RNA–Protein interactions for RNA: ENST00000442216.1

CSNK1E-210, Transcript of casein kinase 1 epsilon, humanhuman

TSL 2

Gene CSNK1E, Length 787 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSNK1E-210ENST00000442216 PTGER2P43116 358 aa19.69■□□□□ 0.74
CSNK1E-210ENST00000442216 DIEXFQ68CQ4 756 aaKnown RBP19.69■□□□□ 0.74
CSNK1E-210ENST00000442216 SGIP1Q9BQI5 828 aa19.69■□□□□ 0.74
CSNK1E-210ENST00000442216 MIS18AQ9NYP9 233 aa19.69■□□□□ 0.74
CSNK1E-210ENST00000442216 ATF5Q9Y2D1 282 aaPredicted RBP19.69■□□□□ 0.74
CSNK1E-210ENST00000442216 CALD1Q05682 793 aaKnown RBP19.68■□□□□ 0.74
CSNK1E-210ENST00000442216 CCDC27Q2M243 656 aa19.68■□□□□ 0.74
CSNK1E-210ENST00000442216 TSPYL4Q9UJ04 414 aa19.68■□□□□ 0.74
CSNK1E-210ENST00000442216 EIF4A1P60842 406 aaKnown RBP19.67■□□□□ 0.74
CSNK1E-210ENST00000442216 CHL1O00533 1208 aa19.66■□□□□ 0.74
CSNK1E-210ENST00000442216 FAM9BQ8IZU0 186 aa19.66■□□□□ 0.74
CSNK1E-210ENST00000442216 ARHGEF1Q92888 912 aaKnown RBP19.66■□□□□ 0.74
CSNK1E-210ENST00000442216 SOS1Q07889 1333 aaPredicted RBP19.66■□□□□ 0.74
CSNK1E-210ENST00000442216 POLD1P28340 1107 aa19.65■□□□□ 0.74
CSNK1E-210ENST00000442216 RFC4P35249 363 aa19.65■□□□□ 0.74
CSNK1E-210ENST00000442216 SMIM5Q71RC9 77 aa19.65■□□□□ 0.74
CSNK1E-210ENST00000442216 NGEFQ8N5V2 710 aa19.65■□□□□ 0.74
CSNK1E-210ENST00000442216 CFAP44Q96MT7 982 aa19.65■□□□□ 0.74
CSNK1E-210ENST00000442216 ZBTB1Q9Y2K1 713 aa19.65■□□□□ 0.74
CSNK1E-210ENST00000442216 USP16Q9Y5T5 823 aa19.65■□□□□ 0.74
CSNK1E-210ENST00000442216 GIGYF1O75420 1035 aaPredicted RBP19.64■□□□□ 0.73
CSNK1E-210ENST00000442216 PPP1R1BQ9UD71 204 aaPredicted RBP19.64■□□□□ 0.73
CSNK1E-210ENST00000442216 COL15A1P39059 1388 aa19.63■□□□□ 0.73
CSNK1E-210ENST00000442216 IL6STP40189 918 aaPredicted RBP19.63■□□□□ 0.73
CSNK1E-210ENST00000442216 EIF5P55010 431 aaKnown RBP19.63■□□□□ 0.73
CSNK1E-210ENST00000442216 A0A087WZG4 1122 aa19.62■□□□□ 0.73
CSNK1E-210ENST00000442216 ZNF853P0CG23 659 aa19.62■□□□□ 0.73
CSNK1E-210ENST00000442216 IFT57Q9NWB7 429 aa19.62■□□□□ 0.73
CSNK1E-210ENST00000442216 USP42Q9H9J4 1324 aaKnown RBP19.61■□□□□ 0.73
CSNK1E-210ENST00000442216 PRAMEF22A3QJZ6 481 aa19.61■□□□□ 0.73
CSNK1E-210ENST00000442216 CANXP27824 592 aaKnown RBP19.61■□□□□ 0.73
CSNK1E-210ENST00000442216 GNAI1P63096 354 aa19.61■□□□□ 0.73
CSNK1E-210ENST00000442216 NLGN1Q8N2Q7 840 aa19.61■□□□□ 0.73
CSNK1E-210ENST00000442216 ARXQ96QS3 562 aa19.61■□□□□ 0.73
CSNK1E-210ENST00000442216 A1BGP04217 495 aa19.6■□□□□ 0.73
CSNK1E-210ENST00000442216 GYS1P13807 737 aa19.6■□□□□ 0.73
CSNK1E-210ENST00000442216 WWC1Q8IX03 1113 aa19.6■□□□□ 0.73
CSNK1E-210ENST00000442216 NARFQ9UHQ1 456 aa19.6■□□□□ 0.73
CSNK1E-210ENST00000442216 LAS1LQ9Y4W2 734 aaKnown RBP19.6■□□□□ 0.73
CSNK1E-210ENST00000442216 ZPR1O75312 459 aa19.59■□□□□ 0.73
CSNK1E-210ENST00000442216 MSL1Q68DK7 614 aa19.59■□□□□ 0.73
CSNK1E-210ENST00000442216 NPM2Q86SE8 214 aaKnown RBP19.59■□□□□ 0.73
CSNK1E-210ENST00000442216 IL16Q14005 1332 aa19.58■□□□□ 0.73
CSNK1E-210ENST00000442216 ERBB4Q15303 1308 aa19.58■□□□□ 0.73
CSNK1E-210ENST00000442216 BCORQ6W2J9 1755 aa19.58■□□□□ 0.73
CSNK1E-210ENST00000442216 SCN7AQ01118 1682 aa19.58■□□□□ 0.72
CSNK1E-210ENST00000442216 HOXB7P09629 217 aa19.57■□□□□ 0.72
CSNK1E-210ENST00000442216 MBIPQ9NS73 344 aa19.57■□□□□ 0.72
CSNK1E-210ENST00000442216 WDR63Q8IWG1 891 aa19.56■□□□□ 0.72
CSNK1E-210ENST00000442216 SRP68Q9UHB9 627 aaKnown RBP19.56■□□□□ 0.72
CSNK1E-210ENST00000442216 USPL1Q5W0Q7 1092 aa19.55■□□□□ 0.72
CSNK1E-210ENST00000442216 MIER1Q8N108 512 aa19.55■□□□□ 0.72
CSNK1E-210ENST00000442216 KIF13BQ9NQT8 1826 aa19.54■□□□□ 0.72
CSNK1E-210ENST00000442216 NBPF26B4DH59 902 aa19.54■□□□□ 0.72
CSNK1E-210ENST00000442216 RGL2O15211 777 aa19.54■□□□□ 0.72
CSNK1E-210ENST00000442216 NBPF10Q6P3W6 841 aaKnown RBP19.54■□□□□ 0.72
CSNK1E-210ENST00000442216 NBPF15Q8N660 670 aa19.54■□□□□ 0.72
CSNK1E-210ENST00000442216 FHDC1Q9C0D6 1143 aaPredicted RBP19.53■□□□□ 0.72
CSNK1E-210ENST00000442216 MMP10P09238 476 aa19.52■□□□□ 0.72
CSNK1E-210ENST00000442216 FKBP8Q14318 412 aa19.52■□□□□ 0.72
CSNK1E-210ENST00000442216 SYT17Q9BSW7 474 aa19.52■□□□□ 0.72
CSNK1E-210ENST00000442216 ZNF330Q9Y3S2 320 aaPredicted RBP19.52■□□□□ 0.72
CSNK1E-210ENST00000442216 AFDNP55196 1824 aaKnown RBP19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 TM4SF1P30408 202 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 PIP4K2AP48426 406 aaPredicted RBP19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 DZIP3Q86Y13 1208 aaKnown RBP19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 CHMP4AQ9BY43 222 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 BCL2L12Q9HB09 334 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 TBC1D2BQ9UPU7 963 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 CD2APQ9Y5K6 639 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 PARP3Q9Y6F1 533 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 NUP98P52948 1817 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 NRXN2Q9P2S2 1712 aa19.51■□□□□ 0.71
CSNK1E-210ENST00000442216 SENP3-EIF4A1A0A087X0R7 540 aa19.5■□□□□ 0.71
CSNK1E-210ENST00000442216 CAMTA2O94983 1202 aa19.5■□□□□ 0.71
CSNK1E-210ENST00000442216 EIF2S2P20042 333 aaKnown RBP19.5■□□□□ 0.71
CSNK1E-210ENST00000442216 KRT24Q2M2I5 525 aa19.5■□□□□ 0.71
CSNK1E-210ENST00000442216 DUSP27Q5VZP5 1158 aa19.5■□□□□ 0.71
CSNK1E-210ENST00000442216 CLEC4GQ6UXB4 293 aa19.5■□□□□ 0.71
CSNK1E-210ENST00000442216 SALL2Q9Y467 1007 aaPredicted RBP19.49■□□□□ 0.71
CSNK1E-210ENST00000442216 CACNA1FO60840 1977 aa19.49■□□□□ 0.71
CSNK1E-210ENST00000442216 SRCAPQ6ZRS2 3230 aa19.49■□□□□ 0.71
CSNK1E-210ENST00000442216 ZNF521Q96K83 1311 aa19.49■□□□□ 0.71
CSNK1E-210ENST00000442216 PDIA6Q15084 440 aa19.48■□□□□ 0.71
CSNK1E-210ENST00000442216 ERVV-1B6SEH8 477 aa19.47■□□□□ 0.71
CSNK1E-210ENST00000442216 NFIXQ14938 502 aa19.47■□□□□ 0.71
CSNK1E-210ENST00000442216 HDGFL1Q5TGJ6 251 aa19.47■□□□□ 0.71
CSNK1E-210ENST00000442216 DDX21Q9NR30 783 aaKnown RBP eCLIP19.47■□□□□ 0.71
CSNK1E-210ENST00000442216 ZNF652Q9Y2D9 606 aa19.47■□□□□ 0.71
CSNK1E-210ENST00000442216 POLRMTO00411 1230 aaKnown RBP19.46■□□□□ 0.71
CSNK1E-210ENST00000442216 MYL6BP14649 208 aa19.46■□□□□ 0.71
CSNK1E-210ENST00000442216 DDR1Q08345 913 aa19.46■□□□□ 0.71
CSNK1E-210ENST00000442216 LRP10Q7Z4F1 713 aa19.46■□□□□ 0.71
CSNK1E-210ENST00000442216 DBF4Q9UBU7 674 aaPredicted RBP19.46■□□□□ 0.71
CSNK1E-210ENST00000442216 C10orf71Q711Q0 1435 aa19.45■□□□□ 0.7
CSNK1E-210ENST00000442216 KLHL34Q8N239 644 aa19.45■□□□□ 0.7
CSNK1E-210ENST00000442216 C8orf58Q8NAV2 365 aa19.45■□□□□ 0.7
CSNK1E-210ENST00000442216 TSR2Q969E8 191 aaKnown RBP19.45■□□□□ 0.7
CSNK1E-210ENST00000442216 TBC1D9BQ66K14 1250 aa19.44■□□□□ 0.7
CSNK1E-210ENST00000442216 KIF6Q6ZMV9 814 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms