RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 CD2APQ9Y5K6 639 aa32.6■■■□□ 2.81
RAPGEF1-206ENST00000438647 MMP10P09238 476 aa32.59■■■□□ 2.81
RAPGEF1-206ENST00000438647 RIPK4P57078 832 aa32.59■■■□□ 2.81
RAPGEF1-206ENST00000438647 LMOD3Q0VAK6 560 aa32.59■■■□□ 2.81
RAPGEF1-206ENST00000438647 RUNDC1Q96C34 613 aa32.59■■■□□ 2.81
RAPGEF1-206ENST00000438647 TMPOP42166 694 aaKnown RBP32.58■■■□□ 2.81
RAPGEF1-206ENST00000438647 ADAMTS8Q9UP79 889 aa32.58■■■□□ 2.81
RAPGEF1-206ENST00000438647 COL15A1P39059 1388 aa32.58■■■□□ 2.81
RAPGEF1-206ENST00000438647 ZPR1O75312 459 aa32.57■■■□□ 2.8
RAPGEF1-206ENST00000438647 CANXP27824 592 aaKnown RBP32.56■■■□□ 2.8
RAPGEF1-206ENST00000438647 CCDC146Q8IYE0 955 aa32.56■■■□□ 2.8
RAPGEF1-206ENST00000438647 SNRPA1P09661 255 aaKnown RBP32.55■■■□□ 2.8
RAPGEF1-206ENST00000438647 SRP68Q9UHB9 627 aaKnown RBP32.55■■■□□ 2.8
RAPGEF1-206ENST00000438647 ANP32CO43423 234 aa32.54■■■□□ 2.8
RAPGEF1-206ENST00000438647 NLGN2Q8NFZ4 835 aa32.54■■■□□ 2.8
RAPGEF1-206ENST00000438647 THUMPD2Q9BTF0 503 aaKnown RBP32.53■■■□□ 2.8
RAPGEF1-206ENST00000438647 A0A087WZG4 1122 aa32.52■■■□□ 2.8
RAPGEF1-206ENST00000438647 NPM2Q86SE8 214 aaKnown RBP32.52■■■□□ 2.8
RAPGEF1-206ENST00000438647 MIS18AQ9NYP9 233 aa32.52■■■□□ 2.8
RAPGEF1-206ENST00000438647 NARFQ9UHQ1 456 aa32.52■■■□□ 2.8
RAPGEF1-206ENST00000438647 PARP3Q9Y6F1 533 aa32.52■■■□□ 2.8
RAPGEF1-206ENST00000438647 EIF5P55010 431 aaKnown RBP32.51■■■□□ 2.79
RAPGEF1-206ENST00000438647 IL6STP40189 918 aaPredicted RBP32.5■■■□□ 2.79
RAPGEF1-206ENST00000438647 USPL1Q5W0Q7 1092 aa32.5■■■□□ 2.79
RAPGEF1-206ENST00000438647 FKBP8Q14318 412 aa32.49■■■□□ 2.79
RAPGEF1-206ENST00000438647 GPR162Q16538 588 aa32.49■■■□□ 2.79
RAPGEF1-206ENST00000438647 USP16Q9Y5T5 823 aa32.49■■■□□ 2.79
RAPGEF1-206ENST00000438647 NEUROD2Q15784 382 aa32.48■■■□□ 2.79
RAPGEF1-206ENST00000438647 RRP7AQ9Y3A4 280 aaKnown RBP32.48■■■□□ 2.79
RAPGEF1-206ENST00000438647 UTRNP46939 3433 aa32.47■■■□□ 2.79
RAPGEF1-206ENST00000438647 A1BGP04217 495 aa32.47■■■□□ 2.79
RAPGEF1-206ENST00000438647 KDM3BQ7LBC6 1761 aa32.46■■■□□ 2.79
RAPGEF1-206ENST00000438647 BABAM1Q9NWV8 329 aa32.46■■■□□ 2.79
RAPGEF1-206ENST00000438647 ZNF330Q9Y3S2 320 aaPredicted RBP32.46■■■□□ 2.79
RAPGEF1-206ENST00000438647 TSPYL4Q9UJ04 414 aa32.45■■■□□ 2.79
RAPGEF1-206ENST00000438647 PRAMEF22A3QJZ6 481 aa32.44■■■□□ 2.78
RAPGEF1-206ENST00000438647 PELP1Q8IZL8 1130 aaKnown RBP32.44■■■□□ 2.78
RAPGEF1-206ENST00000438647 GOLGB1Q14789 3259 aaKnown RBP32.43■■■□□ 2.78
RAPGEF1-206ENST00000438647 EIF4A1P60842 406 aaKnown RBP32.43■■■□□ 2.78
RAPGEF1-206ENST00000438647 TM4SF1P30408 202 aa32.41■■■□□ 2.78
RAPGEF1-206ENST00000438647 C10orf71Q711Q0 1435 aa32.41■■■□□ 2.78
RAPGEF1-206ENST00000438647 GIGYF1O75420 1035 aaPredicted RBP32.4■■■□□ 2.78
RAPGEF1-206ENST00000438647 TRIM35Q9UPQ4 493 aa32.4■■■□□ 2.78
RAPGEF1-206ENST00000438647 TGFB2P61812 414 aa32.39■■■□□ 2.78
RAPGEF1-206ENST00000438647 DDR1Q08345 913 aa32.39■■■□□ 2.78
RAPGEF1-206ENST00000438647 BCL2L12Q9HB09 334 aa32.39■■■□□ 2.78
RAPGEF1-206ENST00000438647 POLRMTO00411 1230 aaKnown RBP32.38■■■□□ 2.77
RAPGEF1-206ENST00000438647 TBC1D2BQ9UPU7 963 aa32.38■■■□□ 2.77
RAPGEF1-206ENST00000438647 LAMB4A4D0S4 1761 aa32.37■■■□□ 2.77
RAPGEF1-206ENST00000438647 NFIXQ14938 502 aa32.37■■■□□ 2.77
RAPGEF1-206ENST00000438647 CCDC184Q52MB2 194 aa32.37■■■□□ 2.77
RAPGEF1-206ENST00000438647 MRS2Q9HD23 443 aa32.37■■■□□ 2.77
RAPGEF1-206ENST00000438647 KIF13BQ9NQT8 1826 aa32.37■■■□□ 2.77
RAPGEF1-206ENST00000438647 GRIN3BO60391 1043 aa32.36■■■□□ 2.77
RAPGEF1-206ENST00000438647 APAF1O14727 1248 aa32.35■■■□□ 2.77
RAPGEF1-206ENST00000438647 YY1P25490 414 aa32.35■■■□□ 2.77
RAPGEF1-206ENST00000438647 PIP4K2AP48426 406 aaPredicted RBP32.35■■■□□ 2.77
RAPGEF1-206ENST00000438647 DZIP3Q86Y13 1208 aaKnown RBP32.35■■■□□ 2.77
RAPGEF1-206ENST00000438647 SCN7AQ01118 1682 aa32.34■■■□□ 2.77
RAPGEF1-206ENST00000438647 PXDNLA1KZ92 1463 aa32.32■■■□□ 2.76
RAPGEF1-206ENST00000438647 NBPF26B4DH59 902 aa32.32■■■□□ 2.76
RAPGEF1-206ENST00000438647 CAMTA2O94983 1202 aa32.32■■■□□ 2.76
RAPGEF1-206ENST00000438647 YBX3P16989 372 aaKnown RBP eCLIP32.32■■■□□ 2.76
RAPGEF1-206ENST00000438647 NBPF10Q6P3W6 841 aaKnown RBP32.32■■■□□ 2.76
RAPGEF1-206ENST00000438647 NBPF15Q8N660 670 aa32.32■■■□□ 2.76
RAPGEF1-206ENST00000438647 CHL1O00533 1208 aa32.31■■■□□ 2.76
RAPGEF1-206ENST00000438647 CALD1Q05682 793 aaKnown RBP32.3■■■□□ 2.76
RAPGEF1-206ENST00000438647 ZNF652Q9Y2D9 606 aa32.3■■■□□ 2.76
RAPGEF1-206ENST00000438647 LAS1LQ9Y4W2 734 aaKnown RBP32.3■■■□□ 2.76
RAPGEF1-206ENST00000438647 SERPINB2P05120 415 aa32.29■■■□□ 2.76
RAPGEF1-206ENST00000438647 BICDL1Q6ZP65 573 aa32.29■■■□□ 2.76
RAPGEF1-206ENST00000438647 ERBB4Q15303 1308 aa32.28■■■□□ 2.76
RAPGEF1-206ENST00000438647 RGL2O15211 777 aa32.28■■■□□ 2.76
RAPGEF1-206ENST00000438647 TBC1D9BQ66K14 1250 aa32.28■■■□□ 2.76
RAPGEF1-206ENST00000438647 CLEC4GQ6UXB4 293 aa32.28■■■□□ 2.76
RAPGEF1-206ENST00000438647 CFAP44Q96MT7 982 aa32.27■■■□□ 2.76
RAPGEF1-206ENST00000438647 CARMIL3Q8ND23 1372 aa32.27■■■□□ 2.76
RAPGEF1-206ENST00000438647 A0A0G2JLW4 131 aa32.26■■■□□ 2.75
RAPGEF1-206ENST00000438647 SETDB2Q96T68 719 aa32.26■■■□□ 2.75
RAPGEF1-206ENST00000438647 BCORQ6W2J9 1755 aa32.26■■■□□ 2.75
RAPGEF1-206ENST00000438647 CHD4Q14839 1912 aa32.26■■■□□ 2.75
RAPGEF1-206ENST00000438647 DPEP1P16444 411 aa32.25■■■□□ 2.75
RAPGEF1-206ENST00000438647 KIAA1551Q9HCM1 1747 aa32.24■■■□□ 2.75
RAPGEF1-206ENST00000438647 NRXN2Q9P2S2 1712 aa32.24■■■□□ 2.75
RAPGEF1-206ENST00000438647 WWC3Q9ULE0 1092 aa32.24■■■□□ 2.75
RAPGEF1-206ENST00000438647 AFDNP55196 1824 aaKnown RBP32.23■■■□□ 2.75
RAPGEF1-206ENST00000438647 N4BP2Q86UW6 1770 aaPredicted RBP32.23■■■□□ 2.75
RAPGEF1-206ENST00000438647 MYL6BP14649 208 aa32.21■■■□□ 2.75
RAPGEF1-206ENST00000438647 EIF2S2P20042 333 aaKnown RBP32.21■■■□□ 2.75
RAPGEF1-206ENST00000438647 IFT57Q9NWB7 429 aa32.21■■■□□ 2.75
RAPGEF1-206ENST00000438647 GNAI1P63096 354 aa32.2■■■□□ 2.75
RAPGEF1-206ENST00000438647 KIF6Q6ZMV9 814 aa32.2■■■□□ 2.75
RAPGEF1-206ENST00000438647 NGEFQ8N5V2 710 aa32.2■■■□□ 2.75
RAPGEF1-206ENST00000438647 PIM2Q9P1W9 311 aa32.19■■■□□ 2.74
RAPGEF1-206ENST00000438647 BCS1LQ9Y276 419 aa32.19■■■□□ 2.74
RAPGEF1-206ENST00000438647 ERVV-1B6SEH8 477 aa32.18■■■□□ 2.74
RAPGEF1-206ENST00000438647 NPHP1O15259 732 aa32.18■■■□□ 2.74
RAPGEF1-206ENST00000438647 HOXB7P09629 217 aa32.18■■■□□ 2.74
RAPGEF1-206ENST00000438647 ZNF853P0CG23 659 aa32.17■■■□□ 2.74
RAPGEF1-206ENST00000438647 KCNA3P22001 575 aa32.17■■■□□ 2.74
Retrieved 100 of 20,778 RNA–protein pairs in 99.6 ms