RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 ZNF316A6NFI3 1004 aaPredicted RBP30.37■■■□□ 2.45
PTPN4-208ENST00000460289 CANXP27824 592 aaKnown RBP30.37■■■□□ 2.45
PTPN4-208ENST00000460289 SRP68Q9UHB9 627 aaKnown RBP30.37■■■□□ 2.45
PTPN4-208ENST00000460289 WDR43Q15061 677 aaKnown RBP eCLIP30.36■■■□□ 2.45
PTPN4-208ENST00000460289 PNISRQ8TF01 805 aaKnown RBP30.36■■■□□ 2.45
PTPN4-208ENST00000460289 PARP3Q9Y6F1 533 aa30.36■■■□□ 2.45
PTPN4-208ENST00000460289 PELP1Q8IZL8 1130 aaKnown RBP30.35■■■□□ 2.45
PTPN4-208ENST00000460289 COL15A1P39059 1388 aa30.34■■■□□ 2.45
PTPN4-208ENST00000460289 YY1P25490 414 aa30.34■■■□□ 2.45
PTPN4-208ENST00000460289 NARFQ9UHQ1 456 aa30.34■■■□□ 2.45
PTPN4-208ENST00000460289 A0A087WZG4 1122 aa30.33■■■□□ 2.45
PTPN4-208ENST00000460289 SNRPA1P09661 255 aaKnown RBP30.33■■■□□ 2.45
PTPN4-208ENST00000460289 FKBP8Q14318 412 aa30.33■■■□□ 2.45
PTPN4-208ENST00000460289 USPL1Q5W0Q7 1092 aa30.33■■■□□ 2.45
PTPN4-208ENST00000460289 C4AP0C0L4 1744 aa30.33■■■□□ 2.45
PTPN4-208ENST00000460289 EIF5P55010 431 aaKnown RBP30.32■■■□□ 2.44
PTPN4-208ENST00000460289 RIPK4P57078 832 aa30.32■■■□□ 2.44
PTPN4-208ENST00000460289 IL6STP40189 918 aaPredicted RBP30.3■■■□□ 2.44
PTPN4-208ENST00000460289 NPM2Q86SE8 214 aaKnown RBP30.3■■■□□ 2.44
PTPN4-208ENST00000460289 GRIN3BO60391 1043 aa30.29■■■□□ 2.44
PTPN4-208ENST00000460289 MIS18AQ9NYP9 233 aa30.29■■■□□ 2.44
PTPN4-208ENST00000460289 USP16Q9Y5T5 823 aa30.29■■■□□ 2.44
PTPN4-208ENST00000460289 DLG5Q8TDM6 1919 aa30.29■■■□□ 2.44
PTPN4-208ENST00000460289 TMPOP42166 694 aaKnown RBP30.28■■■□□ 2.44
PTPN4-208ENST00000460289 LMOD3Q0VAK6 560 aa30.28■■■□□ 2.44
PTPN4-208ENST00000460289 RUNDC1Q96C34 613 aa30.28■■■□□ 2.44
PTPN4-208ENST00000460289 ADAMTS8Q9UP79 889 aa30.28■■■□□ 2.44
PTPN4-208ENST00000460289 A1BGP04217 495 aa30.27■■■□□ 2.44
PTPN4-208ENST00000460289 TM4SF1P30408 202 aa30.27■■■□□ 2.44
PTPN4-208ENST00000460289 THUMPD2Q9BTF0 503 aaKnown RBP30.27■■■□□ 2.44
PTPN4-208ENST00000460289 TGFB2P61812 414 aa30.26■■■□□ 2.43
PTPN4-208ENST00000460289 CCDC146Q8IYE0 955 aa30.26■■■□□ 2.43
PTPN4-208ENST00000460289 ZNF330Q9Y3S2 320 aaPredicted RBP30.25■■■□□ 2.43
PTPN4-208ENST00000460289 YBX3P16989 372 aaKnown RBP eCLIP30.24■■■□□ 2.43
PTPN4-208ENST00000460289 PRAMEF22A3QJZ6 481 aa30.23■■■□□ 2.43
PTPN4-208ENST00000460289 DDR1Q08345 913 aa30.23■■■□□ 2.43
PTPN4-208ENST00000460289 POLRMTO00411 1230 aaKnown RBP30.22■■■□□ 2.43
PTPN4-208ENST00000460289 BCL2L12Q9HB09 334 aa30.22■■■□□ 2.43
PTPN4-208ENST00000460289 UTRNP46939 3433 aa30.22■■■□□ 2.43
PTPN4-208ENST00000460289 C10orf71Q711Q0 1435 aa30.22■■■□□ 2.43
PTPN4-208ENST00000460289 NFIXQ14938 502 aa30.21■■■□□ 2.43
PTPN4-208ENST00000460289 TBC1D2BQ9UPU7 963 aa30.21■■■□□ 2.43
PTPN4-208ENST00000460289 EIF4A1P60842 406 aaKnown RBP30.2■■■□□ 2.43
PTPN4-208ENST00000460289 NEUROD2Q15784 382 aa30.2■■■□□ 2.43
PTPN4-208ENST00000460289 BABAM1Q9NWV8 329 aa30.2■■■□□ 2.43
PTPN4-208ENST00000460289 RRP7AQ9Y3A4 280 aaKnown RBP30.2■■■□□ 2.43
PTPN4-208ENST00000460289 TSPYL4Q9UJ04 414 aa30.18■■■□□ 2.42
PTPN4-208ENST00000460289 KIF13BQ9NQT8 1826 aa30.17■■■□□ 2.42
PTPN4-208ENST00000460289 A0A0G2JLW4 131 aa30.17■■■□□ 2.42
PTPN4-208ENST00000460289 GIGYF1O75420 1035 aaPredicted RBP30.17■■■□□ 2.42
PTPN4-208ENST00000460289 GOLGB1Q14789 3259 aaKnown RBP30.16■■■□□ 2.42
PTPN4-208ENST00000460289 PXDNLA1KZ92 1463 aa30.16■■■□□ 2.42
PTPN4-208ENST00000460289 DZIP3Q86Y13 1208 aaKnown RBP30.15■■■□□ 2.42
PTPN4-208ENST00000460289 CHD4Q14839 1912 aa30.14■■■□□ 2.42
PTPN4-208ENST00000460289 KDM3BQ7LBC6 1761 aa30.14■■■□□ 2.42
PTPN4-208ENST00000460289 ANP32CO43423 234 aa30.14■■■□□ 2.42
PTPN4-208ENST00000460289 SERPINB2P05120 415 aa30.14■■■□□ 2.42
PTPN4-208ENST00000460289 DPEP1P16444 411 aa30.14■■■□□ 2.42
PTPN4-208ENST00000460289 PIP4K2AP48426 406 aaPredicted RBP30.14■■■□□ 2.42
PTPN4-208ENST00000460289 CAMTA2O94983 1202 aa30.13■■■□□ 2.41
PTPN4-208ENST00000460289 BICDL1Q6ZP65 573 aa30.13■■■□□ 2.41
PTPN4-208ENST00000460289 WWC3Q9ULE0 1092 aa30.13■■■□□ 2.41
PTPN4-208ENST00000460289 NBPF26B4DH59 902 aa30.12■■■□□ 2.41
PTPN4-208ENST00000460289 NBPF10Q6P3W6 841 aaKnown RBP30.12■■■□□ 2.41
PTPN4-208ENST00000460289 NBPF15Q8N660 670 aa30.12■■■□□ 2.41
PTPN4-208ENST00000460289 TRIM35Q9UPQ4 493 aa30.12■■■□□ 2.41
PTPN4-208ENST00000460289 TBC1D9BQ66K14 1250 aa30.11■■■□□ 2.41
PTPN4-208ENST00000460289 CLEC4GQ6UXB4 293 aa30.1■■■□□ 2.41
PTPN4-208ENST00000460289 SETDB2Q96T68 719 aa30.09■■■□□ 2.41
PTPN4-208ENST00000460289 ZNF652Q9Y2D9 606 aa30.09■■■□□ 2.41
PTPN4-208ENST00000460289 KCNA3P22001 575 aa30.08■■■□□ 2.41
PTPN4-208ENST00000460289 PIM2Q9P1W9 311 aa30.08■■■□□ 2.41
PTPN4-208ENST00000460289 BCS1LQ9Y276 419 aa30.08■■■□□ 2.41
PTPN4-208ENST00000460289 RGL2O15211 777 aa30.07■■■□□ 2.4
PTPN4-208ENST00000460289 CARMIL3Q8ND23 1372 aa30.06■■■□□ 2.4
PTPN4-208ENST00000460289 N4BP2Q86UW6 1770 aaPredicted RBP30.06■■■□□ 2.4
PTPN4-208ENST00000460289 KIAA1551Q9HCM1 1747 aa30.06■■■□□ 2.4
PTPN4-208ENST00000460289 CHL1O00533 1208 aa30.06■■■□□ 2.4
PTPN4-208ENST00000460289 APAF1O14727 1248 aa30.06■■■□□ 2.4
PTPN4-208ENST00000460289 SCN7AQ01118 1682 aa30.05■■■□□ 2.4
PTPN4-208ENST00000460289 CCDC184Q52MB2 194 aa30.05■■■□□ 2.4
PTPN4-208ENST00000460289 LAS1LQ9Y4W2 734 aaKnown RBP30.05■■■□□ 2.4
PTPN4-208ENST00000460289 ERBB4Q15303 1308 aa30.04■■■□□ 2.4
PTPN4-208ENST00000460289 ZNF784Q8NCA9 323 aaPredicted RBP30.04■■■□□ 2.4
PTPN4-208ENST00000460289 LAMB4A4D0S4 1761 aa30.04■■■□□ 2.4
PTPN4-208ENST00000460289 CHRNA5P30532 468 aa30.03■■■□□ 2.4
PTPN4-208ENST00000460289 NRXN2Q9P2S2 1712 aa30.02■■■□□ 2.4
PTPN4-208ENST00000460289 AFDNP55196 1824 aaKnown RBP30.02■■■□□ 2.4
PTPN4-208ENST00000460289 DALRD3Q5D0E6 543 aaKnown RBP30.02■■■□□ 2.4
PTPN4-208ENST00000460289 NGEFQ8N5V2 710 aa30.01■■■□□ 2.39
PTPN4-208ENST00000460289 CFAP44Q96MT7 982 aa30.01■■■□□ 2.39
PTPN4-208ENST00000460289 MRS2Q9HD23 443 aa30.01■■■□□ 2.39
PTPN4-208ENST00000460289 NPHP1O15259 732 aa30■■■□□ 2.39
PTPN4-208ENST00000460289 MYL6BP14649 208 aa30■■■□□ 2.39
PTPN4-208ENST00000460289 EIF2S2P20042 333 aaKnown RBP30■■■□□ 2.39
PTPN4-208ENST00000460289 CALD1Q05682 793 aaKnown RBP30■■■□□ 2.39
PTPN4-208ENST00000460289 BRIP1Q9BX63 1249 aa30■■■□□ 2.39
PTPN4-208ENST00000460289 PDZRN3Q9UPQ7 1066 aa30■■■□□ 2.39
PTPN4-208ENST00000460289 PRR5LQ6MZQ0 368 aa29.99■■■□□ 2.39
PTPN4-208ENST00000460289 CNBD1Q8NA66 436 aa29.99■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms