RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CANXP27824 592 aaKnown RBP19.52■□□□□ 0.72
SDC1-204ENST00000429035 CHRNA5P30532 468 aa19.52■□□□□ 0.72
SDC1-204ENST00000429035 TEFQ10587 303 aa19.52■□□□□ 0.72
SDC1-204ENST00000429035 GAS2L2Q8NHY3 880 aa19.52■□□□□ 0.72
SDC1-204ENST00000429035 PIM2Q9P1W9 311 aa19.52■□□□□ 0.72
SDC1-204ENST00000429035 ZNF330Q9Y3S2 320 aaPredicted RBP19.51■□□□□ 0.71
SDC1-204ENST00000429035 SCN7AQ01118 1682 aa19.5■□□□□ 0.71
SDC1-204ENST00000429035 DALRD3Q5D0E6 543 aaKnown RBP19.5■□□□□ 0.71
SDC1-204ENST00000429035 CFAP53Q96M91 514 aa19.5■□□□□ 0.71
SDC1-204ENST00000429035 NRXN2Q9P2S2 1712 aa19.5■□□□□ 0.71
SDC1-204ENST00000429035 DLEC1Q9Y238 1755 aa19.49■□□□□ 0.71
SDC1-204ENST00000429035 GNAT3A8MTJ3 354 aa19.49■□□□□ 0.71
SDC1-204ENST00000429035 KCNA3P22001 575 aa19.49■□□□□ 0.71
SDC1-204ENST00000429035 NARFQ9UHQ1 456 aa19.49■□□□□ 0.71
SDC1-204ENST00000429035 KIF3CO14782 793 aa19.48■□□□□ 0.71
SDC1-204ENST00000429035 NFIXQ14938 502 aa19.48■□□□□ 0.71
SDC1-204ENST00000429035 C9orf131Q5VYM1 1079 aa19.48■□□□□ 0.71
SDC1-204ENST00000429035 VSIG10Q8N0Z9 540 aa19.48■□□□□ 0.71
SDC1-204ENST00000429035 HSPA6P17066 643 aa19.47■□□□□ 0.71
SDC1-204ENST00000429035 TM4SF1P30408 202 aa19.47■□□□□ 0.71
SDC1-204ENST00000429035 PRKAR2BP31323 418 aa19.47■□□□□ 0.71
SDC1-204ENST00000429035 BICDL1Q6ZP65 573 aa19.47■□□□□ 0.71
SDC1-204ENST00000429035 SBF1O95248 1867 aa19.47■□□□□ 0.71
SDC1-204ENST00000429035 HEG1Q9ULI3 1381 aa19.46■□□□□ 0.71
SDC1-204ENST00000429035 STARD3NLO95772 234 aa19.46■□□□□ 0.71
SDC1-204ENST00000429035 RNF181Q9P0P0 153 aa19.46■□□□□ 0.71
SDC1-204ENST00000429035 IL17REQ8NFR9 667 aa19.45■□□□□ 0.7
SDC1-204ENST00000429035 ZNF496Q96IT1 587 aaPredicted RBP19.45■□□□□ 0.7
SDC1-204ENST00000429035 CACNA1SQ13698 1873 aa19.45■□□□□ 0.7
SDC1-204ENST00000429035 SERPINB2P05120 415 aa19.44■□□□□ 0.7
SDC1-204ENST00000429035 ZNF790Q6PG37 636 aa19.44■□□□□ 0.7
SDC1-204ENST00000429035 BCL2L12Q9HB09 334 aa19.44■□□□□ 0.7
SDC1-204ENST00000429035 NMRK2Q9NPI5 230 aa19.44■□□□□ 0.7
SDC1-204ENST00000429035 CARMIL3Q8ND23 1372 aa19.44■□□□□ 0.7
SDC1-204ENST00000429035 CCDC88AQ3V6T2 1871 aa19.43■□□□□ 0.7
SDC1-204ENST00000429035 ANKRD31Q8N7Z5 1873 aa19.43■□□□□ 0.7
SDC1-204ENST00000429035 BCORQ6W2J9 1755 aa19.43■□□□□ 0.7
SDC1-204ENST00000429035 RASSF7Q02833 373 aa19.43■□□□□ 0.7
SDC1-204ENST00000429035 NPM2Q86SE8 214 aaKnown RBP19.43■□□□□ 0.7
SDC1-204ENST00000429035 NUDCQ9Y266 331 aa19.43■□□□□ 0.7
SDC1-204ENST00000429035 TIAM2Q8IVF5 1701 aa19.42■□□□□ 0.7
SDC1-204ENST00000429035 A0A087WZG4 1122 aa19.42■□□□□ 0.7
SDC1-204ENST00000429035 U2AF1L5P0DN76 240 aaPredicted RBP19.42■□□□□ 0.7
SDC1-204ENST00000429035 U2AF1Q01081 240 aaKnown RBP eCLIP19.42■□□□□ 0.7
SDC1-204ENST00000429035 FMNL2Q96PY5 1086 aa19.42■□□□□ 0.7
SDC1-204ENST00000429035 RSPH6AQ9H0K4 717 aa19.42■□□□□ 0.7
SDC1-204ENST00000429035 TNRC6CQ9HCJ0 1690 aaKnown RBP19.42■□□□□ 0.7
SDC1-204ENST00000429035 COL11A2P13942 1736 aaPredicted RBP19.42■□□□□ 0.7
SDC1-204ENST00000429035 CEP350Q5VT06 3117 aa19.41■□□□□ 0.7
SDC1-204ENST00000429035 BTBD11A6QL63 1104 aa19.41■□□□□ 0.7
SDC1-204ENST00000429035 C16orf71Q8IYS4 520 aaPredicted RBP19.41■□□□□ 0.7
SDC1-204ENST00000429035 PHACTR3Q96KR7 559 aa19.41■□□□□ 0.7
SDC1-204ENST00000429035 NPHP1O15259 732 aa19.4■□□□□ 0.7
SDC1-204ENST00000429035 EIF5P55010 431 aaKnown RBP19.4■□□□□ 0.7
SDC1-204ENST00000429035 C2CD5Q86YS7 1000 aa19.4■□□□□ 0.7
SDC1-204ENST00000429035 TBC1D2BQ9UPU7 963 aa19.4■□□□□ 0.7
SDC1-204ENST00000429035 KCNQ3O43525 872 aa19.39■□□□□ 0.69
SDC1-204ENST00000429035 PPP2R1AP30153 589 aa19.39■□□□□ 0.69
SDC1-204ENST00000429035 TBC1D9BQ66K14 1250 aa19.39■□□□□ 0.69
SDC1-204ENST00000429035 RTF1Q92541 710 aaKnown RBP19.39■□□□□ 0.69
SDC1-204ENST00000429035 TEX13AQ9BXU3 409 aaPredicted RBP19.39■□□□□ 0.69
SDC1-204ENST00000429035 CEMIPQ8WUJ3 1361 aa19.39■□□□□ 0.69
SDC1-204ENST00000429035 TOMM70O94826 608 aa19.38■□□□□ 0.69
SDC1-204ENST00000429035 A1BGP04217 495 aa19.38■□□□□ 0.69
SDC1-204ENST00000429035 CCDC24Q8N4L8 307 aa19.38■□□□□ 0.69
SDC1-204ENST00000429035 KDM2BQ8NHM5 1336 aa19.38■□□□□ 0.69
SDC1-204ENST00000429035 H0YIN7 160 aa19.37■□□□□ 0.69
SDC1-204ENST00000429035 PIP4K2AP48426 406 aaPredicted RBP19.37■□□□□ 0.69
SDC1-204ENST00000429035 MCM10Q7L590 875 aa19.37■□□□□ 0.69
SDC1-204ENST00000429035 DLG5Q8TDM6 1919 aa19.37■□□□□ 0.69
SDC1-204ENST00000429035 WDR90Q96KV7 1748 aa19.37■□□□□ 0.69
SDC1-204ENST00000429035 IL6STP40189 918 aaPredicted RBP19.36■□□□□ 0.69
SDC1-204ENST00000429035 TTLL6Q8N841 843 aa19.36■□□□□ 0.69
SDC1-204ENST00000429035 ZNF622Q969S3 477 aaKnown RBP eCLIP19.36■□□□□ 0.69
SDC1-204ENST00000429035 ZNF219Q9P2Y4 722 aaPredicted RBP19.36■□□□□ 0.69
SDC1-204ENST00000429035 LAMB4A4D0S4 1761 aa19.35■□□□□ 0.69
SDC1-204ENST00000429035 DCTN1Q14203 1278 aa19.35■□□□□ 0.69
SDC1-204ENST00000429035 APLP1P51693 650 aa19.34■□□□□ 0.69
SDC1-204ENST00000429035 DZIP3Q86Y13 1208 aaKnown RBP19.34■□□□□ 0.69
SDC1-204ENST00000429035 PRAMEF22A3QJZ6 481 aa19.33■□□□□ 0.68
SDC1-204ENST00000429035 PRR5LQ6MZQ0 368 aa19.33■□□□□ 0.68
SDC1-204ENST00000429035 CNBD1Q8NA66 436 aa19.33■□□□□ 0.68
SDC1-204ENST00000429035 RRAGCQ9HB90 399 aa19.33■□□□□ 0.68
SDC1-204ENST00000429035 SETDB2Q96T68 719 aa19.32■□□□□ 0.68
SDC1-204ENST00000429035 USP16Q9Y5T5 823 aa19.32■□□□□ 0.68
SDC1-204ENST00000429035 ARFGEF2Q9Y6D5 1785 aa19.32■□□□□ 0.68
SDC1-204ENST00000429035 CAMTA2O94983 1202 aa19.31■□□□□ 0.68
SDC1-204ENST00000429035 NEFMP07197 916 aa19.31■□□□□ 0.68
SDC1-204ENST00000429035 LMNB1P20700 586 aa19.31■□□□□ 0.68
SDC1-204ENST00000429035 PDE6BP35913 854 aa19.31■□□□□ 0.68
SDC1-204ENST00000429035 ST5P78524 1137 aa19.31■□□□□ 0.68
SDC1-204ENST00000429035 RBM46Q8TBY0 533 aaKnown RBP19.31■□□□□ 0.68
SDC1-204ENST00000429035 FER1L6Q2WGJ9 1857 aa19.31■□□□□ 0.68
SDC1-204ENST00000429035 DICER1Q9UPY3 1922 aaKnown RBP19.3■□□□□ 0.68
SDC1-204ENST00000429035 SNRPA1P09661 255 aaKnown RBP19.29■□□□□ 0.68
SDC1-204ENST00000429035 BRIP1Q9BX63 1249 aa19.29■□□□□ 0.68
SDC1-204ENST00000429035 SLX4Q8IY92 1834 aa19.29■□□□□ 0.68
SDC1-204ENST00000429035 KDM3BQ7LBC6 1761 aa19.29■□□□□ 0.68
SDC1-204ENST00000429035 ZC3H4Q9UPT8 1303 aaKnown RBP19.28■□□□□ 0.68
SDC1-204ENST00000429035 NFKBIEO00221 500 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms