RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 KCNA6P17658 529 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 HSPA4P34932 840 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 PPP1R42Q7Z4L9 355 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 NGDNQ8NEJ9 315 aaKnown RBP12.04□□□□□ -0.48
SS18-203ENST00000415083 LTV1Q96GA3 475 aaPredicted RBP12.04□□□□□ -0.48
SS18-203ENST00000415083 TTC14Q96N46 770 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 LARP6Q9BRS8 491 aaKnown RBP12.04□□□□□ -0.48
SS18-203ENST00000415083 ANO2Q9NQ90 1003 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 FER1L4A9Z1Z3 1794 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 TAF7Q15545 349 aaPredicted RBP12.04□□□□□ -0.48
SS18-203ENST00000415083 NBPF6Q5VWK0 638 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 CASC1Q6TDU7 716 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 LRSAM1Q6UWE0 723 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 NBPF4Q96M43 638 aa12.04□□□□□ -0.48
SS18-203ENST00000415083 LSG1Q9H089 658 aaKnown RBP12.04□□□□□ -0.48
SS18-203ENST00000415083 ESF1Q9H501 851 aaKnown RBP12.04□□□□□ -0.48
SS18-203ENST00000415083 GOLGA6L22H0YM25 854 aa12.03□□□□□ -0.48
SS18-203ENST00000415083 GNAI3P08754 354 aa12.03□□□□□ -0.48
SS18-203ENST00000415083 BEND3Q5T5X7 828 aa12.03□□□□□ -0.48
SS18-203ENST00000415083 PHRF1Q9P1Y6 1649 aaKnown RBP12.03□□□□□ -0.48
SS18-203ENST00000415083 LARGE1O95461 756 aa12.03□□□□□ -0.48
SS18-203ENST00000415083 EIF4A1P60842 406 aaKnown RBP12.03□□□□□ -0.48
SS18-203ENST00000415083 ST3GAL1Q11201 340 aa12.03□□□□□ -0.48
SS18-203ENST00000415083 ZSCAN30Q86W11 494 aa12.03□□□□□ -0.48
SS18-203ENST00000415083 STK31Q9BXU1 1019 aa12.03□□□□□ -0.48
SS18-203ENST00000415083 TRIM6-TRIM34B2RNG4 842 aa12.02□□□□□ -0.48
SS18-203ENST00000415083 CPA1P15085 419 aa12.02□□□□□ -0.48
SS18-203ENST00000415083 ANKARQ7Z5J8 1434 aa12.02□□□□□ -0.48
SS18-203ENST00000415083 CHD2O14647 1828 aaKnown RBP12.02□□□□□ -0.48
SS18-203ENST00000415083 ANAPC15P60006 121 aa12.02□□□□□ -0.49
SS18-203ENST00000415083 RBM33Q96EV2 1170 aaKnown RBP12.02□□□□□ -0.49
SS18-203ENST00000415083 SNX14Q9Y5W7 946 aa12.02□□□□□ -0.49
SS18-203ENST00000415083 PRAMEF22A3QJZ6 481 aa12.02□□□□□ -0.49
SS18-203ENST00000415083 FOXD4L6Q3SYB3 417 aaPredicted RBP12.02□□□□□ -0.49
SS18-203ENST00000415083 FOXD4L3Q6VB84 417 aaPredicted RBP12.02□□□□□ -0.49
SS18-203ENST00000415083 CHPF2Q9P2E5 772 aa12.02□□□□□ -0.49
SS18-203ENST00000415083 RHPN1Q8TCX5 695 aa12.01□□□□□ -0.49
SS18-203ENST00000415083 AOX1Q06278 1338 aa12.01□□□□□ -0.49
SS18-203ENST00000415083 SGSM2O43147 1006 aa12.01□□□□□ -0.49
SS18-203ENST00000415083 PROSER3Q2NL68 480 aa12.01□□□□□ -0.49
SS18-203ENST00000415083 RUFY3Q7L099 469 aa12.01□□□□□ -0.49
SS18-203ENST00000415083 TRIM44Q96DX7 344 aaPredicted RBP12.01□□□□□ -0.49
SS18-203ENST00000415083 INTS4Q96HW7 963 aaKnown RBP12.01□□□□□ -0.49
SS18-203ENST00000415083 HDGFL1Q5TGJ6 251 aa12.01□□□□□ -0.49
SS18-203ENST00000415083 RGPD5Q99666 1765 aa12□□□□□ -0.49
SS18-203ENST00000415083 NOL7Q9UMY1 257 aaKnown RBP12□□□□□ -0.49
SS18-203ENST00000415083 RAD50Q92878 1312 aa12□□□□□ -0.49
SS18-203ENST00000415083 OFD1O75665 1012 aa12□□□□□ -0.49
SS18-203ENST00000415083 UBTFL1P0CB47 393 aaPredicted RBP12□□□□□ -0.49
SS18-203ENST00000415083 SRCIN1Q9C0H9 1055 aa12□□□□□ -0.49
SS18-203ENST00000415083 C5P01031 1676 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 PTH1RQ03431 593 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 USP48Q86UV5 1035 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 KAZALD1Q96I82 304 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 USP42Q9H9J4 1324 aaKnown RBP11.99□□□□□ -0.49
SS18-203ENST00000415083 ADAMTS7Q9UKP4 1686 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 HSP90AA2PQ14568 343 aaPredicted RBP11.99□□□□□ -0.49
SS18-203ENST00000415083 ADCK5Q3MIX3 580 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 PLPPR3Q6T4P5 718 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 VSIG10Q8N0Z9 540 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 ABTB2Q8N961 1025 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 LRRC59Q96AG4 307 aaKnown RBP11.99□□□□□ -0.49
SS18-203ENST00000415083 CAMTA1Q9Y6Y1 1673 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 PI4KAP2A4QPH2 592 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 SURF6O75683 361 aaKnown RBP11.99□□□□□ -0.49
SS18-203ENST00000415083 PI4KAP1Q8N8J0 262 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 BABAM1Q9NWV8 329 aa11.99□□□□□ -0.49
SS18-203ENST00000415083 EIF2S2P20042 333 aaKnown RBP11.98□□□□□ -0.49
SS18-203ENST00000415083 AK2P54819 239 aa11.98□□□□□ -0.49
SS18-203ENST00000415083 KIAA1211Q6ZU35 1233 aa11.98□□□□□ -0.49
SS18-203ENST00000415083 RNF214Q8ND24 703 aa11.98□□□□□ -0.49
SS18-203ENST00000415083 SPG7Q9UQ90 795 aa11.98□□□□□ -0.49
SS18-203ENST00000415083 HEG1Q9ULI3 1381 aa11.98□□□□□ -0.49
SS18-203ENST00000415083 NCAPD2Q15021 1401 aa11.98□□□□□ -0.49
SS18-203ENST00000415083 XPCQ01831 940 aaPredicted RBP11.98□□□□□ -0.49
SS18-203ENST00000415083 SRGAP3O43295 1099 aa11.98□□□□□ -0.49
SS18-203ENST00000415083 ZNF500O60304 480 aaPredicted RBP11.98□□□□□ -0.49
SS18-203ENST00000415083 TAF6LQ9Y6J9 622 aa11.97□□□□□ -0.49
SS18-203ENST00000415083 PA2G4Q9UQ80 394 aaKnown RBP11.97□□□□□ -0.49
SS18-203ENST00000415083 CNPY2Q9Y2B0 182 aa11.97□□□□□ -0.49
SS18-203ENST00000415083 MCM2P49736 904 aa11.96□□□□□ -0.49
SS18-203ENST00000415083 IP6K1Q92551 441 aa11.96□□□□□ -0.49
SS18-203ENST00000415083 EID1Q9Y6B2 187 aa11.96□□□□□ -0.49
SS18-203ENST00000415083 AP5Z1O43299 807 aa11.96□□□□□ -0.49
SS18-203ENST00000415083 HS1BP3Q53T59 392 aa11.96□□□□□ -0.49
SS18-203ENST00000415083 TMEM87AQ8NBN3 555 aa11.96□□□□□ -0.5
SS18-203ENST00000415083 RAB11FIP3O75154 756 aa11.95□□□□□ -0.5
SS18-203ENST00000415083 CWC27Q6UX04 472 aaKnown RBP11.95□□□□□ -0.5
SS18-203ENST00000415083 DNAAF4Q8WXU2 420 aa11.95□□□□□ -0.5
SS18-203ENST00000415083 HYPKQ9NX55 129 aa11.95□□□□□ -0.5
SS18-203ENST00000415083 MPRIPQ6WCQ1 1025 aa11.95□□□□□ -0.5
SS18-203ENST00000415083 DDX54Q8TDD1 881 aaKnown RBP11.95□□□□□ -0.5
SS18-203ENST00000415083 KCNB2Q92953 911 aa11.95□□□□□ -0.5
SS18-203ENST00000415083 ZKSCAN5Q9Y2L8 839 aa11.95□□□□□ -0.5
SS18-203ENST00000415083 MTX1Q13505 466 aa11.95□□□□□ -0.5
SS18-203ENST00000415083 SYT1P21579 422 aa11.94□□□□□ -0.5
SS18-203ENST00000415083 CWF19L2Q2TBE0 894 aaKnown RBP11.94□□□□□ -0.5
SS18-203ENST00000415083 FUCA2Q9BTY2 467 aa11.94□□□□□ -0.5
SS18-203ENST00000415083 TRPM3Q9HCF6 1732 aaPredicted RBP11.94□□□□□ -0.5
SS18-203ENST00000415083 PDIA6Q15084 440 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms