RNA–Protein interactions for RNA: ENST00000448404.5

SF1-211, Transcript of splicing factor 1, humanhuman

TSL 1 (best)

Gene SF1, Length 2,778 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF1-211ENST00000448404 ADAMTSL3P82987 1691 aa18.2■□□□□ 0.5
SF1-211ENST00000448404 IBTKQ9P2D0 1353 aaPredicted RBP18.2■□□□□ 0.5
SF1-211ENST00000448404 SALL3Q9BXA9 1300 aa18.19■□□□□ 0.5
SF1-211ENST00000448404 TRAK2O60296 914 aa18.19■□□□□ 0.5
SF1-211ENST00000448404 LARP6Q9BRS8 491 aaKnown RBP18.19■□□□□ 0.5
SF1-211ENST00000448404 ANO2Q9NQ90 1003 aa18.19■□□□□ 0.5
SF1-211ENST00000448404 RGPD5Q99666 1765 aa18.17■□□□□ 0.5
SF1-211ENST00000448404 UPF3BQ9BZI7 483 aaKnown RBP18.17■□□□□ 0.5
SF1-211ENST00000448404 ERC2O15083 957 aa18.17■□□□□ 0.5
SF1-211ENST00000448404 OS9Q13438 667 aaPredicted RBP18.17■□□□□ 0.5
SF1-211ENST00000448404 RAPGEF4Q8WZA2 1011 aa18.17■□□□□ 0.5
SF1-211ENST00000448404 RHPN1Q8TCX5 695 aa18.16■□□□□ 0.5
SF1-211ENST00000448404 SSH3Q8TE77 659 aa18.16■□□□□ 0.5
SF1-211ENST00000448404 PANK2Q9BZ23 570 aa18.16■□□□□ 0.5
SF1-211ENST00000448404 SIL1Q9H173 461 aa18.16■□□□□ 0.5
SF1-211ENST00000448404 C9orf78Q9NZ63 289 aaPredicted RBP18.16■□□□□ 0.5
SF1-211ENST00000448404 NCOA3Q9Y6Q9 1424 aa18.16■□□□□ 0.5
SF1-211ENST00000448404 AMOTQ4VCS5 1084 aa18.15■□□□□ 0.5
SF1-211ENST00000448404 CASC1Q6TDU7 716 aa18.15■□□□□ 0.5
SF1-211ENST00000448404 CHMLP26374 656 aa18.15■□□□□ 0.5
SF1-211ENST00000448404 ZNF496Q96IT1 587 aaPredicted RBP18.15■□□□□ 0.5
SF1-211ENST00000448404 DBF4Q9UBU7 674 aaPredicted RBP18.15■□□□□ 0.5
SF1-211ENST00000448404 USP16Q9Y5T5 823 aa18.15■□□□□ 0.5
SF1-211ENST00000448404 NEK4P51957 841 aa18.14■□□□□ 0.5
SF1-211ENST00000448404 DDX54Q8TDD1 881 aaKnown RBP18.14■□□□□ 0.5
SF1-211ENST00000448404 ESYT1Q9BSJ8 1104 aa18.14■□□□□ 0.5
SF1-211ENST00000448404 ZNF142P52746 1687 aaPredicted RBP18.14■□□□□ 0.49
SF1-211ENST00000448404 FOXD4L6Q3SYB3 417 aaPredicted RBP18.14■□□□□ 0.49
SF1-211ENST00000448404 FOXD4L3Q6VB84 417 aaPredicted RBP18.14■□□□□ 0.49
SF1-211ENST00000448404 OSBPL3Q9H4L5 887 aa18.13■□□□□ 0.49
SF1-211ENST00000448404 CYP27B1O15528 508 aa18.13■□□□□ 0.49
SF1-211ENST00000448404 PDIA6Q15084 440 aa18.13■□□□□ 0.49
SF1-211ENST00000448404 RAB3GAP1Q15042 981 aa18.13■□□□□ 0.49
SF1-211ENST00000448404 RABEP1Q15276 862 aa18.13■□□□□ 0.49
SF1-211ENST00000448404 MED1Q15648 1581 aaPredicted RBP18.12■□□□□ 0.49
SF1-211ENST00000448404 ZNF790Q6PG37 636 aa18.12■□□□□ 0.49
SF1-211ENST00000448404 SUCLG2Q96I99 432 aa18.12■□□□□ 0.49
SF1-211ENST00000448404 BABAM1Q9NWV8 329 aa18.12■□□□□ 0.49
SF1-211ENST00000448404 MEGF6O75095 1541 aa18.12■□□□□ 0.49
SF1-211ENST00000448404 KAZALD1Q96I82 304 aa18.12■□□□□ 0.49
SF1-211ENST00000448404 SPG7Q9UQ90 795 aa18.12■□□□□ 0.49
SF1-211ENST00000448404 CCDC9Q9Y3X0 531 aaKnown RBP18.12■□□□□ 0.49
SF1-211ENST00000448404 REC8O95072 547 aa18.11■□□□□ 0.49
SF1-211ENST00000448404 POLA2Q14181 598 aa18.11■□□□□ 0.49
SF1-211ENST00000448404 PHKG2P15735 406 aa18.11■□□□□ 0.49
SF1-211ENST00000448404 PI4K2BQ8TCG2 481 aa18.11■□□□□ 0.49
SF1-211ENST00000448404 XAGE3Q8WTP9 111 aa18.11■□□□□ 0.49
SF1-211ENST00000448404 NPHP3Q7Z494 1330 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 KDM6AO15550 1401 aaPredicted RBP18.1■□□□□ 0.49
SF1-211ENST00000448404 ATP5J2-PTCD1G3V325 749 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 PTCD1O75127 700 aaKnown RBP18.1■□□□□ 0.49
SF1-211ENST00000448404 CPA1P15085 419 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 CWC27Q6UX04 472 aaKnown RBP18.1■□□□□ 0.49
SF1-211ENST00000448404 COPS6Q7L5N1 327 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 BICC1Q9H694 974 aaKnown RBP18.1■□□□□ 0.49
SF1-211ENST00000448404 MST1RQ04912 1400 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 IGKV5-2P06315 115 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 TPRNQ4KMQ1 711 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 KSR2Q6VAB6 950 aa18.1■□□□□ 0.49
SF1-211ENST00000448404 TLR7Q9NYK1 1049 aaKnown RBP18.1■□□□□ 0.49
SF1-211ENST00000448404 EPHA10Q5JZY3 1008 aa18.09■□□□□ 0.49
SF1-211ENST00000448404 RIC3Q7Z5B4 369 aa18.09■□□□□ 0.49
SF1-211ENST00000448404 CCDC8Q9H0W5 538 aaPredicted RBP18.09■□□□□ 0.49
SF1-211ENST00000448404 NDUFB9Q9Y6M9 179 aa18.09■□□□□ 0.49
SF1-211ENST00000448404 TATP17735 454 aaPredicted RBP18.09■□□□□ 0.49
SF1-211ENST00000448404 SLC52A2Q9HAB3 445 aa18.09■□□□□ 0.49
SF1-211ENST00000448404 USP54Q70EL1 1684 aa18.09■□□□□ 0.49
SF1-211ENST00000448404 SLIT3O75094 1523 aa18.09■□□□□ 0.49
SF1-211ENST00000448404 MYD88Q99836 296 aa18.08■□□□□ 0.49
SF1-211ENST00000448404 XRCC6P12956 609 aaKnown RBP eCLIP18.08■□□□□ 0.481e-7■■■□□ 17.8
SF1-211ENST00000448404 COL9A3Q14050 684 aaPredicted RBP18.08■□□□□ 0.48
SF1-211ENST00000448404 CHGBP05060 677 aa18.07■□□□□ 0.48
SF1-211ENST00000448404 MCTP1Q6DN14 999 aa18.07■□□□□ 0.48
SF1-211ENST00000448404 GAS2L3Q86XJ1 694 aa18.07■□□□□ 0.48
SF1-211ENST00000448404 STRN4Q9NRL3 753 aa18.07■□□□□ 0.48
SF1-211ENST00000448404 STAP2Q9UGK3 403 aa18.07■□□□□ 0.48
SF1-211ENST00000448404 KIF1BPQ96EK5 621 aa18.06■□□□□ 0.48
SF1-211ENST00000448404 EDC3Q96F86 508 aaKnown RBP18.06■□□□□ 0.48
SF1-211ENST00000448404 STRCP1A6NGW2 1772 aa18.06■□□□□ 0.48
SF1-211ENST00000448404 HOXB7P09629 217 aa18.06■□□□□ 0.48
SF1-211ENST00000448404 TRPM3Q9HCF6 1732 aaPredicted RBP18.06■□□□□ 0.48
SF1-211ENST00000448404 KDM3BQ7LBC6 1761 aa18.06■□□□□ 0.48
SF1-211ENST00000448404 GRM8O00222 908 aa18.05■□□□□ 0.48
SF1-211ENST00000448404 AACSQ86V21 672 aa18.05■□□□□ 0.48
SF1-211ENST00000448404 ZDHHC9Q9Y397 364 aa18.05■□□□□ 0.48
SF1-211ENST00000448404 ST18O60284 1047 aa18.05■□□□□ 0.48
SF1-211ENST00000448404 TMX3Q96JJ7 454 aa18.05■□□□□ 0.48
SF1-211ENST00000448404 DDX21Q9NR30 783 aaKnown RBP eCLIP18.05■□□□□ 0.48
SF1-211ENST00000448404 BAG4O95429 457 aaKnown RBP18.04■□□□□ 0.48
SF1-211ENST00000448404 NCLP19338 710 aaKnown RBP18.04■□□□□ 0.48
SF1-211ENST00000448404 RASEFQ8IZ41 740 aa18.04■□□□□ 0.48
SF1-211ENST00000448404 SASH1O94885 1247 aa18.04■□□□□ 0.48
SF1-211ENST00000448404 BRINP3Q76B58 766 aa18.04■□□□□ 0.48
SF1-211ENST00000448404 ZNF330Q9Y3S2 320 aaPredicted RBP18.04■□□□□ 0.48
SF1-211ENST00000448404 HEG1Q9ULI3 1381 aa18.03■□□□□ 0.48
SF1-211ENST00000448404 ZNF335Q9H4Z2 1342 aaPredicted RBP18.03■□□□□ 0.48
SF1-211ENST00000448404 PRDM11Q9NQV5 511 aa18.03■□□□□ 0.48
SF1-211ENST00000448404 LMO7Q8WWI1 1683 aa18.03■□□□□ 0.48
SF1-211ENST00000448404 IFNL2Q8IZJ0 200 aa18.03■□□□□ 0.48
SF1-211ENST00000448404 EAF2Q96CJ1 260 aaPredicted RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 94.7 ms