RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 PPP2R1AP30153 589 aa17.81■□□□□ 0.44
CPSF4-210ENST00000469897 DALRD3Q5D0E6 543 aaKnown RBP17.81■□□□□ 0.44
CPSF4-210ENST00000469897 NUDCQ9Y266 331 aa17.81■□□□□ 0.44
CPSF4-210ENST00000469897 U2AF1L5P0DN76 240 aaPredicted RBP17.8■□□□□ 0.44
CPSF4-210ENST00000469897 U2AF1Q01081 240 aaKnown RBP eCLIP17.8■□□□□ 0.44
CPSF4-210ENST00000469897 RSPH6AQ9H0K4 717 aa17.8■□□□□ 0.44
CPSF4-210ENST00000469897 COL3A1P02461 1466 aaPredicted RBP17.8■□□□□ 0.44
CPSF4-210ENST00000469897 KCNQ3O43525 872 aa17.79■□□□□ 0.44
CPSF4-210ENST00000469897 SERPINB2P05120 415 aa17.79■□□□□ 0.44
CPSF4-210ENST00000469897 EIF5P55010 431 aaKnown RBP17.79■□□□□ 0.44
CPSF4-210ENST00000469897 MRC1P22897 1456 aa17.78■□□□□ 0.44
CPSF4-210ENST00000469897 BTBD11A6QL63 1104 aa17.78■□□□□ 0.44
CPSF4-210ENST00000469897 BICDL1Q6ZP65 573 aa17.78■□□□□ 0.44
CPSF4-210ENST00000469897 TEX13AQ9BXU3 409 aaPredicted RBP17.78■□□□□ 0.44
CPSF4-210ENST00000469897 ZNF330Q9Y3S2 320 aaPredicted RBP17.78■□□□□ 0.44
CPSF4-210ENST00000469897 COL5A3P25940 1745 aaPredicted RBP17.78■□□□□ 0.44
CPSF4-210ENST00000469897 COL15A1P39059 1388 aa17.78■□□□□ 0.44
CPSF4-210ENST00000469897 KCPQ6ZWJ8 1503 aa17.77■□□□□ 0.44
CPSF4-210ENST00000469897 KIF3CO14782 793 aa17.77■□□□□ 0.44
CPSF4-210ENST00000469897 A1BGP04217 495 aa17.77■□□□□ 0.44
CPSF4-210ENST00000469897 C9orf131Q5VYM1 1079 aa17.77■□□□□ 0.44
CPSF4-210ENST00000469897 MYH14Q7Z406 1995 aaKnown RBP17.77■□□□□ 0.43
CPSF4-210ENST00000469897 C4AP0C0L4 1744 aa17.76■□□□□ 0.43
CPSF4-210ENST00000469897 A0A087WZG4 1122 aa17.76■□□□□ 0.43
CPSF4-210ENST00000469897 FMNL2Q96PY5 1086 aa17.76■□□□□ 0.43
CPSF4-210ENST00000469897 TBC1D2BQ9UPU7 963 aa17.76■□□□□ 0.43
CPSF4-210ENST00000469897 HEG1Q9ULI3 1381 aa17.76■□□□□ 0.43
CPSF4-210ENST00000469897 MCM10Q7L590 875 aa17.75■□□□□ 0.43
CPSF4-210ENST00000469897 RTF1Q92541 710 aaKnown RBP17.75■□□□□ 0.43
CPSF4-210ENST00000469897 TJP1Q07157 1748 aa17.75■□□□□ 0.43
CPSF4-210ENST00000469897 SCN11AQ9UI33 1791 aa17.74■□□□□ 0.43
CPSF4-210ENST00000469897 DCTN1Q14203 1278 aa17.74■□□□□ 0.43
CPSF4-210ENST00000469897 TBC1D9BQ66K14 1250 aa17.74■□□□□ 0.43
CPSF4-210ENST00000469897 USP16Q9Y5T5 823 aa17.74■□□□□ 0.43
CPSF4-210ENST00000469897 IL6STP40189 918 aaPredicted RBP17.73■□□□□ 0.43
CPSF4-210ENST00000469897 CEMIPQ8WUJ3 1361 aa17.73■□□□□ 0.43
CPSF4-210ENST00000469897 PRAMEF22A3QJZ6 481 aa17.72■□□□□ 0.43
CPSF4-210ENST00000469897 HSPA6P17066 643 aa17.72■□□□□ 0.43
CPSF4-210ENST00000469897 C2CD5Q86YS7 1000 aa17.72■□□□□ 0.43
CPSF4-210ENST00000469897 CCDC24Q8N4L8 307 aa17.72■□□□□ 0.43
CPSF4-210ENST00000469897 NMRK2Q9NPI5 230 aa17.72■□□□□ 0.43
CPSF4-210ENST00000469897 H0YIN7 160 aa17.71■□□□□ 0.43
CPSF4-210ENST00000469897 PIP4K2AP48426 406 aaPredicted RBP17.71■□□□□ 0.43
CPSF4-210ENST00000469897 NPM2Q86SE8 214 aaKnown RBP17.71■□□□□ 0.43
CPSF4-210ENST00000469897 RNF181Q9P0P0 153 aa17.71■□□□□ 0.43
CPSF4-210ENST00000469897 N4BP2Q86UW6 1770 aaPredicted RBP17.71■□□□□ 0.43
CPSF4-210ENST00000469897 KIAA1551Q9HCM1 1747 aa17.69■□□□□ 0.42
CPSF4-210ENST00000469897 ADAMTS7Q9UKP4 1686 aa17.69■□□□□ 0.42
CPSF4-210ENST00000469897 TOMM70O94826 608 aa17.69■□□□□ 0.42
CPSF4-210ENST00000469897 TTLL6Q8N841 843 aa17.69■□□□□ 0.42
CPSF4-210ENST00000469897 MIS18AQ9NYP9 233 aa17.69■□□□□ 0.42
CPSF4-210ENST00000469897 KIF13BQ9NQT8 1826 aa17.68■□□□□ 0.42
CPSF4-210ENST00000469897 HTATSF1O43719 755 aaKnown RBP17.68■□□□□ 0.42
CPSF4-210ENST00000469897 CAMTA2O94983 1202 aa17.68■□□□□ 0.42
CPSF4-210ENST00000469897 SNRPA1P09661 255 aaKnown RBP17.68■□□□□ 0.42
CPSF4-210ENST00000469897 RASSF7Q02833 373 aa17.68■□□□□ 0.42
CPSF4-210ENST00000469897 DZIP3Q86Y13 1208 aaKnown RBP17.68■□□□□ 0.42
CPSF4-210ENST00000469897 SETDB2Q96T68 719 aa17.68■□□□□ 0.42
CPSF4-210ENST00000469897 TAF7Q15545 349 aaPredicted RBP17.67■□□□□ 0.42
CPSF4-210ENST00000469897 PRR5LQ6MZQ0 368 aa17.67■□□□□ 0.42
CPSF4-210ENST00000469897 ZNF622Q969S3 477 aaKnown RBP eCLIP17.67■□□□□ 0.42
CPSF4-210ENST00000469897 BRIP1Q9BX63 1249 aa17.67■□□□□ 0.42
CPSF4-210ENST00000469897 RRAGCQ9HB90 399 aa17.67■□□□□ 0.42
CPSF4-210ENST00000469897 CARMIL3Q8ND23 1372 aa17.66■□□□□ 0.42
CPSF4-210ENST00000469897 PDE6BP35913 854 aa17.66■□□□□ 0.42
CPSF4-210ENST00000469897 ZNF219Q9P2Y4 722 aaPredicted RBP17.66■□□□□ 0.42
CPSF4-210ENST00000469897 NPHP1O15259 732 aa17.64■□□□□ 0.41
CPSF4-210ENST00000469897 NEFMP07197 916 aa17.64■□□□□ 0.41
CPSF4-210ENST00000469897 PRELPP51888 382 aa17.64■□□□□ 0.41
CPSF4-210ENST00000469897 C16orf71Q8IYS4 520 aaPredicted RBP17.64■□□□□ 0.41
CPSF4-210ENST00000469897 KDM2BQ8NHM5 1336 aa17.64■□□□□ 0.41
CPSF4-210ENST00000469897 NBPF26B4DH59 902 aa17.63■□□□□ 0.41
CPSF4-210ENST00000469897 NBPF10Q6P3W6 841 aaKnown RBP17.63■□□□□ 0.41
CPSF4-210ENST00000469897 NBPF15Q8N660 670 aa17.63■□□□□ 0.41
CPSF4-210ENST00000469897 PLEKHF1Q96S99 279 aa17.63■□□□□ 0.41
CPSF4-210ENST00000469897 C21orf2O43822 256 aa17.62■□□□□ 0.41
CPSF4-210ENST00000469897 LMNB1P20700 586 aa17.62■□□□□ 0.41
CPSF4-210ENST00000469897 CNBD1Q8NA66 436 aa17.62■□□□□ 0.41
CPSF4-210ENST00000469897 NFKBIEO00221 500 aa17.61■□□□□ 0.41
CPSF4-210ENST00000469897 CLEC4GQ6UXB4 293 aa17.61■□□□□ 0.41
CPSF4-210ENST00000469897 PDZRN3Q9UPQ7 1066 aa17.61■□□□□ 0.41
CPSF4-210ENST00000469897 APLP1P51693 650 aa17.6■□□□□ 0.41
CPSF4-210ENST00000469897 ST5P78524 1137 aa17.6■□□□□ 0.41
CPSF4-210ENST00000469897 NGEFQ8N5V2 710 aa17.6■□□□□ 0.41
CPSF4-210ENST00000469897 RBM46Q8TBY0 533 aaKnown RBP17.6■□□□□ 0.41
CPSF4-210ENST00000469897 THUMPD2Q9BTF0 503 aaKnown RBP17.6■□□□□ 0.41
CPSF4-210ENST00000469897 UBR2Q8IWV8 1755 aa17.59■□□□□ 0.41
CPSF4-210ENST00000469897 NFE2L2Q16236 605 aa17.59■□□□□ 0.41
CPSF4-210ENST00000469897 NBPF5PQ86XG9 351 aaPredicted RBP17.59■□□□□ 0.41
CPSF4-210ENST00000469897 PNISRQ8TF01 805 aaKnown RBP17.59■□□□□ 0.41
CPSF4-210ENST00000469897 ZNF652Q9Y2D9 606 aa17.59■□□□□ 0.41
CPSF4-210ENST00000469897 GLTPD2A6NH11 291 aa17.58■□□□□ 0.4
CPSF4-210ENST00000469897 FAM177BA6PVY3 158 aa17.58■□□□□ 0.4
CPSF4-210ENST00000469897 SRGNP10124 158 aa17.58■□□□□ 0.4
CPSF4-210ENST00000469897 HLFQ16534 295 aa17.58■□□□□ 0.4
CPSF4-210ENST00000469897 PNNQ9H307 717 aaKnown RBP17.58■□□□□ 0.4
CPSF4-210ENST00000469897 NIP7Q9Y221 180 aaKnown RBP eCLIP17.58■□□□□ 0.4
CPSF4-210ENST00000469897 STYK1Q6J9G0 422 aa17.57■□□□□ 0.4
CPSF4-210ENST00000469897 TPTE2Q6XPS3 522 aa17.57■□□□□ 0.4
CPSF4-210ENST00000469897 CNKSR1Q969H4 720 aa17.57■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 83.2 ms