICDL1Q6ZP65 573 aa11.95□□□□□ -0.5
USF1-204ENST00000472217 PNNQ9H307 717 aaKnown RBP11.95□□□□□ -0.5
USF1-204ENST00000472217 MIS18AQ9NYP9 233 aa11.95□□□□□ -0.5
USF1-204ENST00000472217 PIM2Q9P1W9 311 aa11.95□□□□□ -0.5
USF1-204ENST00000472217 GIGYF1O75420 1035 aaPredicted RBP11.94□□□□□ -0.5
USF1-204ENST00000472217 THUMPD2Q9BTF0 503 aaKnown RBP11.94□□□□□ -0.5
USF1-204ENST00000472217 ANKRD31Q8N7Z5 1873 aa11.93□□□□□ -0.5
USF1-204ENST00000472217 CAMTA2O94983 1202 aa11.93□□□□□ -0.5
USF1-204ENST00000472217 C1QTNF8P60827 252 aa11.93□□□□□ -0.5
USF1-204ENST00000472217 DALRD3Q5D0E6 543 aaKnown RBP11.93□□□□□ -0.5
USF1-204ENST00000472217 ARHGAP27Q6ZUM4 889 aa11.93□□□□□ -0.5
USF1-204ENST00000472217 NPM2Q86SE8 214 aaKnown RBP11.93□□□□□ -0.5
USF1-204ENST00000472217 DZIP3Q86Y13 1208 aaKnown RBP11.93□□□□□ -0.5
USF1-204ENST00000472217 COL11A2P13942 1736 aaPredicted RBP11.92□□□□□ -0.5
USF1-204ENST00000472217 NBPF26B4DH59 902 aa11.92□□□□□ -0.5
USF1-204ENST00000472217 NBPF10Q6P3W6 841 aaKnown RBP11.92□□□□□ -0.5
USF1-204ENST00000472217 NBPF15Q8N660 670 aa11.92□□□□□ -0.5
USF1-204ENST00000472217 PNISRQ8TF01 805 aaKnown RBP11.92□□□□□ -0.5
USF1-204ENST00000472217 ZNF526Q8TF50 670 aaPredicted RBP11.92□□□□□ -0.5
USF1-204ENST00000472217 GPBP1L1Q9HC44 474 aaPredicted RBP11.92□□□□□ -0.5
USF1-204ENST00000472217 RIPK4P57078 832 aa11.9□□□□□ -0.5
USF1-204ENST00000472217 EIF4A1P60842 406 aaKnown RBP11.9□□□□□ -0.5
USF1-204ENST00000472217 PRR5LQ6MZQ0 368 aa11.9□□□□□ -0.5
USF1-204ENST00000472217 C2CD5Q86YS7 1000 aa11.9□□□□□ -0.5
USF1-204ENST00000472217 CCDC24Q8N4L8 307 aa11.9□□□□□ -0.5
USF1-204ENST00000472217 SETDB2Q96T68 719 aa11.9□□□□□ -0.5
USF1-204ENST00000472217 TMPOP42166 694 aaKnown RBP11.89□□□□□ -0.51
USF1-204ENST00000472217 CCDC146Q8IYE0 955 aa11.89□□□□□ -0.51
USF1-204ENST00000472217 CNBD1Q8NA66 436 aa11.89□□□□□ -0.51
USF1-204ENST00000472217 PRKRIP1Q9H875 184 aaPredicted RBP11.89□□□□□ -0.51
USF1-204ENST00000472217 H0YIN7 160 aa11.88□□□□□ -0.51
USF1-204ENST00000472217 C9orf131Q5VYM1 1079 aa11.88□□□□□ -0.51
USF1-204ENST00000472217 CLEC4GQ6UXB4 293 aa11.88□□□□□ -0.51
USF1-204ENST00000472217 TTLL6Q8N841 843 aa11.88□□□□□ -0.51
USF1-204ENST00000472217 BRIP1Q9BX63 1249 aa11.88□□□□□ -0.51
USF1-204ENST00000472217 TSPYL4Q9UJ04 414 aa11.88□□□□□ -0.51
USF1-204ENST00000472217 ZNF652Q9Y2D9 606 aa11.88□□□□□ -0.51
USF1-204ENST00000472217 RRP7AQ9Y3A4 280 aaKnown RBP11.88□□□□□ -0.51
USF1-204ENST00000472217 SENP3-EIF4A1A0A087X0R7 540 aa11.87□□□□□ -0.51
USF1-204ENST00000472217 NPHP1O15259 732 aa11.87□□□□□ -0.51
USF1-204ENST00000472217 PDE6BP35913 854 aa11.87□□□□□ -0.51
USF1-204ENST00000472217 LMOD3Q0VAK6 560 aa11.87□□□□□ -0.51
USF1-204ENST00000472217 WDR43Q15061 677 aaKnown RBP eCLIP11.87□□□□□ -0.51
USF1-204ENST00000472217 SBF1O95248 1867 aa11.87□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 392.6 ms