RNA–Protein interactions for RNA: ENST00000463526.1

CMSS1-202, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 3

Gene CMSS1, Length 397 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-202ENST00000463526 RNF181Q9P0P0 153 aa20.69■□□□□ 0.9
CMSS1-202ENST00000463526 NARFQ9UHQ1 456 aa20.69■□□□□ 0.9
CMSS1-202ENST00000463526 COL15A1P39059 1388 aa20.68■□□□□ 0.9
CMSS1-202ENST00000463526 BICDL1Q6ZP65 573 aa20.67■□□□□ 0.9
CMSS1-202ENST00000463526 TTC5Q8N0Z6 440 aa20.67■□□□□ 0.9
CMSS1-202ENST00000463526 SERPINB2P05120 415 aa20.66■□□□□ 0.9
CMSS1-202ENST00000463526 IFFO2Q5TF58 517 aa20.66■□□□□ 0.9
CMSS1-202ENST00000463526 C16orf71Q8IYS4 520 aaPredicted RBP20.66■□□□□ 0.9
CMSS1-202ENST00000463526 BCL2L12Q9HB09 334 aa20.66■□□□□ 0.9
CMSS1-202ENST00000463526 KCPQ6ZWJ8 1503 aa20.65■□□□□ 0.9
CMSS1-202ENST00000463526 MRC1P22897 1456 aa20.65■□□□□ 0.9
CMSS1-202ENST00000463526 APLP1P51693 650 aa20.65■□□□□ 0.9
CMSS1-202ENST00000463526 VSIG10Q8N0Z9 540 aa20.65■□□□□ 0.9
CMSS1-202ENST00000463526 ZNF330Q9Y3S2 320 aaPredicted RBP20.64■□□□□ 0.89
CMSS1-202ENST00000463526 BRCA1P38398 1863 aaKnown RBP20.64■□□□□ 0.89
CMSS1-202ENST00000463526 STARD3NLO95772 234 aa20.63■□□□□ 0.89
CMSS1-202ENST00000463526 RASSF7Q02833 373 aa20.63■□□□□ 0.89
CMSS1-202ENST00000463526 TEFQ10587 303 aa20.63■□□□□ 0.89
CMSS1-202ENST00000463526 IL17REQ8NFR9 667 aa20.63■□□□□ 0.89
CMSS1-202ENST00000463526 RRAGCQ9HB90 399 aa20.63■□□□□ 0.89
CMSS1-202ENST00000463526 ADAMTS7Q9UKP4 1686 aa20.63■□□□□ 0.89
CMSS1-202ENST00000463526 GNAT3A8MTJ3 354 aa20.62■□□□□ 0.89
CMSS1-202ENST00000463526 C2CD5Q86YS7 1000 aa20.62■□□□□ 0.89
CMSS1-202ENST00000463526 ZNF496Q96IT1 587 aaPredicted RBP20.62■□□□□ 0.89
CMSS1-202ENST00000463526 KDM2BQ8NHM5 1336 aa20.61■□□□□ 0.89
CMSS1-202ENST00000463526 GAS2L2Q8NHY3 880 aa20.61■□□□□ 0.89
CMSS1-202ENST00000463526 RBM46Q8TBY0 533 aaKnown RBP20.61■□□□□ 0.89
CMSS1-202ENST00000463526 ARFGEF1Q9Y6D6 1849 aa20.6■□□□□ 0.89
CMSS1-202ENST00000463526 EIF5P55010 431 aaKnown RBP20.6■□□□□ 0.89
CMSS1-202ENST00000463526 ZNF790Q6PG37 636 aa20.6■□□□□ 0.89
CMSS1-202ENST00000463526 TBC1D2BQ9UPU7 963 aa20.6■□□□□ 0.89
CMSS1-202ENST00000463526 A0A087WZG4 1122 aa20.59■□□□□ 0.89
CMSS1-202ENST00000463526 HTRA3P83110 453 aa20.59■□□□□ 0.89
CMSS1-202ENST00000463526 CCDC24Q8N4L8 307 aa20.59■□□□□ 0.89
CMSS1-202ENST00000463526 TTLL6Q8N841 843 aa20.59■□□□□ 0.89
CMSS1-202ENST00000463526 H0YIN7 160 aa20.58■□□□□ 0.89
CMSS1-202ENST00000463526 TBC1D9BQ66K14 1250 aa20.58■□□□□ 0.89
CMSS1-202ENST00000463526 CARMIL3Q8ND23 1372 aa20.58■□□□□ 0.88
CMSS1-202ENST00000463526 HEG1Q9ULI3 1381 aa20.58■□□□□ 0.88
CMSS1-202ENST00000463526 COL3A1P02461 1466 aaPredicted RBP20.57■□□□□ 0.88
CMSS1-202ENST00000463526 DNAJC5GQ8N7S2 189 aa20.57■□□□□ 0.88
CMSS1-202ENST00000463526 PHACTR3Q96KR7 559 aa20.57■□□□□ 0.88
CMSS1-202ENST00000463526 ZNF219Q9P2Y4 722 aaPredicted RBP20.57■□□□□ 0.88
CMSS1-202ENST00000463526 KCNQ3O43525 872 aa20.56■□□□□ 0.88
CMSS1-202ENST00000463526 A1BGP04217 495 aa20.56■□□□□ 0.88
CMSS1-202ENST00000463526 PRKAR2BP31323 418 aa20.56■□□□□ 0.88
CMSS1-202ENST00000463526 PRELPP51888 382 aa20.56■□□□□ 0.88
CMSS1-202ENST00000463526 ZNF622Q969S3 477 aaKnown RBP eCLIP20.56■□□□□ 0.884e-7■■■□□ 15.6
CMSS1-202ENST00000463526 TEX13AQ9BXU3 409 aaPredicted RBP20.56■□□□□ 0.88
CMSS1-202ENST00000463526 NPC1L1Q9UHC9 1359 aa20.56■□□□□ 0.88
CMSS1-202ENST00000463526 VIRMAQ69YN4 1812 aaKnown RBP20.55■□□□□ 0.88
CMSS1-202ENST00000463526 LMNB1P20700 586 aa20.55■□□□□ 0.88
CMSS1-202ENST00000463526 NPM2Q86SE8 214 aaKnown RBP20.55■□□□□ 0.88
CMSS1-202ENST00000463526 CFAP53Q96M91 514 aa20.55■□□□□ 0.88
CMSS1-202ENST00000463526 FMNL2Q96PY5 1086 aa20.55■□□□□ 0.88
CMSS1-202ENST00000463526 AFDNP55196 1824 aaKnown RBP20.55■□□□□ 0.88
CMSS1-202ENST00000463526 BTBD11A6QL63 1104 aa20.54■□□□□ 0.88
CMSS1-202ENST00000463526 NPHP1O15259 732 aa20.53■□□□□ 0.88
CMSS1-202ENST00000463526 PIP4K2AP48426 406 aaPredicted RBP20.53■□□□□ 0.88
CMSS1-202ENST00000463526 FSTL1Q12841 308 aa20.53■□□□□ 0.88
CMSS1-202ENST00000463526 IL6STP40189 918 aaPredicted RBP20.52■□□□□ 0.88
CMSS1-202ENST00000463526 PRR5LQ6MZQ0 368 aa20.52■□□□□ 0.88
CMSS1-202ENST00000463526 RSPH6AQ9H0K4 717 aa20.52■□□□□ 0.88
CMSS1-202ENST00000463526 NFKBIEO00221 500 aa20.51■□□□□ 0.87
CMSS1-202ENST00000463526 C21orf2O43822 256 aa20.51■□□□□ 0.87
CMSS1-202ENST00000463526 PDE6BP35913 854 aa20.51■□□□□ 0.87
CMSS1-202ENST00000463526 BRIP1Q9BX63 1249 aa20.51■□□□□ 0.87
CMSS1-202ENST00000463526 NUDCQ9Y266 331 aa20.51■□□□□ 0.87
CMSS1-202ENST00000463526 UBR2Q8IWV8 1755 aa20.51■□□□□ 0.87
CMSS1-202ENST00000463526 NRXN2Q9P2S2 1712 aa20.5■□□□□ 0.87
CMSS1-202ENST00000463526 SBF1O95248 1867 aa20.5■□□□□ 0.87
CMSS1-202ENST00000463526 GLTPD2A6NH11 291 aa20.5■□□□□ 0.87
CMSS1-202ENST00000463526 U2AF1L5P0DN76 240 aaPredicted RBP20.5■□□□□ 0.87
CMSS1-202ENST00000463526 U2AF1Q01081 240 aaKnown RBP eCLIP20.5■□□□□ 0.87
CMSS1-202ENST00000463526 SETDB2Q96T68 719 aa20.5■□□□□ 0.87
CMSS1-202ENST00000463526 USP16Q9Y5T5 823 aa20.5■□□□□ 0.87
CMSS1-202ENST00000463526 PRAMEF22A3QJZ6 481 aa20.49■□□□□ 0.87
CMSS1-202ENST00000463526 CAMTA2O94983 1202 aa20.49■□□□□ 0.87
CMSS1-202ENST00000463526 MCM10Q7L590 875 aa20.49■□□□□ 0.87
CMSS1-202ENST00000463526 DZIP3Q86Y13 1208 aaKnown RBP20.49■□□□□ 0.87
CMSS1-202ENST00000463526 SMC1BQ8NDV3 1235 aa20.49■□□□□ 0.87
CMSS1-202ENST00000463526 CEMIPQ8WUJ3 1361 aa20.48■□□□□ 0.87
CMSS1-202ENST00000463526 VEGFAP15692 232 aaPredicted RBP20.48■□□□□ 0.87
CMSS1-202ENST00000463526 CNBD1Q8NA66 436 aa20.48■□□□□ 0.87
CMSS1-202ENST00000463526 RTF1Q92541 710 aaKnown RBP20.48■□□□□ 0.87
CMSS1-202ENST00000463526 KLRG1Q96E93 195 aa20.48■□□□□ 0.87
CMSS1-202ENST00000463526 ZC3H4Q9UPT8 1303 aaKnown RBP20.48■□□□□ 0.87
CMSS1-202ENST00000463526 PPP2R1AP30153 589 aa20.46■□□□□ 0.87
CMSS1-202ENST00000463526 ST5P78524 1137 aa20.46■□□□□ 0.87
CMSS1-202ENST00000463526 DCTN1Q14203 1278 aa20.46■□□□□ 0.87
CMSS1-202ENST00000463526 PDZRN3Q9UPQ7 1066 aa20.46■□□□□ 0.87
CMSS1-202ENST00000463526 ERFEQ4G0M1 354 aa20.45■□□□□ 0.86
CMSS1-202ENST00000463526 SNRPA1P09661 255 aaKnown RBP20.44■□□□□ 0.86
CMSS1-202ENST00000463526 DPY19L2Q6NUT2 758 aa20.44■□□□□ 0.86
CMSS1-202ENST00000463526 WDR90Q96KV7 1748 aa20.44■□□□□ 0.86
CMSS1-202ENST00000463526 CNKSR1Q969H4 720 aa20.43■□□□□ 0.86
CMSS1-202ENST00000463526 TNRC6CQ9HCJ0 1690 aaKnown RBP20.42■□□□□ 0.86
CMSS1-202ENST00000463526 SIPA1L3O60292 1781 aaPredicted RBP20.42■□□□□ 0.86
CMSS1-202ENST00000463526 DLEC1Q9Y238 1755 aa20.42■□□□□ 0.86
CMSS1-202ENST00000463526 FAM177BA6PVY3 158 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms