RNA–Protein interactions for RNA: ENST00000427455.1

HERPUD2-205, Transcript of HERPUD family member 2, humanhuman

TSL 3

Gene HERPUD2, Length 672 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2-205ENST00000427455 SMIM5Q71RC9 77 aa32.9■■■□□ 2.86
HERPUD2-205ENST00000427455 LAMB4A4D0S4 1761 aa32.9■■■□□ 2.86
HERPUD2-205ENST00000427455 COL24A1Q17RW2 1714 aa32.89■■■□□ 2.86
HERPUD2-205ENST00000427455 C4AP0C0L4 1744 aa32.88■■■□□ 2.85
HERPUD2-205ENST00000427455 CALD1Q05682 793 aaKnown RBP32.88■■■□□ 2.85
HERPUD2-205ENST00000427455 NCBP3Q53F19 620 aaKnown RBP32.88■■■□□ 2.85
HERPUD2-205ENST00000427455 ATF5Q9Y2D1 282 aaPredicted RBP32.88■■■□□ 2.85
HERPUD2-205ENST00000427455 EIF4A1P60842 406 aaKnown RBP32.87■■■□□ 2.85
HERPUD2-205ENST00000427455 CCDC27Q2M243 656 aa32.87■■■□□ 2.85
HERPUD2-205ENST00000427455 TRAPPC3LQ5T215 181 aa32.87■■■□□ 2.85
HERPUD2-205ENST00000427455 ZBTB1Q9Y2K1 713 aa32.87■■■□□ 2.85
HERPUD2-205ENST00000427455 SOS1Q07889 1333 aaPredicted RBP32.85■■■□□ 2.85
HERPUD2-205ENST00000427455 CHL1O00533 1208 aa32.85■■■□□ 2.85
HERPUD2-205ENST00000427455 PTGER2P43116 358 aa32.84■■■□□ 2.85
HERPUD2-205ENST00000427455 PRAMEF22A3QJZ6 481 aa32.83■■■□□ 2.85
HERPUD2-205ENST00000427455 CFAP44Q96MT7 982 aa32.83■■■□□ 2.85
HERPUD2-205ENST00000427455 LAS1LQ9Y4W2 734 aaKnown RBP32.83■■■□□ 2.85
HERPUD2-205ENST00000427455 SENP3-EIF4A1A0A087X0R7 540 aa32.82■■■□□ 2.84
HERPUD2-205ENST00000427455 MIER1Q8N108 512 aa32.82■■■□□ 2.84
HERPUD2-205ENST00000427455 ARHGEF1Q92888 912 aaKnown RBP32.82■■■□□ 2.84
HERPUD2-205ENST00000427455 SGIP1Q9BQI5 828 aa32.82■■■□□ 2.84
HERPUD2-205ENST00000427455 USP16Q9Y5T5 823 aa32.82■■■□□ 2.84
HERPUD2-205ENST00000427455 COL15A1P39059 1388 aa32.82■■■□□ 2.84
HERPUD2-205ENST00000427455 GIGYF1O75420 1035 aaPredicted RBP32.81■■■□□ 2.84
HERPUD2-205ENST00000427455 IFT57Q9NWB7 429 aa32.81■■■□□ 2.84
HERPUD2-205ENST00000427455 CANXP27824 592 aaKnown RBP32.8■■■□□ 2.84
HERPUD2-205ENST00000427455 RFC4P35249 363 aa32.8■■■□□ 2.84
HERPUD2-205ENST00000427455 WWC1Q8IX03 1113 aa32.8■■■□□ 2.84
HERPUD2-205ENST00000427455 ZNF853P0CG23 659 aa32.78■■■□□ 2.84
HERPUD2-205ENST00000427455 GNAI1P63096 354 aa32.78■■■□□ 2.84
HERPUD2-205ENST00000427455 MSL1Q68DK7 614 aa32.78■■■□□ 2.84
HERPUD2-205ENST00000427455 NGEFQ8N5V2 710 aa32.78■■■□□ 2.84
HERPUD2-205ENST00000427455 A1BGP04217 495 aa32.77■■■□□ 2.84
HERPUD2-205ENST00000427455 POLD1P28340 1107 aa32.77■■■□□ 2.84
HERPUD2-205ENST00000427455 PPP1R1BQ9UD71 204 aaPredicted RBP32.77■■■□□ 2.84
HERPUD2-205ENST00000427455 IL6STP40189 918 aaPredicted RBP32.76■■■□□ 2.83
HERPUD2-205ENST00000427455 USP42Q9H9J4 1324 aaKnown RBP32.76■■■□□ 2.83
HERPUD2-205ENST00000427455 EIF5P55010 431 aaKnown RBP32.75■■■□□ 2.83
HERPUD2-205ENST00000427455 MBIPQ9NS73 344 aa32.75■■■□□ 2.83
HERPUD2-205ENST00000427455 SALL2Q9Y467 1007 aaPredicted RBP32.73■■■□□ 2.83
HERPUD2-205ENST00000427455 IL16Q14005 1332 aa32.73■■■□□ 2.83
HERPUD2-205ENST00000427455 A0A087WZG4 1122 aa32.72■■■□□ 2.83
HERPUD2-205ENST00000427455 GYS1P13807 737 aa32.71■■■□□ 2.83
HERPUD2-205ENST00000427455 SRP68Q9UHB9 627 aaKnown RBP32.71■■■□□ 2.83
HERPUD2-205ENST00000427455 ZNF330Q9Y3S2 320 aaPredicted RBP32.71■■■□□ 2.83
HERPUD2-205ENST00000427455 SCN7AQ01118 1682 aa32.7■■■□□ 2.83
HERPUD2-205ENST00000427455 ZPR1O75312 459 aa32.7■■■□□ 2.83
HERPUD2-205ENST00000427455 NPM2Q86SE8 214 aaKnown RBP32.7■■■□□ 2.83
HERPUD2-205ENST00000427455 ARXQ96QS3 562 aa32.7■■■□□ 2.83
HERPUD2-205ENST00000427455 PIP4K2AP48426 406 aaPredicted RBP32.69■■■□□ 2.82
HERPUD2-205ENST00000427455 NLGN1Q8N2Q7 840 aa32.69■■■□□ 2.82
HERPUD2-205ENST00000427455 NARFQ9UHQ1 456 aa32.69■■■□□ 2.82
HERPUD2-205ENST00000427455 NBPF26B4DH59 902 aa32.68■■■□□ 2.82
HERPUD2-205ENST00000427455 KRT24Q2M2I5 525 aa32.68■■■□□ 2.82
HERPUD2-205ENST00000427455 NBPF10Q6P3W6 841 aaKnown RBP32.68■■■□□ 2.82
HERPUD2-205ENST00000427455 WDR63Q8IWG1 891 aa32.68■■■□□ 2.82
HERPUD2-205ENST00000427455 NBPF15Q8N660 670 aa32.68■■■□□ 2.82
HERPUD2-205ENST00000427455 ERBB4Q15303 1308 aa32.68■■■□□ 2.82
HERPUD2-205ENST00000427455 HOXB7P09629 217 aa32.67■■■□□ 2.82
HERPUD2-205ENST00000427455 USPL1Q5W0Q7 1092 aa32.66■■■□□ 2.82
HERPUD2-205ENST00000427455 BCORQ6W2J9 1755 aa32.65■■■□□ 2.82
HERPUD2-205ENST00000427455 EIF2S2P20042 333 aaKnown RBP32.63■■■□□ 2.81
HERPUD2-205ENST00000427455 FKBP8Q14318 412 aa32.63■■■□□ 2.81
HERPUD2-205ENST00000427455 MMP10P09238 476 aa32.62■■■□□ 2.81
HERPUD2-205ENST00000427455 TSR2Q969E8 191 aaKnown RBP32.62■■■□□ 2.81
HERPUD2-205ENST00000427455 TBC1D2BQ9UPU7 963 aa32.62■■■□□ 2.81
HERPUD2-205ENST00000427455 DUSP27Q5VZP5 1158 aa32.61■■■□□ 2.81
HERPUD2-205ENST00000427455 DZIP3Q86Y13 1208 aaKnown RBP32.61■■■□□ 2.81
HERPUD2-205ENST00000427455 ZNF521Q96K83 1311 aa32.6■■■□□ 2.81
HERPUD2-205ENST00000427455 FHDC1Q9C0D6 1143 aaPredicted RBP32.59■■■□□ 2.81
HERPUD2-205ENST00000427455 BCL2L12Q9HB09 334 aa32.59■■■□□ 2.81
HERPUD2-205ENST00000427455 MYL6BP14649 208 aa32.58■■■□□ 2.81
HERPUD2-205ENST00000427455 HDGFL1Q5TGJ6 251 aa32.58■■■□□ 2.81
HERPUD2-205ENST00000427455 FANCIQ9NVI1 1328 aa32.57■■■□□ 2.8
HERPUD2-205ENST00000427455 CAMTA2O94983 1202 aa32.57■■■□□ 2.8
HERPUD2-205ENST00000427455 PDIA6Q15084 440 aa32.56■■■□□ 2.8
HERPUD2-205ENST00000427455 NECTIN2Q92692 538 aa32.56■■■□□ 2.8
HERPUD2-205ENST00000427455 C8orf58Q8NAV2 365 aa32.55■■■□□ 2.8
HERPUD2-205ENST00000427455 PARP3Q9Y6F1 533 aa32.55■■■□□ 2.8
HERPUD2-205ENST00000427455 KLHL34Q8N239 644 aa32.54■■■□□ 2.8
HERPUD2-205ENST00000427455 MYH16Q9H6N6 1097 aa32.54■■■□□ 2.8
HERPUD2-205ENST00000427455 RGL2O15211 777 aa32.53■■■□□ 2.8
HERPUD2-205ENST00000427455 TM4SF1P30408 202 aa32.53■■■□□ 2.8
HERPUD2-205ENST00000427455 LRP10Q7Z4F1 713 aa32.53■■■□□ 2.8
HERPUD2-205ENST00000427455 SYT17Q9BSW7 474 aa32.53■■■□□ 2.8
HERPUD2-205ENST00000427455 ELL2O00472 640 aaPredicted RBP32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 DDR1Q08345 913 aa32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 NFIXQ14938 502 aa32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 PROSER3Q2NL68 480 aa32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 SPINK5Q9NQ38 1064 aaPredicted RBP32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 DDX21Q9NR30 783 aaKnown RBP eCLIP32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 CHPF2Q9P2E5 772 aa32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 ZNF652Q9Y2D9 606 aa32.52■■■□□ 2.8
HERPUD2-205ENST00000427455 KIF6Q6ZMV9 814 aa32.51■■■□□ 2.79
HERPUD2-205ENST00000427455 CHMP4AQ9BY43 222 aa32.51■■■□□ 2.79
HERPUD2-205ENST00000427455 POLRMTO00411 1230 aaKnown RBP32.5■■■□□ 2.79
HERPUD2-205ENST00000427455 ANXA1P04083 346 aa32.5■■■□□ 2.79
HERPUD2-205ENST00000427455 GOLGA2Q08379 1002 aa32.5■■■□□ 2.79
HERPUD2-205ENST00000427455 CLEC4GQ6UXB4 293 aa32.5■■■□□ 2.79
HERPUD2-205ENST00000427455 DBF4Q9UBU7 674 aaPredicted RBP32.5■■■□□ 2.79
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms