RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 HYPKQ9NX55 129 aa16.85■□□□□ 0.29
CLK3-203ENST00000454830 KAT6BQ8WYB5 2073 aa16.85■□□□□ 0.29
CLK3-203ENST00000454830 HSP90AB1P08238 724 aaKnown RBP16.85■□□□□ 0.29
CLK3-203ENST00000454830 MEGF6O75095 1541 aa16.84■□□□□ 0.29
CLK3-203ENST00000454830 NCAPD2Q15021 1401 aa16.84■□□□□ 0.29
CLK3-203ENST00000454830 NEXNQ0ZGT2 675 aa16.84■□□□□ 0.29
CLK3-203ENST00000454830 LARP1Q6PKG0 1096 aaKnown RBP16.84■□□□□ 0.29
CLK3-203ENST00000454830 KSR2Q6VAB6 950 aa16.84■□□□□ 0.29
CLK3-203ENST00000454830 SDSP20132 328 aa16.83■□□□□ 0.29
CLK3-203ENST00000454830 BEND3Q5T5X7 828 aa16.83■□□□□ 0.29
CLK3-203ENST00000454830 NUTM1Q86Y26 1132 aa16.83■□□□□ 0.29
CLK3-203ENST00000454830 XAGE3Q8WTP9 111 aa16.83■□□□□ 0.28
CLK3-203ENST00000454830 USP16Q9Y5T5 823 aa16.83■□□□□ 0.28
CLK3-203ENST00000454830 COPS6Q7L5N1 327 aa16.83■□□□□ 0.28
CLK3-203ENST00000454830 FMNL2Q96PY5 1086 aa16.83■□□□□ 0.28
CLK3-203ENST00000454830 DDX21Q9NR30 783 aaKnown RBP eCLIP16.83■□□□□ 0.28
CLK3-203ENST00000454830 JARID2Q92833 1246 aaPredicted RBP16.82■□□□□ 0.28
CLK3-203ENST00000454830 SNRPA1P09661 255 aaKnown RBP16.82■□□□□ 0.28
CLK3-203ENST00000454830 PDE1AP54750 535 aa16.82■□□□□ 0.28
CLK3-203ENST00000454830 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.82■□□□□ 0.28
CLK3-203ENST00000454830 WDR17Q8IZU2 1322 aa16.82■□□□□ 0.28
CLK3-203ENST00000454830 NFKBIBQ15653 356 aa16.81■□□□□ 0.28
CLK3-203ENST00000454830 FOXD4L1Q9NU39 408 aa16.81■□□□□ 0.28
CLK3-203ENST00000454830 IL2RBP14784 551 aa16.81■□□□□ 0.28
CLK3-203ENST00000454830 LRRC37A3O60309 1634 aa16.81■□□□□ 0.28
CLK3-203ENST00000454830 MX1P20591 662 aa16.81■□□□□ 0.28
CLK3-203ENST00000454830 MYD88Q99836 296 aa16.81■□□□□ 0.28
CLK3-203ENST00000454830 SOS2Q07890 1332 aaPredicted RBP16.81■□□□□ 0.28
CLK3-203ENST00000454830 MAP4K4O95819 1239 aaPredicted RBP16.8■□□□□ 0.28
CLK3-203ENST00000454830 BTG4Q9NY30 223 aa16.8■□□□□ 0.28
CLK3-203ENST00000454830 ADCY9O60503 1353 aa16.79■□□□□ 0.28
CLK3-203ENST00000454830 ALS2Q96Q42 1657 aa16.79■□□□□ 0.28
CLK3-203ENST00000454830 KDM6AO15550 1401 aaPredicted RBP16.79■□□□□ 0.28
CLK3-203ENST00000454830 SYTL4Q96C24 671 aaPredicted RBP16.79■□□□□ 0.28
CLK3-203ENST00000454830 ATP5J2-PTCD1G3V325 749 aa16.78■□□□□ 0.28
CLK3-203ENST00000454830 SIL1Q9H173 461 aa16.78■□□□□ 0.28
CLK3-203ENST00000454830 PA2G4Q9UQ80 394 aaKnown RBP16.78■□□□□ 0.28
CLK3-203ENST00000454830 PCDH11XQ9BZA7 1347 aa16.78■□□□□ 0.28
CLK3-203ENST00000454830 PCDH11YQ9BZA8 1340 aa16.78■□□□□ 0.28
CLK3-203ENST00000454830 RBM42Q9BTD8 480 aaKnown RBP16.77■□□□□ 0.28
CLK3-203ENST00000454830 HDAC5Q9UQL6 1122 aa16.77■□□□□ 0.28
CLK3-203ENST00000454830 VIRMAQ69YN4 1812 aaKnown RBP16.77■□□□□ 0.28
CLK3-203ENST00000454830 FRAT2O75474 233 aaPredicted RBP16.77■□□□□ 0.28
CLK3-203ENST00000454830 ADAMTS2O95450 1211 aa16.77■□□□□ 0.28
CLK3-203ENST00000454830 LINS1Q8NG48 757 aa16.77■□□□□ 0.28
CLK3-203ENST00000454830 CHMP3Q9Y3E7 222 aa16.77■□□□□ 0.28
CLK3-203ENST00000454830 CPDO75976 1380 aa16.77■□□□□ 0.27
CLK3-203ENST00000454830 DEKP35659 375 aaKnown RBP16.77■□□□□ 0.27
CLK3-203ENST00000454830 ANKRD13DQ6ZTN6 518 aa16.77■□□□□ 0.27
CLK3-203ENST00000454830 RHPN1Q8TCX5 695 aa16.77■□□□□ 0.27
CLK3-203ENST00000454830 SSH3Q8TE77 659 aa16.77■□□□□ 0.27
CLK3-203ENST00000454830 GRM8O00222 908 aa16.76■□□□□ 0.27
CLK3-203ENST00000454830 ALDH1L1O75891 902 aa16.76■□□□□ 0.27
CLK3-203ENST00000454830 FAM208AQ9UK61 1670 aaKnown RBP16.76■□□□□ 0.27
CLK3-203ENST00000454830 NUTM2BA6NNL0 878 aaPredicted RBP16.75■□□□□ 0.27
CLK3-203ENST00000454830 NUTM2EB1AL46 878 aaPredicted RBP16.75■□□□□ 0.27
CLK3-203ENST00000454830 PIP4K2BP78356 416 aa16.75■□□□□ 0.27
CLK3-203ENST00000454830 NUTM2AQ8IVF1 878 aaPredicted RBP16.75■□□□□ 0.27
CLK3-203ENST00000454830 KIF1BPQ96EK5 621 aa16.75■□□□□ 0.27
CLK3-203ENST00000454830 PHRF1Q9P1Y6 1649 aaKnown RBP16.75■□□□□ 0.27
CLK3-203ENST00000454830 IBTKQ9P2D0 1353 aaPredicted RBP16.75■□□□□ 0.27
CLK3-203ENST00000454830 CCDC9Q9Y3X0 531 aaKnown RBP16.75■□□□□ 0.27
CLK3-203ENST00000454830 HSP90AB4PQ58FF6 505 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 CARD10Q9BWT7 1032 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 LMO7Q8WWI1 1683 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 EIF5BO60841 1220 aaKnown RBP16.74■□□□□ 0.27
CLK3-203ENST00000454830 REC8O95072 547 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 RBM25P49756 843 aaKnown RBP16.74■□□□□ 0.27
CLK3-203ENST00000454830 G3BP1Q13283 466 aaKnown RBP eCLIP16.74■□□□□ 0.27
CLK3-203ENST00000454830 RAB11FIP3O75154 756 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 CLASRPQ8N2M8 674 aaKnown RBP16.74■□□□□ 0.27
CLK3-203ENST00000454830 SUCLG2Q96I99 432 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 ANO2Q9NQ90 1003 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 TMOD3Q9NYL9 352 aa16.74■□□□□ 0.27
CLK3-203ENST00000454830 PDIA6Q15084 440 aa16.73■□□□□ 0.27
CLK3-203ENST00000454830 IFIT2P09913 472 aaKnown RBP16.73■□□□□ 0.27
CLK3-203ENST00000454830 BICC1Q9H694 974 aaKnown RBP16.73■□□□□ 0.27
CLK3-203ENST00000454830 CACNA1FO60840 1977 aa16.73■□□□□ 0.27
CLK3-203ENST00000454830 ERC2O15083 957 aa16.73■□□□□ 0.27
CLK3-203ENST00000454830 A1BGP04217 495 aa16.73■□□□□ 0.27
CLK3-203ENST00000454830 CAMTA1Q9Y6Y1 1673 aa16.72■□□□□ 0.27
CLK3-203ENST00000454830 STRCQ7RTU9 1775 aa16.72■□□□□ 0.27
CLK3-203ENST00000454830 UBE3BQ7Z3V4 1068 aa16.72■□□□□ 0.27
CLK3-203ENST00000454830 ZBTB3Q9H5J0 574 aa16.72■□□□□ 0.27
CLK3-203ENST00000454830 OVOS2A0A0G2JMS6 1433 aa16.72■□□□□ 0.27
CLK3-203ENST00000454830 KLHDC4Q8TBB5 520 aa16.72■□□□□ 0.27
CLK3-203ENST00000454830 PXDNLA1KZ92 1463 aa16.71■□□□□ 0.27
CLK3-203ENST00000454830 A0A087WZG4 1122 aa16.7■□□□□ 0.26
CLK3-203ENST00000454830 IGKV5-2P06315 115 aa16.7■□□□□ 0.26
CLK3-203ENST00000454830 AACSQ86V21 672 aa16.7■□□□□ 0.26
CLK3-203ENST00000454830 METTL22Q9BUU2 404 aaPredicted RBP16.7■□□□□ 0.26
CLK3-203ENST00000454830 NEURL1BA8MQ27 555 aa16.69■□□□□ 0.26
CLK3-203ENST00000454830 POLA2Q14181 598 aa16.69■□□□□ 0.26
CLK3-203ENST00000454830 KDM3BQ7LBC6 1761 aa16.69■□□□□ 0.26
CLK3-203ENST00000454830 HEG1Q9ULI3 1381 aa16.69■□□□□ 0.26
CLK3-203ENST00000454830 UNC5CLQ8IV45 518 aa16.69■□□□□ 0.26
CLK3-203ENST00000454830 GCKRQ14397 625 aa16.69■□□□□ 0.26
CLK3-203ENST00000454830 NOL8Q76FK4 1167 aaKnown RBP16.69■□□□□ 0.26
CLK3-203ENST00000454830 COL5A2P05997 1499 aaPredicted RBP16.69■□□□□ 0.26
CLK3-203ENST00000454830 USP26Q9BXU7 913 aa16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms