RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 COL15A1P39059 1388 aa32.9■■■□□ 2.86
PTCH1-210ENST00000468211 ARFGEF1Q9Y6D6 1849 aa32.9■■■□□ 2.86
PTCH1-210ENST00000468211 POLRMTO00411 1230 aaKnown RBP32.89■■■□□ 2.86
PTCH1-210ENST00000468211 ZPR1O75312 459 aa32.89■■■□□ 2.86
PTCH1-210ENST00000468211 PPP2R1AP30153 589 aa32.89■■■□□ 2.86
PTCH1-210ENST00000468211 PRKAR2BP31323 418 aa32.89■■■□□ 2.86
PTCH1-210ENST00000468211 ZNF496Q96IT1 587 aaPredicted RBP32.88■■■□□ 2.85
PTCH1-210ENST00000468211 CFAP53Q96M91 514 aa32.88■■■□□ 2.85
PTCH1-210ENST00000468211 GPBP1L1Q9HC44 474 aaPredicted RBP32.88■■■□□ 2.85
PTCH1-210ENST00000468211 TEFQ10587 303 aa32.87■■■□□ 2.85
PTCH1-210ENST00000468211 TTC5Q8N0Z6 440 aa32.87■■■□□ 2.85
PTCH1-210ENST00000468211 BCL2L12Q9HB09 334 aa32.87■■■□□ 2.85
PTCH1-210ENST00000468211 NARFQ9UHQ1 456 aa32.87■■■□□ 2.85
PTCH1-210ENST00000468211 FCHSD2O94868 740 aa32.86■■■□□ 2.85
PTCH1-210ENST00000468211 CANXP27824 592 aaKnown RBP32.85■■■□□ 2.85
PTCH1-210ENST00000468211 ZNF790Q6PG37 636 aa32.85■■■□□ 2.85
PTCH1-210ENST00000468211 CEMIPQ8WUJ3 1361 aa32.84■■■□□ 2.85
PTCH1-210ENST00000468211 NRXN2Q9P2S2 1712 aa32.84■■■□□ 2.85
PTCH1-210ENST00000468211 CHRNA5P30532 468 aa32.83■■■□□ 2.85
PTCH1-210ENST00000468211 NFIXQ14938 502 aa32.83■■■□□ 2.85
PTCH1-210ENST00000468211 ARHGAP27Q6ZUM4 889 aa32.83■■■□□ 2.85
PTCH1-210ENST00000468211 HEG1Q9ULI3 1381 aa32.83■■■□□ 2.85
PTCH1-210ENST00000468211 PIM2Q9P1W9 311 aa32.81■■■□□ 2.84
PTCH1-210ENST00000468211 KCNQ3O43525 872 aa32.8■■■□□ 2.84
PTCH1-210ENST00000468211 STARD3NLO95772 234 aa32.8■■■□□ 2.84
PTCH1-210ENST00000468211 U2AF1L5P0DN76 240 aaPredicted RBP32.8■■■□□ 2.84
PTCH1-210ENST00000468211 EIF5P55010 431 aaKnown RBP32.8■■■□□ 2.84
PTCH1-210ENST00000468211 U2AF1Q01081 240 aaKnown RBP eCLIP32.8■■■□□ 2.84
PTCH1-210ENST00000468211 NUDCQ9Y266 331 aa32.8■■■□□ 2.84
PTCH1-210ENST00000468211 DALRD3Q5D0E6 543 aaKnown RBP32.76■■■□□ 2.83
PTCH1-210ENST00000468211 DLEC1Q9Y238 1755 aa32.75■■■□□ 2.83
PTCH1-210ENST00000468211 SCN7AQ01118 1682 aa32.75■■■□□ 2.83
PTCH1-210ENST00000468211 BTBD11A6QL63 1104 aa32.74■■■□□ 2.83
PTCH1-210ENST00000468211 SERPINB2P05120 415 aa32.74■■■□□ 2.83
PTCH1-210ENST00000468211 FMNL2Q96PY5 1086 aa32.74■■■□□ 2.83
PTCH1-210ENST00000468211 MCM10Q7L590 875 aa32.73■■■□□ 2.83
PTCH1-210ENST00000468211 TEX13AQ9BXU3 409 aaPredicted RBP32.73■■■□□ 2.83
PTCH1-210ENST00000468211 SBF1O95248 1867 aa32.73■■■□□ 2.83
PTCH1-210ENST00000468211 KIF3CO14782 793 aa32.72■■■□□ 2.83
PTCH1-210ENST00000468211 A1BGP04217 495 aa32.72■■■□□ 2.83
PTCH1-210ENST00000468211 BICDL1Q6ZP65 573 aa32.72■■■□□ 2.83
PTCH1-210ENST00000468211 CARMIL3Q8ND23 1372 aa32.71■■■□□ 2.83
PTCH1-210ENST00000468211 CEP350Q5VT06 3117 aa32.71■■■□□ 2.83
PTCH1-210ENST00000468211 ZNF330Q9Y3S2 320 aaPredicted RBP32.71■■■□□ 2.83
PTCH1-210ENST00000468211 ANKRD31Q8N7Z5 1873 aa32.7■■■□□ 2.83
PTCH1-210ENST00000468211 A0A087WZG4 1122 aa32.7■■■□□ 2.83
PTCH1-210ENST00000468211 DCTN1Q14203 1278 aa32.7■■■□□ 2.83
PTCH1-210ENST00000468211 TBC1D2BQ9UPU7 963 aa32.7■■■□□ 2.83
PTCH1-210ENST00000468211 DLG5Q8TDM6 1919 aa32.7■■■□□ 2.83
PTCH1-210ENST00000468211 TBC1D9BQ66K14 1250 aa32.69■■■□□ 2.82
PTCH1-210ENST00000468211 PRAMEF22A3QJZ6 481 aa32.68■■■□□ 2.82
PTCH1-210ENST00000468211 IL6STP40189 918 aaPredicted RBP32.68■■■□□ 2.82
PTCH1-210ENST00000468211 C9orf131Q5VYM1 1079 aa32.68■■■□□ 2.82
PTCH1-210ENST00000468211 USP16Q9Y5T5 823 aa32.67■■■□□ 2.82
PTCH1-210ENST00000468211 RTF1Q92541 710 aaKnown RBP32.66■■■□□ 2.82
PTCH1-210ENST00000468211 BCORQ6W2J9 1755 aa32.65■■■□□ 2.82
PTCH1-210ENST00000468211 PIP4K2AP48426 406 aaPredicted RBP32.65■■■□□ 2.82
PTCH1-210ENST00000468211 CAMTA2O94983 1202 aa32.62■■■□□ 2.81
PTCH1-210ENST00000468211 NMRK2Q9NPI5 230 aa32.62■■■□□ 2.81
PTCH1-210ENST00000468211 COL11A2P13942 1736 aaPredicted RBP32.61■■■□□ 2.81
PTCH1-210ENST00000468211 C2CD5Q86YS7 1000 aa32.61■■■□□ 2.81
PTCH1-210ENST00000468211 CCDC24Q8N4L8 307 aa32.61■■■□□ 2.81
PTCH1-210ENST00000468211 HTATSF1O43719 755 aaKnown RBP32.6■■■□□ 2.81
PTCH1-210ENST00000468211 RNF181Q9P0P0 153 aa32.6■■■□□ 2.81
PTCH1-210ENST00000468211 CCDC88AQ3V6T2 1871 aa32.6■■■□□ 2.81
PTCH1-210ENST00000468211 HSPA6P17066 643 aa32.58■■■□□ 2.81
PTCH1-210ENST00000468211 RASSF7Q02833 373 aa32.58■■■□□ 2.81
PTCH1-210ENST00000468211 PRR5LQ6MZQ0 368 aa32.58■■■□□ 2.81
PTCH1-210ENST00000468211 SNRPA1P09661 255 aaKnown RBP32.57■■■□□ 2.8
PTCH1-210ENST00000468211 DZIP3Q86Y13 1208 aaKnown RBP32.57■■■□□ 2.8
PTCH1-210ENST00000468211 TTLL6Q8N841 843 aa32.57■■■□□ 2.8
PTCH1-210ENST00000468211 MIS18AQ9NYP9 233 aa32.57■■■□□ 2.8
PTCH1-210ENST00000468211 H0YIN7 160 aa32.56■■■□□ 2.8
PTCH1-210ENST00000468211 PRELPP51888 382 aa32.56■■■□□ 2.8
PTCH1-210ENST00000468211 PLEKHF1Q96S99 279 aa32.56■■■□□ 2.8
PTCH1-210ENST00000468211 TAF7Q15545 349 aaPredicted RBP32.55■■■□□ 2.8
PTCH1-210ENST00000468211 KDM3BQ7LBC6 1761 aa32.55■■■□□ 2.8
PTCH1-210ENST00000468211 NBPF26B4DH59 902 aa32.54■■■□□ 2.8
PTCH1-210ENST00000468211 NBPF10Q6P3W6 841 aaKnown RBP32.54■■■□□ 2.8
PTCH1-210ENST00000468211 NBPF15Q8N660 670 aa32.54■■■□□ 2.8
PTCH1-210ENST00000468211 CACNA1SQ13698 1873 aa32.53■■■□□ 2.8
PTCH1-210ENST00000468211 NPM2Q86SE8 214 aaKnown RBP32.53■■■□□ 2.8
PTCH1-210ENST00000468211 BRIP1Q9BX63 1249 aa32.53■■■□□ 2.8
PTCH1-210ENST00000468211 LAMB4A4D0S4 1761 aa32.53■■■□□ 2.8
PTCH1-210ENST00000468211 SETDB2Q96T68 719 aa32.52■■■□□ 2.8
PTCH1-210ENST00000468211 TOMM70O94826 608 aa32.5■■■□□ 2.79
PTCH1-210ENST00000468211 PDE6BP35913 854 aa32.49■■■□□ 2.79
PTCH1-210ENST00000468211 ZNF622Q969S3 477 aaKnown RBP eCLIP32.49■■■□□ 2.79
PTCH1-210ENST00000468211 THUMPD2Q9BTF0 503 aaKnown RBP32.49■■■□□ 2.79
PTCH1-210ENST00000468211 CNBD1Q8NA66 436 aa32.48■■■□□ 2.79
PTCH1-210ENST00000468211 TIAM2Q8IVF5 1701 aa32.48■■■□□ 2.79
PTCH1-210ENST00000468211 SLX4Q8IY92 1834 aa32.47■■■□□ 2.79
PTCH1-210ENST00000468211 NFKBIEO00221 500 aa32.47■■■□□ 2.79
PTCH1-210ENST00000468211 NEFMP07197 916 aa32.47■■■□□ 2.79
PTCH1-210ENST00000468211 NFE2L2Q16236 605 aa32.47■■■□□ 2.79
PTCH1-210ENST00000468211 FER1L6Q2WGJ9 1857 aa32.47■■■□□ 2.79
PTCH1-210ENST00000468211 TNRC6CQ9HCJ0 1690 aaKnown RBP32.46■■■□□ 2.79
PTCH1-210ENST00000468211 LMNB1P20700 586 aa32.45■■■□□ 2.79
PTCH1-210ENST00000468211 ZNF219Q9P2Y4 722 aaPredicted RBP32.45■■■□□ 2.79
PTCH1-210ENST00000468211 KDM2BQ8NHM5 1336 aa32.45■■■□□ 2.78
Retrieved 100 of 20,778 RNA–protein pairs in 44.6 ms