RNA–Protein interactions for RNA: ENST00000452162.5

PKP4-206, Transcript of plakophilin 4, humanhuman

TSL 1 (best)

Gene PKP4, Length 2,359 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4-206ENST00000452162 GNAT3A8MTJ3 354 aa13.59□□□□□ -0.23
PKP4-206ENST00000452162 RNMTO43148 476 aaKnown RBP13.59□□□□□ -0.23
PKP4-206ENST00000452162 DCTN1Q14203 1278 aa13.59□□□□□ -0.23
PKP4-206ENST00000452162 TMEM57Q8N5G2 664 aa13.59□□□□□ -0.23
PKP4-206ENST00000452162 RWDD1Q9H446 243 aaPredicted RBP13.59□□□□□ -0.23
PKP4-206ENST00000452162 TMOD3Q9NYL9 352 aa13.59□□□□□ -0.23
PKP4-206ENST00000452162 ITPRIPQ8IWB1 547 aa13.59□□□□□ -0.23
PKP4-206ENST00000452162 LY75O60449 1722 aa13.59□□□□□ -0.23
PKP4-206ENST00000452162 NUP188Q5SRE5 1749 aa13.58□□□□□ -0.24
PKP4-206ENST00000452162 CABP4P57796 275 aa13.58□□□□□ -0.24
PKP4-206ENST00000452162 NPM2Q86SE8 214 aaKnown RBP13.58□□□□□ -0.24
PKP4-206ENST00000452162 NFATC2IPQ8NCF5 419 aa13.58□□□□□ -0.24
PKP4-206ENST00000452162 IL17REQ8NFR9 667 aa13.58□□□□□ -0.24
PKP4-206ENST00000452162 TXNRD1Q16881 649 aa13.58□□□□□ -0.24
PKP4-206ENST00000452162 C8orf58Q8NAV2 365 aa13.58□□□□□ -0.24
PKP4-206ENST00000452162 TWISTNBQ3B726 338 aaPredicted RBP13.57□□□□□ -0.24
PKP4-206ENST00000452162 ARHGAP45Q92619 1136 aa13.57□□□□□ -0.24
PKP4-206ENST00000452162 ASAP1Q9ULH1 1129 aa13.57□□□□□ -0.24
PKP4-206ENST00000452162 KCNQ4P56696 695 aa13.57□□□□□ -0.24
PKP4-206ENST00000452162 ZBTB40Q9NUA8 1239 aa13.57□□□□□ -0.24
PKP4-206ENST00000452162 CHL1O00533 1208 aa13.56□□□□□ -0.24
PKP4-206ENST00000452162 HDAC1Q13547 482 aaPredicted RBP13.56□□□□□ -0.24
PKP4-206ENST00000452162 SLC52A2Q9HAB3 445 aa13.56□□□□□ -0.24
PKP4-206ENST00000452162 MCM10Q7L590 875 aa13.56□□□□□ -0.24
PKP4-206ENST00000452162 LRRC4BQ9NT99 713 aa13.56□□□□□ -0.24
PKP4-206ENST00000452162 PDZRN3Q9UPQ7 1066 aa13.56□□□□□ -0.24
PKP4-206ENST00000452162 PALLDQ8WX93 1383 aa13.56□□□□□ -0.24
PKP4-206ENST00000452162 MRC1P22897 1456 aa13.55□□□□□ -0.24
PKP4-206ENST00000452162 SIPA1L3O60292 1781 aaPredicted RBP13.55□□□□□ -0.24
PKP4-206ENST00000452162 ATG3Q9NT62 314 aa13.55□□□□□ -0.24
PKP4-206ENST00000452162 CEMIPQ8WUJ3 1361 aa13.55□□□□□ -0.24
PKP4-206ENST00000452162 ELL2O00472 640 aaPredicted RBP13.54□□□□□ -0.24
PKP4-206ENST00000452162 ABCC4O15439 1325 aa13.54□□□□□ -0.24
PKP4-206ENST00000452162 RTF1Q92541 710 aaKnown RBP13.54□□□□□ -0.24
PKP4-206ENST00000452162 SMARCC1Q92922 1105 aaPredicted RBP13.53□□□□□ -0.24
PKP4-206ENST00000452162 ZBTB47Q9UFB7 747 aaPredicted RBP13.53□□□□□ -0.24
PKP4-206ENST00000452162 TAF1LQ8IZX4 1826 aa13.53□□□□□ -0.24
PKP4-206ENST00000452162 HTATSF1O43719 755 aaKnown RBP13.52□□□□□ -0.24
PKP4-206ENST00000452162 TEFQ10587 303 aa13.52□□□□□ -0.24
PKP4-206ENST00000452162 SLC39A6Q13433 755 aa13.52□□□□□ -0.24
PKP4-206ENST00000452162 CCNL1Q9UK58 526 aaPredicted RBP13.52□□□□□ -0.24
PKP4-206ENST00000452162 ANO8Q9HCE9 1232 aaPredicted RBP13.52□□□□□ -0.25
PKP4-206ENST00000452162 PAPPAQ13219 1627 aa13.52□□□□□ -0.25
PKP4-206ENST00000452162 SLC27A3Q5K4L6 730 aa13.51□□□□□ -0.25
PKP4-206ENST00000452162 SMC5Q8IY18 1101 aa13.51□□□□□ -0.25
PKP4-206ENST00000452162 LOC102724428A0A0B4J2F2 783 aa13.51□□□□□ -0.25
PKP4-206ENST00000452162 ZBTB7BO15156 539 aaPredicted RBP13.51□□□□□ -0.25
PKP4-206ENST00000452162 SIK1P57059 783 aa13.51□□□□□ -0.25
PKP4-206ENST00000452162 SLC4A9Q96Q91 983 aa13.51□□□□□ -0.25
PKP4-206ENST00000452162 SRCAPQ6ZRS2 3230 aa13.5□□□□□ -0.25
PKP4-206ENST00000452162 PTCD1O75127 700 aaKnown RBP13.5□□□□□ -0.25
PKP4-206ENST00000452162 KRT24Q2M2I5 525 aa13.5□□□□□ -0.25
PKP4-206ENST00000452162 RBM42Q9BTD8 480 aaKnown RBP13.5□□□□□ -0.25
PKP4-206ENST00000452162 API5Q9BZZ5 524 aaKnown RBP13.5□□□□□ -0.25
PKP4-206ENST00000452162 C5P01031 1676 aa13.5□□□□□ -0.25
PKP4-206ENST00000452162 PSDA5PKW4 1024 aaPredicted RBP13.5□□□□□ -0.25
PKP4-206ENST00000452162 UBR2Q8IWV8 1755 aa13.49□□□□□ -0.25
PKP4-206ENST00000452162 R3HDM1Q15032 1099 aaKnown RBP13.49□□□□□ -0.25
PKP4-206ENST00000452162 NBPF14Q5TI25 921 aa13.49□□□□□ -0.25
PKP4-206ENST00000452162 DDRGK1Q96HY6 314 aa13.49□□□□□ -0.25
PKP4-206ENST00000452162 CHMP4BQ9H444 224 aaKnown RBP13.49□□□□□ -0.25
PKP4-206ENST00000452162 ATP6V1AP38606 617 aa13.49□□□□□ -0.25
PKP4-206ENST00000452162 ITPK1Q13572 414 aa13.49□□□□□ -0.25
PKP4-206ENST00000452162 BTBD11A6QL63 1104 aa13.48□□□□□ -0.25
PKP4-206ENST00000452162 KCNQ3O43525 872 aa13.48□□□□□ -0.25
PKP4-206ENST00000452162 ZNF827Q17R98 1081 aa13.48□□□□□ -0.25
PKP4-206ENST00000452162 MIS18AQ9NYP9 233 aa13.48□□□□□ -0.25
PKP4-206ENST00000452162 KCPQ6ZWJ8 1503 aa13.48□□□□□ -0.25
PKP4-206ENST00000452162 TUBGCP6Q96RT7 1819 aa13.48□□□□□ -0.25
PKP4-206ENST00000452162 TAF7Q15545 349 aaPredicted RBP13.47□□□□□ -0.25
PKP4-206ENST00000452162 ZNF790Q6PG37 636 aa13.47□□□□□ -0.25
PKP4-206ENST00000452162 LINC00116Q8NCU8 138 aa13.47□□□□□ -0.25
PKP4-206ENST00000452162 ZNF831Q5JPB2 1677 aa13.47□□□□□ -0.25
PKP4-206ENST00000452162 MYH14Q7Z406 1995 aaKnown RBP13.46□□□□□ -0.25
PKP4-206ENST00000452162 SLC15A2Q16348 729 aa13.46□□□□□ -0.25
PKP4-206ENST00000452162 STK32BQ9NY57 414 aa13.46□□□□□ -0.25
PKP4-206ENST00000452162 C4BP0C0L5 1744 aa13.46□□□□□ -0.25
PKP4-206ENST00000452162 COL5A3P25940 1745 aaPredicted RBP13.46□□□□□ -0.25
PKP4-206ENST00000452162 TJP1Q07157 1748 aa13.46□□□□□ -0.25
PKP4-206ENST00000452162 TTC5Q8N0Z6 440 aa13.46□□□□□ -0.25
PKP4-206ENST00000452162 AKT1S1Q96B36 256 aa13.46□□□□□ -0.25
PKP4-206ENST00000452162 TSPYL4Q9UJ04 414 aa13.46□□□□□ -0.25
PKP4-206ENST00000452162 KDM3BQ7LBC6 1761 aa13.45□□□□□ -0.26
PKP4-206ENST00000452162 INTS3Q68E01 1043 aaKnown RBP13.45□□□□□ -0.26
PKP4-206ENST00000452162 ZNF496Q96IT1 587 aaPredicted RBP13.45□□□□□ -0.26
PKP4-206ENST00000452162 NUCB1Q02818 461 aa13.45□□□□□ -0.26
PKP4-206ENST00000452162 SEC24BO95487 1268 aa13.44□□□□□ -0.26
PKP4-206ENST00000452162 PDGFDQ9GZP0 370 aaPredicted RBP13.44□□□□□ -0.26
PKP4-206ENST00000452162 PTPRCP08575 1304 aa13.44□□□□□ -0.26
PKP4-206ENST00000452162 UBR3Q6ZT12 1888 aa13.44□□□□□ -0.26
PKP4-206ENST00000452162 C1orf115Q9H7X2 142 aa13.44□□□□□ -0.26
PKP4-206ENST00000452162 CICQ96RK0 1608 aaPredicted RBP13.44□□□□□ -0.26
PKP4-206ENST00000452162 SMIM5Q71RC9 77 aa13.43□□□□□ -0.26
PKP4-206ENST00000452162 DNAJC10Q8IXB1 793 aa13.43□□□□□ -0.26
PKP4-206ENST00000452162 SIRT2Q8IXJ6 389 aa13.43□□□□□ -0.26
PKP4-206ENST00000452162 AMIGO3Q86WK7 504 aa13.43□□□□□ -0.26
PKP4-206ENST00000452162 TFCP2L1Q9NZI6 479 aa13.43□□□□□ -0.26
PKP4-206ENST00000452162 HEG1Q9ULI3 1381 aa13.43□□□□□ -0.26
PKP4-206ENST00000452162 QSER1Q2KHR3 1735 aa13.42□□□□□ -0.26
PKP4-206ENST00000452162 FMNL2Q96PY5 1086 aa13.42□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms