RNA–Protein interactions for RNA: ENST00000430038.5

CPSF4-203, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 5

Gene CPSF4, Length 735 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-203ENST00000430038 VSIG10Q8N0Z9 540 aa22.97■■□□□ 1.27
CPSF4-203ENST00000430038 GAS2L2Q8NHY3 880 aa22.97■■□□□ 1.27
CPSF4-203ENST00000430038 CEMIPQ8WUJ3 1361 aa22.97■■□□□ 1.27
CPSF4-203ENST00000430038 ZNF790Q6PG37 636 aa22.96■■□□□ 1.27
CPSF4-203ENST00000430038 BCS1LQ9Y276 419 aa22.96■■□□□ 1.27
CPSF4-203ENST00000430038 CANXP27824 592 aaKnown RBP22.95■■□□□ 1.26
CPSF4-203ENST00000430038 COL15A1P39059 1388 aa22.95■■□□□ 1.26
CPSF4-203ENST00000430038 TEFQ10587 303 aa22.94■■□□□ 1.26
CPSF4-203ENST00000430038 CFAP53Q96M91 514 aa22.94■■□□□ 1.26
CPSF4-203ENST00000430038 NARFQ9UHQ1 456 aa22.94■■□□□ 1.26
CPSF4-203ENST00000430038 ZPR1O75312 459 aa22.93■■□□□ 1.26
CPSF4-203ENST00000430038 GIGYF1O75420 1035 aaPredicted RBP22.93■■□□□ 1.26
CPSF4-203ENST00000430038 U2AF1L5P0DN76 240 aaPredicted RBP22.93■■□□□ 1.26
CPSF4-203ENST00000430038 U2AF1Q01081 240 aaKnown RBP eCLIP22.93■■□□□ 1.26
CPSF4-203ENST00000430038 NFIXQ14938 502 aa22.93■■□□□ 1.26
CPSF4-203ENST00000430038 ARFGEF1Q9Y6D6 1849 aa22.93■■□□□ 1.26
CPSF4-203ENST00000430038 NRXN2Q9P2S2 1712 aa22.93■■□□□ 1.26
CPSF4-203ENST00000430038 HEG1Q9ULI3 1381 aa22.92■■□□□ 1.26
CPSF4-203ENST00000430038 CHRNA5P30532 468 aa22.92■■□□□ 1.26
CPSF4-203ENST00000430038 EIF5P55010 431 aaKnown RBP22.92■■□□□ 1.26
CPSF4-203ENST00000430038 ZNF526Q8TF50 670 aaPredicted RBP22.92■■□□□ 1.26
CPSF4-203ENST00000430038 DCTN1Q14203 1278 aa22.91■■□□□ 1.26
CPSF4-203ENST00000430038 MCM10Q7L590 875 aa22.91■■□□□ 1.26
CPSF4-203ENST00000430038 TTC5Q8N0Z6 440 aa22.91■■□□□ 1.26
CPSF4-203ENST00000430038 DLG5Q8TDM6 1919 aa22.9■■□□□ 1.26
CPSF4-203ENST00000430038 PRAMEF22A3QJZ6 481 aa22.9■■□□□ 1.26
CPSF4-203ENST00000430038 FCHSD2O94868 740 aa22.9■■□□□ 1.26
CPSF4-203ENST00000430038 A1BGP04217 495 aa22.89■■□□□ 1.25
CPSF4-203ENST00000430038 NUDCQ9Y266 331 aa22.89■■□□□ 1.25
CPSF4-203ENST00000430038 BTBD11A6QL63 1104 aa22.88■■□□□ 1.25
CPSF4-203ENST00000430038 ARHGAP27Q6ZUM4 889 aa22.88■■□□□ 1.25
CPSF4-203ENST00000430038 USP16Q9Y5T5 823 aa22.88■■□□□ 1.25
CPSF4-203ENST00000430038 STARD3NLO95772 234 aa22.87■■□□□ 1.25
CPSF4-203ENST00000430038 SBF1O95248 1867 aa22.86■■□□□ 1.25
CPSF4-203ENST00000430038 SENP3-EIF4A1A0A087X0R7 540 aa22.86■■□□□ 1.25
CPSF4-203ENST00000430038 PIP4K2AP48426 406 aaPredicted RBP22.86■■□□□ 1.25
CPSF4-203ENST00000430038 GPBP1L1Q9HC44 474 aaPredicted RBP22.86■■□□□ 1.25
CPSF4-203ENST00000430038 PIM2Q9P1W9 311 aa22.86■■□□□ 1.25
CPSF4-203ENST00000430038 TBC1D2BQ9UPU7 963 aa22.86■■□□□ 1.25
CPSF4-203ENST00000430038 CARMIL3Q8ND23 1372 aa22.86■■□□□ 1.25
CPSF4-203ENST00000430038 SERPINB2P05120 415 aa22.85■■□□□ 1.25
CPSF4-203ENST00000430038 FMNL2Q96PY5 1086 aa22.85■■□□□ 1.25
CPSF4-203ENST00000430038 ANKRD31Q8N7Z5 1873 aa22.85■■□□□ 1.25
CPSF4-203ENST00000430038 TBC1D9BQ66K14 1250 aa22.84■■□□□ 1.25
CPSF4-203ENST00000430038 BICDL1Q6ZP65 573 aa22.84■■□□□ 1.25
CPSF4-203ENST00000430038 CEP350Q5VT06 3117 aa22.84■■□□□ 1.25
CPSF4-203ENST00000430038 PLEKHF1Q96S99 279 aa22.83■■□□□ 1.25
CPSF4-203ENST00000430038 TEX13AQ9BXU3 409 aaPredicted RBP22.83■■□□□ 1.25
CPSF4-203ENST00000430038 SCN7AQ01118 1682 aa22.83■■□□□ 1.24
CPSF4-203ENST00000430038 DLEC1Q9Y238 1755 aa22.83■■□□□ 1.24
CPSF4-203ENST00000430038 KIF3CO14782 793 aa22.82■■□□□ 1.24
CPSF4-203ENST00000430038 DALRD3Q5D0E6 543 aaKnown RBP22.82■■□□□ 1.24
CPSF4-203ENST00000430038 MIS18AQ9NYP9 233 aa22.82■■□□□ 1.24
CPSF4-203ENST00000430038 ZNF330Q9Y3S2 320 aaPredicted RBP22.82■■□□□ 1.24
CPSF4-203ENST00000430038 IL6STP40189 918 aaPredicted RBP22.81■■□□□ 1.24
CPSF4-203ENST00000430038 CCDC24Q8N4L8 307 aa22.81■■□□□ 1.24
CPSF4-203ENST00000430038 CAMTA2O94983 1202 aa22.79■■□□□ 1.24
CPSF4-203ENST00000430038 PRELPP51888 382 aa22.79■■□□□ 1.24
CPSF4-203ENST00000430038 RTF1Q92541 710 aaKnown RBP22.79■■□□□ 1.24
CPSF4-203ENST00000430038 BCORQ6W2J9 1755 aa22.78■■□□□ 1.24
CPSF4-203ENST00000430038 A0A087WZG4 1122 aa22.78■■□□□ 1.24
CPSF4-203ENST00000430038 NBPF26B4DH59 902 aa22.78■■□□□ 1.24
CPSF4-203ENST00000430038 C9orf131Q5VYM1 1079 aa22.78■■□□□ 1.24
CPSF4-203ENST00000430038 NBPF10Q6P3W6 841 aaKnown RBP22.78■■□□□ 1.24
CPSF4-203ENST00000430038 NBPF15Q8N660 670 aa22.78■■□□□ 1.24
CPSF4-203ENST00000430038 CCDC88AQ3V6T2 1871 aa22.77■■□□□ 1.24
CPSF4-203ENST00000430038 HTATSF1O43719 755 aaKnown RBP22.77■■□□□ 1.24
CPSF4-203ENST00000430038 COL11A2P13942 1736 aaPredicted RBP22.77■■□□□ 1.23
CPSF4-203ENST00000430038 THUMPD2Q9BTF0 503 aaKnown RBP22.76■■□□□ 1.23
CPSF4-203ENST00000430038 KDM3BQ7LBC6 1761 aa22.76■■□□□ 1.23
CPSF4-203ENST00000430038 SNRPA1P09661 255 aaKnown RBP22.75■■□□□ 1.23
CPSF4-203ENST00000430038 TAF7Q15545 349 aaPredicted RBP22.75■■□□□ 1.23
CPSF4-203ENST00000430038 PRR5LQ6MZQ0 368 aa22.75■■□□□ 1.23
CPSF4-203ENST00000430038 RASSF7Q02833 373 aa22.74■■□□□ 1.23
CPSF4-203ENST00000430038 DZIP3Q86Y13 1208 aaKnown RBP22.74■■□□□ 1.23
CPSF4-203ENST00000430038 C2CD5Q86YS7 1000 aa22.74■■□□□ 1.23
CPSF4-203ENST00000430038 NMRK2Q9NPI5 230 aa22.74■■□□□ 1.23
CPSF4-203ENST00000430038 DDX10Q13206 875 aaKnown RBP22.72■■□□□ 1.23
CPSF4-203ENST00000430038 NFE2L2Q16236 605 aa22.71■■□□□ 1.23
CPSF4-203ENST00000430038 RNF181Q9P0P0 153 aa22.71■■□□□ 1.23
CPSF4-203ENST00000430038 CACNA1SQ13698 1873 aa22.71■■□□□ 1.23
CPSF4-203ENST00000430038 TTLL6Q8N841 843 aa22.7■■□□□ 1.22
CPSF4-203ENST00000430038 SLX4Q8IY92 1834 aa22.7■■□□□ 1.22
CPSF4-203ENST00000430038 LAMB4A4D0S4 1761 aa22.69■■□□□ 1.22
CPSF4-203ENST00000430038 H0YIN7 160 aa22.69■■□□□ 1.22
CPSF4-203ENST00000430038 BRIP1Q9BX63 1249 aa22.69■■□□□ 1.22
CPSF4-203ENST00000430038 SETDB2Q96T68 719 aa22.68■■□□□ 1.22
CPSF4-203ENST00000430038 NFKBIEO00221 500 aa22.67■■□□□ 1.22
CPSF4-203ENST00000430038 EIF4A1P60842 406 aaKnown RBP22.67■■□□□ 1.22
CPSF4-203ENST00000430038 HLFQ16534 295 aa22.67■■□□□ 1.22
CPSF4-203ENST00000430038 FER1L6Q2WGJ9 1857 aa22.66■■□□□ 1.22
CPSF4-203ENST00000430038 HSPA6P17066 643 aa22.66■■□□□ 1.22
CPSF4-203ENST00000430038 ZNF622Q969S3 477 aaKnown RBP eCLIP22.66■■□□□ 1.22
CPSF4-203ENST00000430038 ZNF219Q9P2Y4 722 aaPredicted RBP22.66■■□□□ 1.22
CPSF4-203ENST00000430038 RALBP1Q15311 655 aa22.65■■□□□ 1.22
CPSF4-203ENST00000430038 NUP98P52948 1817 aa22.65■■□□□ 1.22
CPSF4-203ENST00000430038 PDE6BP35913 854 aa22.64■■□□□ 1.21
CPSF4-203ENST00000430038 CLEC4GQ6UXB4 293 aa22.64■■□□□ 1.21
CPSF4-203ENST00000430038 CNBD1Q8NA66 436 aa22.64■■□□□ 1.21
CPSF4-203ENST00000430038 C21orf2O43822 256 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 126.1 ms