RNA–Protein interactions for RNA: ENST00000437340.5

CPNE1-216, Transcript of copine 1, humanhuman

TSL 1 (best)

Gene CPNE1, Length 1,755 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-216ENST00000437340 CYP27B1O15528 508 aa31.94■■■□□ 2.7
CPNE1-216ENST00000437340 SHANK3Q9BYB0 1731 aa31.94■■■□□ 2.7
CPNE1-216ENST00000437340 UBTFL1P0CB47 393 aaPredicted RBP31.92■■■□□ 2.7
CPNE1-216ENST00000437340 HYPKQ9NX55 129 aa31.92■■■□□ 2.7
CPNE1-216ENST00000437340 LRP6O75581 1613 aa31.92■■■□□ 2.7
CPNE1-216ENST00000437340 PI4KAP2A4QPH2 592 aa31.91■■■□□ 2.7
CPNE1-216ENST00000437340 BEND3Q5T5X7 828 aa31.91■■■□□ 2.7
CPNE1-216ENST00000437340 PI4KAP1Q8N8J0 262 aa31.91■■■□□ 2.7
CPNE1-216ENST00000437340 SLIT2O94813 1529 aa31.91■■■□□ 2.7
CPNE1-216ENST00000437340 NFATC2IPQ8NCF5 419 aa31.9■■■□□ 2.7
CPNE1-216ENST00000437340 MFAP1P55081 439 aaKnown RBP31.89■■■□□ 2.7
CPNE1-216ENST00000437340 BECN1Q14457 450 aa31.89■■■□□ 2.7
CPNE1-216ENST00000437340 C22orf23Q9BZE7 217 aa31.89■■■□□ 2.7
CPNE1-216ENST00000437340 USP35Q9P2H5 1018 aa31.89■■■□□ 2.7
CPNE1-216ENST00000437340 ADCY9O60503 1353 aa31.89■■■□□ 2.7
CPNE1-216ENST00000437340 LRRFIP2Q9Y608 721 aaKnown RBP31.89■■■□□ 2.69
CPNE1-216ENST00000437340 SPATA31A6Q5VVP1 1343 aa31.89■■■□□ 2.69
CPNE1-216ENST00000437340 EIF5BO60841 1220 aaKnown RBP31.88■■■□□ 2.69
CPNE1-216ENST00000437340 IL2RBP14784 551 aa31.88■■■□□ 2.69
CPNE1-216ENST00000437340 DDX21Q9NR30 783 aaKnown RBP eCLIP31.88■■■□□ 2.69
CPNE1-216ENST00000437340 TTC22Q5TAA0 569 aa31.86■■■□□ 2.69
CPNE1-216ENST00000437340 KSR2Q6VAB6 950 aa31.86■■■□□ 2.69
CPNE1-216ENST00000437340 ANXA1P04083 346 aa31.86■■■□□ 2.69
CPNE1-216ENST00000437340 PCDH11XQ9BZA7 1347 aa31.84■■■□□ 2.69
CPNE1-216ENST00000437340 PCDH11YQ9BZA8 1340 aa31.84■■■□□ 2.69
CPNE1-216ENST00000437340 ALDH1L1O75891 902 aa31.84■■■□□ 2.69
CPNE1-216ENST00000437340 GSPT1P15170 499 aaKnown RBP31.84■■■□□ 2.69
CPNE1-216ENST00000437340 SLC4A3P48751 1232 aa31.84■■■□□ 2.69
CPNE1-216ENST00000437340 SLC39A6Q13433 755 aa31.84■■■□□ 2.69
CPNE1-216ENST00000437340 PNMA6EA0A0J9YXQ4 647 aa31.84■■■□□ 2.69
CPNE1-216ENST00000437340 PRAMEF22A3QJZ6 481 aa31.84■■■□□ 2.69
CPNE1-216ENST00000437340 C16orf71Q8IYS4 520 aaPredicted RBP31.84■■■□□ 2.69
CPNE1-216ENST00000437340 DISP2A7MBM2 1401 aa31.83■■■□□ 2.69
CPNE1-216ENST00000437340 CDC45O75419 566 aa31.83■■■□□ 2.69
CPNE1-216ENST00000437340 PROSER3Q2NL68 480 aa31.83■■■□□ 2.69
CPNE1-216ENST00000437340 SMARCA5O60264 1052 aaPredicted RBP31.82■■■□□ 2.68
CPNE1-216ENST00000437340 DDX58O95786 925 aaKnown RBP31.82■■■□□ 2.68
CPNE1-216ENST00000437340 TTC5Q8N0Z6 440 aa31.82■■■□□ 2.68
CPNE1-216ENST00000437340 ZCRB1Q8TBF4 217 aaKnown RBP31.82■■■□□ 2.68
CPNE1-216ENST00000437340 SSH3Q8TE77 659 aa31.82■■■□□ 2.68
CPNE1-216ENST00000437340 OSBPL3Q9H4L5 887 aa31.82■■■□□ 2.68
CPNE1-216ENST00000437340 IBTKQ9P2D0 1353 aaPredicted RBP31.82■■■□□ 2.68
CPNE1-216ENST00000437340 PDIA6Q15084 440 aa31.81■■■□□ 2.68
CPNE1-216ENST00000437340 C8orf37Q96NL8 207 aa31.81■■■□□ 2.68
CPNE1-216ENST00000437340 CABP4P57796 275 aa31.81■■■□□ 2.68
CPNE1-216ENST00000437340 TBC1D9Q6ZT07 1266 aa31.81■■■□□ 2.68
CPNE1-216ENST00000437340 MAP3K2Q9Y2U5 619 aa31.81■■■□□ 2.68
CPNE1-216ENST00000437340 RBM25P49756 843 aaKnown RBP31.8■■■□□ 2.68
CPNE1-216ENST00000437340 ZNF496Q96IT1 587 aaPredicted RBP31.8■■■□□ 2.68
CPNE1-216ENST00000437340 LRRCC1Q9C099 1032 aa31.8■■■□□ 2.68
CPNE1-216ENST00000437340 HDAC5Q9UQL6 1122 aa31.8■■■□□ 2.68
CPNE1-216ENST00000437340 APBB1O00213 710 aa31.79■■■□□ 2.68
CPNE1-216ENST00000437340 SNRPA1P09661 255 aaKnown RBP31.79■■■□□ 2.68
CPNE1-216ENST00000437340 EXOC6BQ9Y2D4 811 aa31.79■■■□□ 2.68
CPNE1-216ENST00000437340 POLA2Q14181 598 aa31.79■■■□□ 2.68
CPNE1-216ENST00000437340 OTUD7AQ8TE49 926 aaPredicted RBP31.79■■■□□ 2.68
CPNE1-216ENST00000437340 FMNL2Q96PY5 1086 aa31.79■■■□□ 2.68
CPNE1-216ENST00000437340 C5P01031 1676 aa31.77■■■□□ 2.68
CPNE1-216ENST00000437340 NKX1-1Q15270 411 aaPredicted RBP31.77■■■□□ 2.68
CPNE1-216ENST00000437340 SPATA31A1Q5TZJ5 1347 aa31.77■■■□□ 2.68
CPNE1-216ENST00000437340 TNKS1BP1Q9C0C2 1729 aaKnown RBP31.77■■■□□ 2.68
CPNE1-216ENST00000437340 NBPF7P0C2Y1 421 aaPredicted RBP31.76■■■□□ 2.68
CPNE1-216ENST00000437340 NGLY1Q96IV0 654 aa31.76■■■□□ 2.68
CPNE1-216ENST00000437340 BCL9LQ86UU0 1499 aa31.76■■■□□ 2.67
CPNE1-216ENST00000437340 ERVV-2B6SEH9 535 aa31.76■■■□□ 2.67
CPNE1-216ENST00000437340 RAB11FIP3O75154 756 aa31.75■■■□□ 2.67
CPNE1-216ENST00000437340 PPP1R42Q7Z4L9 355 aa31.75■■■□□ 2.67
CPNE1-216ENST00000437340 LINS1Q8NG48 757 aa31.75■■■□□ 2.67
CPNE1-216ENST00000437340 PDE1AP54750 535 aa31.73■■■□□ 2.67
CPNE1-216ENST00000437340 UNC5CLQ8IV45 518 aa31.73■■■□□ 2.67
CPNE1-216ENST00000437340 SPATA31A5Q5VU36 1347 aa31.73■■■□□ 2.67
CPNE1-216ENST00000437340 SPATA31A7Q8IWB4 1347 aa31.73■■■□□ 2.67
CPNE1-216ENST00000437340 SALL3Q9BXA9 1300 aa31.73■■■□□ 2.67
CPNE1-216ENST00000437340 MTX1Q13505 466 aa31.73■■■□□ 2.67
CPNE1-216ENST00000437340 FNBP4Q8N3X1 1017 aaPredicted RBP31.71■■■□□ 2.67
CPNE1-216ENST00000437340 TOGARAM1Q9Y4F4 1720 aa31.71■■■□□ 2.67
CPNE1-216ENST00000437340 C9orf78Q9NZ63 289 aaPredicted RBP31.71■■■□□ 2.67
CPNE1-216ENST00000437340 SDSP20132 328 aa31.7■■■□□ 2.67
CPNE1-216ENST00000437340 UTYO14607 1347 aa31.7■■■□□ 2.66
CPNE1-216ENST00000437340 SRGAP3O43295 1099 aa31.69■■■□□ 2.66
CPNE1-216ENST00000437340 NBR1Q14596 966 aa31.69■■■□□ 2.66
CPNE1-216ENST00000437340 DDX54Q8TDD1 881 aaKnown RBP31.69■■■□□ 2.66
CPNE1-216ENST00000437340 TBC1D2Q9BYX2 928 aa31.69■■■□□ 2.66
CPNE1-216ENST00000437340 THRAP3Q9Y2W1 955 aaKnown RBP31.69■■■□□ 2.66
CPNE1-216ENST00000437340 USP16Q9Y5T5 823 aa31.68■■■□□ 2.66
CPNE1-216ENST00000437340 HSP90AB4PQ58FF6 505 aa31.68■■■□□ 2.66
CPNE1-216ENST00000437340 MEX3CQ5U5Q3 659 aaKnown RBP31.68■■■□□ 2.66
CPNE1-216ENST00000437340 CASC1Q6TDU7 716 aa31.68■■■□□ 2.66
CPNE1-216ENST00000437340 LRP10Q7Z4F1 713 aa31.68■■■□□ 2.66
CPNE1-216ENST00000437340 RIC3Q7Z5B4 369 aa31.68■■■□□ 2.66
CPNE1-216ENST00000437340 BCL11AQ9H165 835 aa31.68■■■□□ 2.66
CPNE1-216ENST00000437340 CCDC9Q9Y3X0 531 aaKnown RBP31.68■■■□□ 2.66
CPNE1-216ENST00000437340 ERBB4Q15303 1308 aa31.67■■■□□ 2.66
CPNE1-216ENST00000437340 AIMP1Q12904 312 aaKnown RBP31.67■■■□□ 2.66
CPNE1-216ENST00000437340 STAP2Q9UGK3 403 aa31.67■■■□□ 2.66
CPNE1-216ENST00000437340 GLI3P10071 1580 aa31.67■■■□□ 2.66
CPNE1-216ENST00000437340 TNS2Q63HR2 1409 aa31.67■■■□□ 2.66
CPNE1-216ENST00000437340 MX1P20591 662 aa31.66■■■□□ 2.66
CPNE1-216ENST00000437340 AOX1Q06278 1338 aa31.66■■■□□ 2.66
CPNE1-216ENST00000437340 SURF6O75683 361 aaKnown RBP31.66■■■□□ 2.66
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms