RNA–Protein interactions for RNA: ENST00000439120.1

AC004540.1-201, humanhuman

TSL 2 BASIC

Gene AC004540.1, Length 891 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AC004540.1-201ENST00000439120 PHACTR3Q96KR7 559 aa24.64■■□□□ 1.54
AC004540.1-201ENST00000439120 SIPA1L3O60292 1781 aaPredicted RBP24.63■■□□□ 1.53
AC004540.1-201ENST00000439120 CANXP27824 592 aaKnown RBP24.63■■□□□ 1.53
AC004540.1-201ENST00000439120 C1QTNF8P60827 252 aa24.63■■□□□ 1.53
AC004540.1-201ENST00000439120 DPEP1P16444 411 aa24.62■■□□□ 1.53
AC004540.1-201ENST00000439120 DDR1Q08345 913 aa24.62■■□□□ 1.53
AC004540.1-201ENST00000439120 RTF1Q92541 710 aaKnown RBP24.62■■□□□ 1.53
AC004540.1-201ENST00000439120 FCHSD2O94868 740 aa24.61■■□□□ 1.53
AC004540.1-201ENST00000439120 ZNF496Q96IT1 587 aaPredicted RBP24.61■■□□□ 1.53
AC004540.1-201ENST00000439120 TEX13AQ9BXU3 409 aaPredicted RBP24.61■■□□□ 1.53
AC004540.1-201ENST00000439120 NARFQ9UHQ1 456 aa24.61■■□□□ 1.53
AC004540.1-201ENST00000439120 HEG1Q9ULI3 1381 aa24.61■■□□□ 1.53
AC004540.1-201ENST00000439120 CEMIPQ8WUJ3 1361 aa24.6■■□□□ 1.53
AC004540.1-201ENST00000439120 FMNL2Q96PY5 1086 aa24.6■■□□□ 1.53
AC004540.1-201ENST00000439120 BTBD11A6QL63 1104 aa24.59■■□□□ 1.53
AC004540.1-201ENST00000439120 POLRMTO00411 1230 aaKnown RBP24.59■■□□□ 1.53
AC004540.1-201ENST00000439120 GPBP1L1Q9HC44 474 aaPredicted RBP24.59■■□□□ 1.53
AC004540.1-201ENST00000439120 ADCY9O60503 1353 aa24.58■■□□□ 1.53
AC004540.1-201ENST00000439120 NEFMP07197 916 aa24.58■■□□□ 1.53
AC004540.1-201ENST00000439120 TM4SF1P30408 202 aa24.58■■□□□ 1.53
AC004540.1-201ENST00000439120 NPM2Q86SE8 214 aaKnown RBP24.58■■□□□ 1.53
AC004540.1-201ENST00000439120 ZNF526Q8TF50 670 aaPredicted RBP24.58■■□□□ 1.53
AC004540.1-201ENST00000439120 ZNF330Q9Y3S2 320 aaPredicted RBP24.58■■□□□ 1.53
AC004540.1-201ENST00000439120 A0A087WZG4 1122 aa24.57■■□□□ 1.52
AC004540.1-201ENST00000439120 SENP3-EIF4A1A0A087X0R7 540 aa24.57■■□□□ 1.52
AC004540.1-201ENST00000439120 ARHGAP27Q6ZUM4 889 aa24.57■■□□□ 1.52
AC004540.1-201ENST00000439120 PIM2Q9P1W9 311 aa24.57■■□□□ 1.52
AC004540.1-201ENST00000439120 BRCA1P38398 1863 aaKnown RBP24.57■■□□□ 1.52
AC004540.1-201ENST00000439120 NFIXQ14938 502 aa24.55■■□□□ 1.52
AC004540.1-201ENST00000439120 MCM10Q7L590 875 aa24.54■■□□□ 1.52
AC004540.1-201ENST00000439120 KCNA3P22001 575 aa24.53■■□□□ 1.52
AC004540.1-201ENST00000439120 EIF5P55010 431 aaKnown RBP24.53■■□□□ 1.52
AC004540.1-201ENST00000439120 DALRD3Q5D0E6 543 aaKnown RBP24.53■■□□□ 1.52
AC004540.1-201ENST00000439120 AFDNP55196 1824 aaKnown RBP24.53■■□□□ 1.52
AC004540.1-201ENST00000439120 ARFGEF1Q9Y6D6 1849 aa24.52■■□□□ 1.52
AC004540.1-201ENST00000439120 CHRNA5P30532 468 aa24.52■■□□□ 1.52
AC004540.1-201ENST00000439120 BCL2L12Q9HB09 334 aa24.52■■□□□ 1.52
AC004540.1-201ENST00000439120 KCNQ3O43525 872 aa24.51■■□□□ 1.51
AC004540.1-201ENST00000439120 HTATSF1O43719 755 aaKnown RBP24.51■■□□□ 1.51
AC004540.1-201ENST00000439120 SERPINB2P05120 415 aa24.51■■□□□ 1.51
AC004540.1-201ENST00000439120 IL6STP40189 918 aaPredicted RBP24.51■■□□□ 1.51
AC004540.1-201ENST00000439120 BICDL1Q6ZP65 573 aa24.51■■□□□ 1.51
AC004540.1-201ENST00000439120 A1BGP04217 495 aa24.49■■□□□ 1.51
AC004540.1-201ENST00000439120 DCTN1Q14203 1278 aa24.49■■□□□ 1.51
AC004540.1-201ENST00000439120 TBC1D2BQ9UPU7 963 aa24.49■■□□□ 1.51
AC004540.1-201ENST00000439120 SCN7AQ01118 1682 aa24.49■■□□□ 1.51
AC004540.1-201ENST00000439120 NRXN2Q9P2S2 1712 aa24.49■■□□□ 1.51
AC004540.1-201ENST00000439120 PNNQ9H307 717 aaKnown RBP24.47■■□□□ 1.51
AC004540.1-201ENST00000439120 SNRPA1P09661 255 aaKnown RBP24.46■■□□□ 1.51
AC004540.1-201ENST00000439120 TBC1D9BQ66K14 1250 aa24.45■■□□□ 1.5
AC004540.1-201ENST00000439120 MAPK8IP3Q9UPT6 1336 aa24.44■■□□□ 1.5
AC004540.1-201ENST00000439120 NPHP1O15259 732 aa24.44■■□□□ 1.5
AC004540.1-201ENST00000439120 TAF7Q15545 349 aaPredicted RBP24.44■■□□□ 1.5
AC004540.1-201ENST00000439120 USP16Q9Y5T5 823 aa24.44■■□□□ 1.5
AC004540.1-201ENST00000439120 CARMIL3Q8ND23 1372 aa24.43■■□□□ 1.5
AC004540.1-201ENST00000439120 DLG5Q8TDM6 1919 aa24.43■■□□□ 1.5
AC004540.1-201ENST00000439120 DZIP3Q86Y13 1208 aaKnown RBP24.43■■□□□ 1.5
AC004540.1-201ENST00000439120 C2CD5Q86YS7 1000 aa24.43■■□□□ 1.5
AC004540.1-201ENST00000439120 H0YIN7 160 aa24.42■■□□□ 1.5
AC004540.1-201ENST00000439120 RALBP1Q15311 655 aa24.42■■□□□ 1.5
AC004540.1-201ENST00000439120 C9orf131Q5VYM1 1079 aa24.42■■□□□ 1.5
AC004540.1-201ENST00000439120 SETDB2Q96T68 719 aa24.42■■□□□ 1.5
AC004540.1-201ENST00000439120 DLEC1Q9Y238 1755 aa24.42■■□□□ 1.5
AC004540.1-201ENST00000439120 PRAMEF22A3QJZ6 481 aa24.41■■□□□ 1.5
AC004540.1-201ENST00000439120 PIP4K2AP48426 406 aaPredicted RBP24.41■■□□□ 1.5
AC004540.1-201ENST00000439120 BCORQ6W2J9 1755 aa24.4■■□□□ 1.5
AC004540.1-201ENST00000439120 CAMTA2O94983 1202 aa24.4■■□□□ 1.5
AC004540.1-201ENST00000439120 NFE2L2Q16236 605 aa24.4■■□□□ 1.5
AC004540.1-201ENST00000439120 PNISRQ8TF01 805 aaKnown RBP24.4■■□□□ 1.5
AC004540.1-201ENST00000439120 PDE6BP35913 854 aa24.39■■□□□ 1.49
AC004540.1-201ENST00000439120 TTLL6Q8N841 843 aa24.39■■□□□ 1.49
AC004540.1-201ENST00000439120 PLEKHF1Q96S99 279 aa24.39■■□□□ 1.49
AC004540.1-201ENST00000439120 MIS18AQ9NYP9 233 aa24.39■■□□□ 1.49
AC004540.1-201ENST00000439120 RNF181Q9P0P0 153 aa24.39■■□□□ 1.49
AC004540.1-201ENST00000439120 ZNF652Q9Y2D9 606 aa24.39■■□□□ 1.49
AC004540.1-201ENST00000439120 DDX10Q13206 875 aaKnown RBP24.38■■□□□ 1.49
AC004540.1-201ENST00000439120 CNBD1Q8NA66 436 aa24.38■■□□□ 1.49
AC004540.1-201ENST00000439120 PDZRN3Q9UPQ7 1066 aa24.38■■□□□ 1.49
AC004540.1-201ENST00000439120 ST5P78524 1137 aa24.37■■□□□ 1.49
AC004540.1-201ENST00000439120 PRR5LQ6MZQ0 368 aa24.37■■□□□ 1.49
AC004540.1-201ENST00000439120 BRIP1Q9BX63 1249 aa24.37■■□□□ 1.49
AC004540.1-201ENST00000439120 LAMB4A4D0S4 1761 aa24.37■■□□□ 1.49
AC004540.1-201ENST00000439120 ZNF622Q969S3 477 aaKnown RBP eCLIP24.36■■□□□ 1.49
AC004540.1-201ENST00000439120 ANKRD31Q8N7Z5 1873 aa24.35■■□□□ 1.49
AC004540.1-201ENST00000439120 KIF3CO14782 793 aa24.35■■□□□ 1.49
AC004540.1-201ENST00000439120 CCDC24Q8N4L8 307 aa24.35■■□□□ 1.49
AC004540.1-201ENST00000439120 KDM3BQ7LBC6 1761 aa24.34■■□□□ 1.49
AC004540.1-201ENST00000439120 CLEC4GQ6UXB4 293 aa24.34■■□□□ 1.49
AC004540.1-201ENST00000439120 SBF1O95248 1867 aa24.33■■□□□ 1.49
AC004540.1-201ENST00000439120 RASSF7Q02833 373 aa24.33■■□□□ 1.49
AC004540.1-201ENST00000439120 THUMPD2Q9BTF0 503 aaKnown RBP24.33■■□□□ 1.49
AC004540.1-201ENST00000439120 KDM2BQ8NHM5 1336 aa24.33■■□□□ 1.48
AC004540.1-201ENST00000439120 NBPF26B4DH59 902 aa24.32■■□□□ 1.48
AC004540.1-201ENST00000439120 NBPF10Q6P3W6 841 aaKnown RBP24.32■■□□□ 1.48
AC004540.1-201ENST00000439120 NBPF5PQ86XG9 351 aaPredicted RBP24.32■■□□□ 1.48
AC004540.1-201ENST00000439120 NBPF15Q8N660 670 aa24.32■■□□□ 1.48
AC004540.1-201ENST00000439120 MYBBP1AQ9BQG0 1328 aaKnown RBP24.32■■□□□ 1.48
AC004540.1-201ENST00000439120 NMRK2Q9NPI5 230 aa24.31■■□□□ 1.48
AC004540.1-201ENST00000439120 COL11A2P13942 1736 aaPredicted RBP24.3■■□□□ 1.48
AC004540.1-201ENST00000439120 LMNB1P20700 586 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms