RNA–Protein interactions for RNA: ENST00000456847.7

CPSF6-203, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 5 BASIC

Gene CPSF6, Length 1,915 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-203ENST00000456847 PSPHP1O15172 72 aa5.92□□□□□ -1.46
CPSF6-203ENST00000456847 TNP1P09430 55 aa5.91□□□□□ -1.46
CPSF6-203ENST00000456847 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
CPSF6-203ENST00000456847 UQCR11O14957 56 aa5.87□□□□□ -1.47
CPSF6-203ENST00000456847 LCE3AQ5TA76 89 aa5.86□□□□□ -1.47
CPSF6-203ENST00000456847 MT1GP13640 62 aa5.84□□□□□ -1.48
CPSF6-203ENST00000456847 PP632Q6XCG6 107 aa5.83□□□□□ -1.48
CPSF6-203ENST00000456847 DSTQ03001 7570 aaKnown RBP5.8□□□□□ -1.48
CPSF6-203ENST00000456847 MIR22HGQ0VDD5 57 aa5.78□□□□□ -1.48
CPSF6-203ENST00000456847 MT1LQ93083 61 aa5.78□□□□□ -1.48
CPSF6-203ENST00000456847 A6NED7 52 aa5.76□□□□□ -1.49
CPSF6-203ENST00000456847 MT1MQ8N339 61 aa5.75□□□□□ -1.49
CPSF6-203ENST00000456847 KRTAP4-9Q9BYQ8 210 aa5.69□□□□□ -1.5
CPSF6-203ENST00000456847 K7ERS5 55 aa5.64□□□□□ -1.51
CPSF6-203ENST00000456847 KRTAP12-3P60328 96 aa5.62□□□□□ -1.51
CPSF6-203ENST00000456847 KRTAP4-3Q9BYR4 195 aa5.62□□□□□ -1.51
CPSF6-203ENST00000456847 CDC42SE1Q9NRR8 79 aa5.58□□□□□ -1.52
CPSF6-203ENST00000456847 KRTAP25-1Q3LHN0 102 aa5.58□□□□□ -1.52
CPSF6-203ENST00000456847 LCE4AQ5TA78 99 aa5.56□□□□□ -1.52
CPSF6-203ENST00000456847 LCE1DQ5T752 114 aa5.56□□□□□ -1.52
CPSF6-203ENST00000456847 MT4P47944 62 aa5.52□□□□□ -1.53
CPSF6-203ENST00000456847 KRTAP4-7Q9BYR0 210 aa5.5□□□□□ -1.53
CPSF6-203ENST00000456847 KRTAP5-4Q6L8H1 288 aa5.42□□□□□ -1.54
CPSF6-203ENST00000456847 GPR98Q8WXG9 6306 aa5.41□□□□□ -1.54
CPSF6-203ENST00000456847 HMCN1Q96RW7 5635 aa5.36□□□□□ -1.55
CPSF6-203ENST00000456847 KRTAP23-1A1A580 65 aa5.33□□□□□ -1.56
CPSF6-203ENST00000456847 KRTAP4-6Q9BYQ5 205 aa5.33□□□□□ -1.56
CPSF6-203ENST00000456847 ROMO1P60602 79 aa5.29□□□□□ -1.56
CPSF6-203ENST00000456847 PRAC1Q96KF2 57 aa5.27□□□□□ -1.57
CPSF6-203ENST00000456847 KRTAP19-4Q3LI73 84 aa5.27□□□□□ -1.57
CPSF6-203ENST00000456847 KRTAP15-1Q3LI76 137 aa5.26□□□□□ -1.57
CPSF6-203ENST00000456847 KRTAP5-5Q701N2 237 aaPredicted RBP5.23□□□□□ -1.57
CPSF6-203ENST00000456847 LOC100996750A0A140TA64 210 aa5.21□□□□□ -1.58
CPSF6-203ENST00000456847 LUZP6Q538Z0 58 aa5.2□□□□□ -1.58
CPSF6-203ENST00000456847 AHNAK2Q8IVF2 5795 aa5.19□□□□□ -1.58
CPSF6-203ENST00000456847 LCE3CQ5T5A8 94 aa5.17□□□□□ -1.58
CPSF6-203ENST00000456847 KRTAP20-2Q3LI61 65 aa5.15□□□□□ -1.58
CPSF6-203ENST00000456847 KRTAP12-4P60329 112 aa5.14□□□□□ -1.59
CPSF6-203ENST00000456847 SPRR5A0A1B0GTR4 108 aa5.11□□□□□ -1.59
CPSF6-203ENST00000456847 KRTAP5-10Q6L8G5 202 aa5.11□□□□□ -1.59
CPSF6-203ENST00000456847 KRTAP5-3Q6L8H2 238 aa5.03□□□□□ -1.6
CPSF6-203ENST00000456847 SYNE1Q8NF91 8797 aaKnown RBP4.98□□□□□ -1.61
CPSF6-203ENST00000456847 MT1AP04731 61 aa4.92□□□□□ -1.62
CPSF6-203ENST00000456847 KRTAP5-7Q6L8G8 165 aa4.91□□□□□ -1.62
CPSF6-203ENST00000456847 KRTAP6-1Q3LI64 71 aa4.88□□□□□ -1.63
CPSF6-203ENST00000456847 NDUFAF8A1L188 74 aa4.85□□□□□ -1.63
CPSF6-203ENST00000456847 KRTAP9-6A8MVA2 160 aa4.85□□□□□ -1.63
CPSF6-203ENST00000456847 KRTAP5-2Q701N4 177 aa4.76□□□□□ -1.65
CPSF6-203ENST00000456847 KRTAP9-4Q9BYQ2 154 aa4.74□□□□□ -1.65
CPSF6-203ENST00000456847 KRTAP4-11Q9BYQ6 195 aa4.68□□□□□ -1.66
CPSF6-203ENST00000456847 KRTAP6-2Q3LI66 62 aa4.67□□□□□ -1.66
CPSF6-203ENST00000456847 KRTAP5-8O75690 187 aa4.52□□□□□ -1.69
CPSF6-203ENST00000456847 MT3P25713 68 aa4.5□□□□□ -1.69
CPSF6-203ENST00000456847 OBSCNQ5VST9 7968 aa4.39□□□□□ -1.71
CPSF6-203ENST00000456847 KRTAP9-9Q9BYP9 154 aa4.32□□□□□ -1.72
CPSF6-203ENST00000456847 KRTAP5-1Q6L8H4 278 aa4.26□□□□□ -1.73
CPSF6-203ENST00000456847 KRTAP4-12Q9BQ66 201 aa4.26□□□□□ -1.73
CPSF6-203ENST00000456847 MUC5ACP98088 5654 aa4.23□□□□□ -1.73
CPSF6-203ENST00000456847 AHNAKQ09666 5890 aaKnown RBP4.22□□□□□ -1.73
CPSF6-203ENST00000456847 MUC5BQ9HC84 5762 aaPredicted RBP4.21□□□□□ -1.74
CPSF6-203ENST00000456847 INE1O15225 51 aa4.11□□□□□ -1.75
CPSF6-203ENST00000456847 LCE1EQ5T753 118 aa4.09□□□□□ -1.75
CPSF6-203ENST00000456847 LCE1BQ5T7P3 118 aa3.91□□□□□ -1.78
CPSF6-203ENST00000456847 KRTAP4-2Q9BYR5 136 aa3.87□□□□□ -1.79
CPSF6-203ENST00000456847 LCE1CQ5T751 118 aa3.8□□□□□ -1.8
CPSF6-203ENST00000456847 LCE3DQ9BYE3 92 aa3.74□□□□□ -1.81
CPSF6-203ENST00000456847 LCE3EQ5T5B0 92 aa3.53□□□□□ -1.84
CPSF6-203ENST00000456847 KRTAP5-11Q6L8G4 156 aa3.45□□□□□ -1.86
CPSF6-203ENST00000456847 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.45□□□□□ -1.86
CPSF6-203ENST00000456847 LCE1FQ5T754 118 aa3.34□□□□□ -1.87
CPSF6-203ENST00000456847 KRTAP21-2Q3LI59 83 aa3.19□□□□□ -1.9
CPSF6-203ENST00000456847 PHGR1C9JFL3 82 aa3.01□□□□□ -1.93
CPSF6-203ENST00000456847 KRTAP4-4Q9BYR3 166 aa2.97□□□□□ -1.93
CPSF6-203ENST00000456847 PRM1P04553 51 aa2.74□□□□□ -1.97
CPSF6-203ENST00000456847 MUC19Q7Z5P9 8384 aa2.71□□□□□ -1.98
CPSF6-203ENST00000456847 KRTAP21-1Q3LI58 79 aa2.28□□□□□ -2.04
CPSF6-203ENST00000456847 MUC16Q8WXI7 14507 aa1.95□□□□□ -2.1
Retrieved 77 of 20,778 RNA–protein pairs in 49.1 ms