RNA–Protein interactions for RNA: ENST00000456847.7

CPSF6-203, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 5 BASIC

Gene CPSF6, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-203ENST00000456847 COL15A1P39059 1388 aa21.48■■□□□ 1.03
CPSF6-203ENST00000456847 NFE2L2Q16236 605 aa21.47■■□□□ 1.03
CPSF6-203ENST00000456847 KCNQ3O43525 872 aa21.46■■□□□ 1.03
CPSF6-203ENST00000456847 ZPR1O75312 459 aa21.46■■□□□ 1.03
CPSF6-203ENST00000456847 CANXP27824 592 aaKnown RBP21.46■■□□□ 1.03
CPSF6-203ENST00000456847 TEX13AQ9BXU3 409 aaPredicted RBP21.46■■□□□ 1.03
CPSF6-203ENST00000456847 PARP3Q9Y6F1 533 aa21.45■■□□□ 1.02
CPSF6-203ENST00000456847 KIF13BQ9NQT8 1826 aa21.45■■□□□ 1.02
CPSF6-203ENST00000456847 WDR43Q15061 677 aaKnown RBP eCLIP21.44■■□□□ 1.02
CPSF6-203ENST00000456847 PRKRIP1Q9H875 184 aaPredicted RBP21.44■■□□□ 1.02
CPSF6-203ENST00000456847 FKBP8Q14318 412 aa21.43■■□□□ 1.02
CPSF6-203ENST00000456847 USPL1Q5W0Q7 1092 aa21.43■■□□□ 1.02
CPSF6-203ENST00000456847 ZNF330Q9Y3S2 320 aaPredicted RBP21.43■■□□□ 1.02
CPSF6-203ENST00000456847 KDM3BQ7LBC6 1761 aa21.42■■□□□ 1.02
CPSF6-203ENST00000456847 TAF7Q15545 349 aaPredicted RBP21.42■■□□□ 1.02
CPSF6-203ENST00000456847 C10orf71Q711Q0 1435 aa21.41■■□□□ 1.02
CPSF6-203ENST00000456847 N4BP2Q86UW6 1770 aaPredicted RBP21.41■■□□□ 1.02
CPSF6-203ENST00000456847 NARFQ9UHQ1 456 aa21.41■■□□□ 1.02
CPSF6-203ENST00000456847 NPM2Q86SE8 214 aaKnown RBP21.4■■□□□ 1.02
CPSF6-203ENST00000456847 WWC3Q9ULE0 1092 aa21.4■■□□□ 1.02
CPSF6-203ENST00000456847 LAMB4A4D0S4 1761 aa21.4■■□□□ 1.02
CPSF6-203ENST00000456847 SCN7AQ01118 1682 aa21.4■■□□□ 1.02
CPSF6-203ENST00000456847 A0A087WZG4 1122 aa21.39■■□□□ 1.02
CPSF6-203ENST00000456847 YBX3P16989 372 aaKnown RBP eCLIP21.39■■□□□ 1.02
CPSF6-203ENST00000456847 THUMPD2Q9BTF0 503 aaKnown RBP21.39■■□□□ 1.02
CPSF6-203ENST00000456847 KIAA1551Q9HCM1 1747 aa21.39■■□□□ 1.01
CPSF6-203ENST00000456847 SNRPA1P09661 255 aaKnown RBP21.39■■□□□ 1.01
CPSF6-203ENST00000456847 CCDC146Q8IYE0 955 aa21.39■■□□□ 1.01
CPSF6-203ENST00000456847 PNISRQ8TF01 805 aaKnown RBP21.39■■□□□ 1.01
CPSF6-203ENST00000456847 MIS18AQ9NYP9 233 aa21.39■■□□□ 1.01
CPSF6-203ENST00000456847 GRIN3BO60391 1043 aa21.38■■□□□ 1.01
CPSF6-203ENST00000456847 A1BGP04217 495 aa21.37■■□□□ 1.01
CPSF6-203ENST00000456847 EIF5P55010 431 aaKnown RBP21.37■■□□□ 1.01
CPSF6-203ENST00000456847 RIPK4P57078 832 aa21.37■■□□□ 1.01
CPSF6-203ENST00000456847 DDR1Q08345 913 aa21.37■■□□□ 1.01
CPSF6-203ENST00000456847 PXDNLA1KZ92 1463 aa21.37■■□□□ 1.01
CPSF6-203ENST00000456847 ZNF316A6NFI3 1004 aaPredicted RBP21.37■■□□□ 1.01
CPSF6-203ENST00000456847 AFDNP55196 1824 aaKnown RBP21.36■■□□□ 1.01
CPSF6-203ENST00000456847 PRAMEF22A3QJZ6 481 aa21.36■■□□□ 1.01
CPSF6-203ENST00000456847 IL6STP40189 918 aaPredicted RBP21.36■■□□□ 1.01
CPSF6-203ENST00000456847 USP16Q9Y5T5 823 aa21.36■■□□□ 1.01
CPSF6-203ENST00000456847 LMOD3Q0VAK6 560 aa21.35■■□□□ 1.01
CPSF6-203ENST00000456847 BCORQ6W2J9 1755 aa21.35■■□□□ 1.01
CPSF6-203ENST00000456847 TMPOP42166 694 aaKnown RBP21.35■■□□□ 1.01
CPSF6-203ENST00000456847 TGFB2P61812 414 aa21.35■■□□□ 1.01
CPSF6-203ENST00000456847 POLRMTO00411 1230 aaKnown RBP21.34■■□□□ 1.01
CPSF6-203ENST00000456847 RRP7AQ9Y3A4 280 aaKnown RBP21.34■■□□□ 1.01
CPSF6-203ENST00000456847 TM4SF1P30408 202 aa21.33■■□□□ 1.01
CPSF6-203ENST00000456847 PIP4K2AP48426 406 aaPredicted RBP21.33■■□□□ 1.01
CPSF6-203ENST00000456847 NFIXQ14938 502 aa21.33■■□□□ 1.01
CPSF6-203ENST00000456847 NEUROD2Q15784 382 aa21.33■■□□□ 1.01
CPSF6-203ENST00000456847 RUNDC1Q96C34 613 aa21.33■■□□□ 1.01
CPSF6-203ENST00000456847 BCL2L12Q9HB09 334 aa21.33■■□□□ 1.01
CPSF6-203ENST00000456847 TBC1D2BQ9UPU7 963 aa21.33■■□□□ 1.01
CPSF6-203ENST00000456847 A0A0G2JLW4 131 aa21.32■■□□□ 1
CPSF6-203ENST00000456847 BICDL1Q6ZP65 573 aa21.32■■□□□ 1
CPSF6-203ENST00000456847 ADAMTS8Q9UP79 889 aa21.32■■□□□ 1
CPSF6-203ENST00000456847 BRCA1P38398 1863 aaKnown RBP21.32■■□□□ 1
CPSF6-203ENST00000456847 NRXN2Q9P2S2 1712 aa21.32■■□□□ 1
CPSF6-203ENST00000456847 DPEP1P16444 411 aa21.31■■□□□ 1
CPSF6-203ENST00000456847 TSPYL4Q9UJ04 414 aa21.31■■□□□ 1
CPSF6-203ENST00000456847 DZIP3Q86Y13 1208 aaKnown RBP21.3■■□□□ 1
CPSF6-203ENST00000456847 SERPINB2P05120 415 aa21.29■■□□□ 1
CPSF6-203ENST00000456847 EIF4A1P60842 406 aaKnown RBP21.29■■□□□ 1
CPSF6-203ENST00000456847 BCS1LQ9Y276 419 aa21.29■■□□□ 1
CPSF6-203ENST00000456847 TBC1D9BQ66K14 1250 aa21.28■■□□□ 1
CPSF6-203ENST00000456847 GIGYF1O75420 1035 aaPredicted RBP21.27■■□□□ 1
CPSF6-203ENST00000456847 CAMTA2O94983 1202 aa21.27■■□□□ 1
CPSF6-203ENST00000456847 CARMIL3Q8ND23 1372 aa21.26■□□□□ 0.99
CPSF6-203ENST00000456847 NBPF26B4DH59 902 aa21.25■□□□□ 0.99
CPSF6-203ENST00000456847 NBPF10Q6P3W6 841 aaKnown RBP21.25■□□□□ 0.99
CPSF6-203ENST00000456847 NBPF15Q8N660 670 aa21.25■□□□□ 0.99
CPSF6-203ENST00000456847 ZNF784Q8NCA9 323 aaPredicted RBP21.25■□□□□ 0.99
CPSF6-203ENST00000456847 ARFGEF1Q9Y6D6 1849 aa21.25■□□□□ 0.99
CPSF6-203ENST00000456847 ANP32CO43423 234 aa21.25■□□□□ 0.99
CPSF6-203ENST00000456847 ZNF652Q9Y2D9 606 aa21.25■□□□□ 0.99
CPSF6-203ENST00000456847 DLEC1Q9Y238 1755 aa21.24■□□□□ 0.99
CPSF6-203ENST00000456847 NPHP1O15259 732 aa21.24■□□□□ 0.99
CPSF6-203ENST00000456847 CHRNA5P30532 468 aa21.24■□□□□ 0.99
CPSF6-203ENST00000456847 PIM2Q9P1W9 311 aa21.24■□□□□ 0.99
CPSF6-203ENST00000456847 LAS1LQ9Y4W2 734 aaKnown RBP21.24■□□□□ 0.99
CPSF6-203ENST00000456847 SETDB2Q96T68 719 aa21.23■□□□□ 0.99
CPSF6-203ENST00000456847 BABAM1Q9NWV8 329 aa21.23■□□□□ 0.99
CPSF6-203ENST00000456847 NGEFQ8N5V2 710 aa21.23■□□□□ 0.99
CPSF6-203ENST00000456847 TRIM35Q9UPQ4 493 aa21.23■□□□□ 0.99
CPSF6-203ENST00000456847 ANKRD31Q8N7Z5 1873 aa21.22■□□□□ 0.99
CPSF6-203ENST00000456847 KCNA3P22001 575 aa21.21■□□□□ 0.99
CPSF6-203ENST00000456847 MYL6BP14649 208 aa21.21■□□□□ 0.99
CPSF6-203ENST00000456847 DALRD3Q5D0E6 543 aaKnown RBP21.21■□□□□ 0.99
CPSF6-203ENST00000456847 UTRNP46939 3433 aa21.2■□□□□ 0.98
CPSF6-203ENST00000456847 APAF1O14727 1248 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 CCDC184Q52MB2 194 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 CLEC4GQ6UXB4 293 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 CNBD1Q8NA66 436 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 EIF2S2P20042 333 aaKnown RBP21.19■□□□□ 0.98
CPSF6-203ENST00000456847 PRR5LQ6MZQ0 368 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 KIF6Q6ZMV9 814 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 ARHGAP27Q6ZUM4 889 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 C2CD5Q86YS7 1000 aa21.19■□□□□ 0.98
CPSF6-203ENST00000456847 ST5P78524 1137 aa21.18■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms