RNA–Protein interactions for RNA: ENST00000455661.5

PTPRE-204, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 2

Gene PTPRE, Length 2,304 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-204ENST00000455661 CTIFO43310 598 aaKnown RBP16.41■□□□□ 0.22
PTPRE-204ENST00000455661 AK2P54819 239 aa16.41■□□□□ 0.22
PTPRE-204ENST00000455661 FEZ1Q99689 392 aa16.41■□□□□ 0.22
PTPRE-204ENST00000455661 ARHGEF10O15013 1369 aa16.41■□□□□ 0.22
PTPRE-204ENST00000455661 CRB1P82279 1406 aa16.41■□□□□ 0.22
PTPRE-204ENST00000455661 RTF1Q92541 710 aaKnown RBP16.41■□□□□ 0.22
PTPRE-204ENST00000455661 SNX14Q9Y5W7 946 aa16.41■□□□□ 0.22
PTPRE-204ENST00000455661 RAD50Q92878 1312 aa16.41■□□□□ 0.22
PTPRE-204ENST00000455661 TTC14Q96N46 770 aa16.4■□□□□ 0.22
PTPRE-204ENST00000455661 MIS18AQ9NYP9 233 aa16.4■□□□□ 0.22
PTPRE-204ENST00000455661 AP5Z1O43299 807 aa16.4■□□□□ 0.22
PTPRE-204ENST00000455661 RAPGEF3O95398 923 aa16.4■□□□□ 0.22
PTPRE-204ENST00000455661 NUDT16Q96DE0 195 aaKnown RBP16.4■□□□□ 0.22
PTPRE-204ENST00000455661 NRKQ7Z2Y5 1582 aa16.39■□□□□ 0.21
PTPRE-204ENST00000455661 SGSM2O43147 1006 aa16.39■□□□□ 0.21
PTPRE-204ENST00000455661 U2AF2P26368 475 aaKnown RBP eCLIP16.39■□□□□ 0.21
PTPRE-204ENST00000455661 RUFY3Q7L099 469 aa16.39■□□□□ 0.21
PTPRE-204ENST00000455661 DIP2CQ9Y2E4 1556 aa16.39■□□□□ 0.21
PTPRE-204ENST00000455661 CPS1P31327 1500 aa16.38■□□□□ 0.21
PTPRE-204ENST00000455661 DNM1Q05193 864 aaKnown RBP16.38■□□□□ 0.21
PTPRE-204ENST00000455661 IL25Q9H293 177 aa16.38■□□□□ 0.21
PTPRE-204ENST00000455661 CCDC61Q9Y6R9 512 aa16.38■□□□□ 0.21
PTPRE-204ENST00000455661 RAB11FIP3O75154 756 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 SYCP1Q15431 976 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 FAM200AQ8TCP9 573 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 LRRFIP2Q9Y608 721 aaKnown RBP16.37■□□□□ 0.21
PTPRE-204ENST00000455661 GJB2P29033 226 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 FLIIQ13045 1269 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 CNTROBQ8N137 903 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 ZSCAN31Q96LW9 406 aaPredicted RBP16.37■□□□□ 0.21
PTPRE-204ENST00000455661 IL1RAPL2Q9NP60 686 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 OGFRQ9NZT2 677 aa16.37■□□□□ 0.21
PTPRE-204ENST00000455661 CCDC30Q5VVM6 783 aa16.36■□□□□ 0.21
PTPRE-204ENST00000455661 NUTM1Q86Y26 1132 aa16.36■□□□□ 0.21
PTPRE-204ENST00000455661 LARP6Q9BRS8 491 aaKnown RBP16.36■□□□□ 0.21
PTPRE-204ENST00000455661 MAP3K11Q16584 847 aa16.36■□□□□ 0.21
PTPRE-204ENST00000455661 LSG1Q9H089 658 aaKnown RBP16.36■□□□□ 0.21
PTPRE-204ENST00000455661 MTMR6Q9Y217 621 aa16.36■□□□□ 0.21
PTPRE-204ENST00000455661 MON2Q7Z3U7 1717 aa16.36■□□□□ 0.21
PTPRE-204ENST00000455661 SOS1Q07889 1333 aaPredicted RBP16.35■□□□□ 0.21
PTPRE-204ENST00000455661 MAP4K4O95819 1239 aaPredicted RBP16.35■□□□□ 0.21
PTPRE-204ENST00000455661 PTGS1P23219 599 aa16.35■□□□□ 0.21
PTPRE-204ENST00000455661 CCDC83Q8IWF9 413 aa16.35■□□□□ 0.21
PTPRE-204ENST00000455661 DRC7Q8IY82 874 aa16.35■□□□□ 0.21
PTPRE-204ENST00000455661 SH2B1Q9NRF2 756 aaPredicted RBP16.35■□□□□ 0.21
PTPRE-204ENST00000455661 SMTNL1A8MU46 457 aa16.35■□□□□ 0.21
PTPRE-204ENST00000455661 UBTFL1P0CB47 393 aaPredicted RBP16.35■□□□□ 0.21
PTPRE-204ENST00000455661 CASTP20810 708 aaKnown RBP16.35■□□□□ 0.21
PTPRE-204ENST00000455661 VPS37CA5D8V6 355 aaPredicted RBP16.34■□□□□ 0.21
PTPRE-204ENST00000455661 PDIA4P13667 645 aaKnown RBP16.34■□□□□ 0.21
PTPRE-204ENST00000455661 TAF3Q5VWG9 929 aa16.34■□□□□ 0.21
PTPRE-204ENST00000455661 FBXO31Q5XUX0 539 aaPredicted RBP16.34■□□□□ 0.21
PTPRE-204ENST00000455661 RASEFQ8IZ41 740 aa16.34■□□□□ 0.21
PTPRE-204ENST00000455661 NUP62CLQ9H1M0 184 aa16.34■□□□□ 0.21
PTPRE-204ENST00000455661 PDRG1Q9NUG6 133 aa16.34■□□□□ 0.21
PTPRE-204ENST00000455661 HYPKQ9NX55 129 aa16.34■□□□□ 0.21
PTPRE-204ENST00000455661 SURF6O75683 361 aaKnown RBP16.33■□□□□ 0.2
PTPRE-204ENST00000455661 KRT85P78386 507 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 VPS53Q5VIR6 699 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 SSH3Q8TE77 659 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 CGNQ9P2M7 1197 aaKnown RBP16.33■□□□□ 0.2
PTPRE-204ENST00000455661 PAXBP1Q9Y5B6 917 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 NEO1Q92859 1461 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 C3P01024 1663 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 A0A0U1RQG5 324 aaPredicted RBP16.33■□□□□ 0.2
PTPRE-204ENST00000455661 TYRO3Q06418 890 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 NCBP1Q09161 790 aaKnown RBP16.33■□□□□ 0.2
PTPRE-204ENST00000455661 CCDC186Q7Z3E2 898 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 PI4K2BQ8TCG2 481 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 RUFY2Q8WXA3 655 aa16.33■□□□□ 0.2
PTPRE-204ENST00000455661 TTC21BQ7Z4L5 1316 aa16.32■□□□□ 0.2
PTPRE-204ENST00000455661 NCKAP5LQ9HCH0 1330 aa16.32■□□□□ 0.2
PTPRE-204ENST00000455661 CWC27Q6UX04 472 aaKnown RBP16.32■□□□□ 0.2
PTPRE-204ENST00000455661 ZNF771Q7L3S4 317 aaPredicted RBP16.32■□□□□ 0.2
PTPRE-204ENST00000455661 RIMBP3CA6NJZ7 1639 aa16.32■□□□□ 0.2
PTPRE-204ENST00000455661 RIMBP3BA6NNM3 1639 aa16.32■□□□□ 0.2
PTPRE-204ENST00000455661 RIMBP3Q9UFD9 1639 aa16.32■□□□□ 0.2
PTPRE-204ENST00000455661 LARGE1O95461 756 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 TNNT1P13805 278 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 MTHFSDQ2M296 383 aaKnown RBP16.31■□□□□ 0.2
PTPRE-204ENST00000455661 HSP90AB2PQ58FF8 381 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 ARHGAP30Q7Z6I6 1101 aaPredicted RBP16.31■□□□□ 0.2
PTPRE-204ENST00000455661 RHPN1Q8TCX5 695 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 CYP46A1Q9Y6A2 500 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 MRVI1Q9Y6F6 885 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 ITSN1Q15811 1721 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 LUZP1Q86V48 1076 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 KIF1BPQ96EK5 621 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 C16orf45Q96MC5 204 aaPredicted RBP16.31■□□□□ 0.2
PTPRE-204ENST00000455661 USP44Q9H0E7 712 aa16.31■□□□□ 0.2
PTPRE-204ENST00000455661 AKAP12Q02952 1782 aa16.3■□□□□ 0.2
PTPRE-204ENST00000455661 GOLGA6L4A6NEF3 574 aa16.3■□□□□ 0.2
PTPRE-204ENST00000455661 FOXO3O43524 673 aa16.3■□□□□ 0.2
PTPRE-204ENST00000455661 GABPB1Q06547 395 aaPredicted RBP16.3■□□□□ 0.2
PTPRE-204ENST00000455661 CCDC112Q8NEF3 446 aa16.3■□□□□ 0.2
PTPRE-204ENST00000455661 JAKMIP1Q96N16 626 aaKnown RBP16.3■□□□□ 0.2
PTPRE-204ENST00000455661 TRIM5Q9C035 493 aa16.3■□□□□ 0.2
PTPRE-204ENST00000455661 TNMDQ9H2S6 317 aa16.3■□□□□ 0.2
PTPRE-204ENST00000455661 SPG7Q9UQ90 795 aa16.3■□□□□ 0.2
PTPRE-204ENST00000455661 ELP1O95163 1332 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms