RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 INTS5Q6P9B9 1019 aaKnown RBP15.56■□□□□ 0.08
VPS13D-204ENST00000469054 AMIGO3Q86WK7 504 aa15.56■□□□□ 0.08
VPS13D-204ENST00000469054 FLAD1Q8NFF5 587 aa15.56■□□□□ 0.08
VPS13D-204ENST00000469054 RTCBQ9Y3I0 505 aaKnown RBP15.56■□□□□ 0.08
VPS13D-204ENST00000469054 IL16Q14005 1332 aa15.56■□□□□ 0.08
VPS13D-204ENST00000469054 PNPLA7Q6ZV29 1317 aa15.56■□□□□ 0.08
VPS13D-204ENST00000469054 ZNF831Q5JPB2 1677 aa15.55■□□□□ 0.08
VPS13D-204ENST00000469054 COL23A1Q86Y22 540 aaPredicted RBP15.55■□□□□ 0.08
VPS13D-204ENST00000469054 PDGFDQ9GZP0 370 aaPredicted RBP15.55■□□□□ 0.08
VPS13D-204ENST00000469054 CCDC87Q9NVE4 849 aa15.55■□□□□ 0.08
VPS13D-204ENST00000469054 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.54■□□□□ 0.08
VPS13D-204ENST00000469054 PHF14O94880 888 aa15.54■□□□□ 0.08
VPS13D-204ENST00000469054 TRAPPC3LQ5T215 181 aa15.54■□□□□ 0.08
VPS13D-204ENST00000469054 SMIM5Q71RC9 77 aa15.54■□□□□ 0.08
VPS13D-204ENST00000469054 ZBTB1Q9Y2K1 713 aa15.54■□□□□ 0.08
VPS13D-204ENST00000469054 C4BP0C0L5 1744 aa15.54■□□□□ 0.08
VPS13D-204ENST00000469054 C5P01031 1676 aa15.54■□□□□ 0.08
VPS13D-204ENST00000469054 ZNF521Q96K83 1311 aa15.53■□□□□ 0.08
VPS13D-204ENST00000469054 A1BGP04217 495 aa15.53■□□□□ 0.08
VPS13D-204ENST00000469054 UBR2Q8IWV8 1755 aa15.53■□□□□ 0.08
VPS13D-204ENST00000469054 CANXP27824 592 aaKnown RBP15.52■□□□□ 0.08
VPS13D-204ENST00000469054 KRT24Q2M2I5 525 aa15.52■□□□□ 0.08
VPS13D-204ENST00000469054 SLC16A10Q8TF71 515 aa15.52■□□□□ 0.08
VPS13D-204ENST00000469054 CICQ96RK0 1608 aaPredicted RBP15.51■□□□□ 0.07
VPS13D-204ENST00000469054 SOS1Q07889 1333 aaPredicted RBP15.51■□□□□ 0.07
VPS13D-204ENST00000469054 ARHGEF1Q92888 912 aaKnown RBP15.51■□□□□ 0.07
VPS13D-204ENST00000469054 KDM3BQ7LBC6 1761 aa15.51■□□□□ 0.07
VPS13D-204ENST00000469054 TJP1Q07157 1748 aa15.51■□□□□ 0.07
VPS13D-204ENST00000469054 TAF1LQ8IZX4 1826 aa15.5■□□□□ 0.07
VPS13D-204ENST00000469054 ZBTB7AO95365 584 aa15.5■□□□□ 0.07
VPS13D-204ENST00000469054 HOXB7P09629 217 aa15.5■□□□□ 0.07
VPS13D-204ENST00000469054 EIF2S2P20042 333 aaKnown RBP15.5■□□□□ 0.07
VPS13D-204ENST00000469054 IL6STP40189 918 aaPredicted RBP15.5■□□□□ 0.07
VPS13D-204ENST00000469054 EIF5P55010 431 aaKnown RBP15.5■□□□□ 0.07
VPS13D-204ENST00000469054 DUSP27Q5VZP5 1158 aa15.5■□□□□ 0.07
VPS13D-204ENST00000469054 TSR2Q969E8 191 aaKnown RBP15.5■□□□□ 0.07
VPS13D-204ENST00000469054 MTFR1LQ9H019 292 aa15.5■□□□□ 0.07
VPS13D-204ENST00000469054 SPINK5Q9NQ38 1064 aaPredicted RBP15.5■□□□□ 0.07
VPS13D-204ENST00000469054 RFC4P35249 363 aa15.49■□□□□ 0.07
VPS13D-204ENST00000469054 GOLGA2Q08379 1002 aa15.49■□□□□ 0.07
VPS13D-204ENST00000469054 COL5A3P25940 1745 aaPredicted RBP15.48■□□□□ 0.07
VPS13D-204ENST00000469054 FANCIQ9NVI1 1328 aa15.48■□□□□ 0.07
VPS13D-204ENST00000469054 NBPF26B4DH59 902 aa15.48■□□□□ 0.07
VPS13D-204ENST00000469054 PIP4K2AP48426 406 aaPredicted RBP15.48■□□□□ 0.07
VPS13D-204ENST00000469054 NBPF10Q6P3W6 841 aaKnown RBP15.48■□□□□ 0.07
VPS13D-204ENST00000469054 NPM2Q86SE8 214 aaKnown RBP15.48■□□□□ 0.07
VPS13D-204ENST00000469054 NBPF15Q8N660 670 aa15.48■□□□□ 0.07
VPS13D-204ENST00000469054 C8orf58Q8NAV2 365 aa15.48■□□□□ 0.07
VPS13D-204ENST00000469054 MYH16Q9H6N6 1097 aa15.48■□□□□ 0.07
VPS13D-204ENST00000469054 ATF5Q9Y2D1 282 aaPredicted RBP15.48■□□□□ 0.07
VPS13D-204ENST00000469054 A0A087WZG4 1122 aa15.47■□□□□ 0.07
VPS13D-204ENST00000469054 ELL2O00472 640 aaPredicted RBP15.47■□□□□ 0.07
VPS13D-204ENST00000469054 HNRNPUQ00839 825 aaKnown RBP eCLIP15.47■□□□□ 0.07
VPS13D-204ENST00000469054 SPON1Q9HCB6 807 aa15.47■□□□□ 0.07
VPS13D-204ENST00000469054 ZNF330Q9Y3S2 320 aaPredicted RBP15.47■□□□□ 0.07
VPS13D-204ENST00000469054 COL15A1P39059 1388 aa15.47■□□□□ 0.07
VPS13D-204ENST00000469054 ERBB4Q15303 1308 aa15.46■□□□□ 0.07
VPS13D-204ENST00000469054 MYH14Q7Z406 1995 aaKnown RBP15.46■□□□□ 0.07
VPS13D-204ENST00000469054 E9PSI1 815 aa15.46■□□□□ 0.07
VPS13D-204ENST00000469054 HDGFL1Q5TGJ6 251 aa15.46■□□□□ 0.07
VPS13D-204ENST00000469054 TSPYL6Q8N831 410 aa15.46■□□□□ 0.07
VPS13D-204ENST00000469054 NECTIN2Q92692 538 aa15.46■□□□□ 0.07
VPS13D-204ENST00000469054 USP42Q9H9J4 1324 aaKnown RBP15.45■□□□□ 0.06
VPS13D-204ENST00000469054 ZPR1O75312 459 aa15.45■□□□□ 0.06
VPS13D-204ENST00000469054 SLFN5Q08AF3 891 aa15.45■□□□□ 0.06
VPS13D-204ENST00000469054 SRP68Q9UHB9 627 aaKnown RBP15.45■□□□□ 0.06
VPS13D-204ENST00000469054 NARFQ9UHQ1 456 aa15.45■□□□□ 0.06
VPS13D-204ENST00000469054 GYS1P13807 737 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 EXOSC9Q06265 439 aaKnown RBP15.44■□□□□ 0.06
VPS13D-204ENST00000469054 PDIA6Q15084 440 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 TWISTNBQ3B726 338 aaPredicted RBP15.44■□□□□ 0.06
VPS13D-204ENST00000469054 MSL1Q68DK7 614 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 NLGN1Q8N2Q7 840 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 CDCA7LQ96GN5 454 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 CHMP4AQ9BY43 222 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 CASZ1Q86V15 1759 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 UBR3Q6ZT12 1888 aa15.44■□□□□ 0.06
VPS13D-204ENST00000469054 QSER1Q2KHR3 1735 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 MYL6BP14649 208 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 PTGER2P43116 358 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 PROSER3Q2NL68 480 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 USPL1Q5W0Q7 1092 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 DZIP3Q86Y13 1208 aaKnown RBP15.43■□□□□ 0.06
VPS13D-204ENST00000469054 ARXQ96QS3 562 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 SGIP1Q9BQI5 828 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 TBC1D2BQ9UPU7 963 aa15.43■□□□□ 0.06
VPS13D-204ENST00000469054 ANXA1P04083 346 aa15.42■□□□□ 0.06
VPS13D-204ENST00000469054 POLD1P28340 1107 aa15.42■□□□□ 0.06
VPS13D-204ENST00000469054 CCDC30Q5VVM6 783 aa15.42■□□□□ 0.06
VPS13D-204ENST00000469054 LRP10Q7Z4F1 713 aa15.42■□□□□ 0.06
VPS13D-204ENST00000469054 DDX21Q9NR30 783 aaKnown RBP eCLIP15.42■□□□□ 0.06
VPS13D-204ENST00000469054 CHPF2Q9P2E5 772 aa15.42■□□□□ 0.06
VPS13D-204ENST00000469054 DBF4Q9UBU7 674 aaPredicted RBP15.42■□□□□ 0.06
VPS13D-204ENST00000469054 TUBGCP6Q96RT7 1819 aa15.41■□□□□ 0.06
VPS13D-204ENST00000469054 VAMP4O75379 141 aa15.41■□□□□ 0.06
VPS13D-204ENST00000469054 CAMTA2O94983 1202 aa15.41■□□□□ 0.06
VPS13D-204ENST00000469054 FKBP8Q14318 412 aa15.41■□□□□ 0.06
VPS13D-204ENST00000469054 TRMT2AQ8IZ69 625 aaKnown RBP15.41■□□□□ 0.06
VPS13D-204ENST00000469054 BCL2L12Q9HB09 334 aa15.41■□□□□ 0.06
VPS13D-204ENST00000469054 MMP10P09238 476 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms