RNA–Protein interactions for RNA: ENST00000413354.5

MCF2L-211, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 5

Gene MCF2L, Length 952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-211ENST00000413354 ZPR1O75312 459 aa20.76■□□□□ 0.91
MCF2L-211ENST00000413354 YY1P25490 414 aa20.76■□□□□ 0.91
MCF2L-211ENST00000413354 DCTN1Q14203 1278 aa20.75■□□□□ 0.91
MCF2L-211ENST00000413354 PELP1Q8IZL8 1130 aaKnown RBP20.75■□□□□ 0.91
MCF2L-211ENST00000413354 PRKRIP1Q9H875 184 aaPredicted RBP20.75■□□□□ 0.91
MCF2L-211ENST00000413354 PARP3Q9Y6F1 533 aa20.75■□□□□ 0.91
MCF2L-211ENST00000413354 KDM3BQ7LBC6 1761 aa20.74■□□□□ 0.91
MCF2L-211ENST00000413354 SRP68Q9UHB9 627 aaKnown RBP20.74■□□□□ 0.91
MCF2L-211ENST00000413354 C10orf71Q711Q0 1435 aa20.73■□□□□ 0.91
MCF2L-211ENST00000413354 LAMB4A4D0S4 1761 aa20.73■□□□□ 0.91
MCF2L-211ENST00000413354 A0A087WZG4 1122 aa20.73■□□□□ 0.91
MCF2L-211ENST00000413354 WDR43Q15061 677 aaKnown RBP eCLIP20.73■□□□□ 0.91
MCF2L-211ENST00000413354 TAF7Q15545 349 aaPredicted RBP20.73■□□□□ 0.91
MCF2L-211ENST00000413354 PNISRQ8TF01 805 aaKnown RBP20.73■□□□□ 0.91
MCF2L-211ENST00000413354 KCNQ3O43525 872 aa20.72■□□□□ 0.91
MCF2L-211ENST00000413354 CANXP27824 592 aaKnown RBP20.72■□□□□ 0.91
MCF2L-211ENST00000413354 NARFQ9UHQ1 456 aa20.72■□□□□ 0.91
MCF2L-211ENST00000413354 SCN7AQ01118 1682 aa20.72■□□□□ 0.91
MCF2L-211ENST00000413354 GRIN3BO60391 1043 aa20.71■□□□□ 0.91
MCF2L-211ENST00000413354 FKBP8Q14318 412 aa20.71■□□□□ 0.91
MCF2L-211ENST00000413354 NPM2Q86SE8 214 aaKnown RBP20.71■□□□□ 0.91
MCF2L-211ENST00000413354 SNRPA1P09661 255 aaKnown RBP20.7■□□□□ 0.9
MCF2L-211ENST00000413354 LMOD3Q0VAK6 560 aa20.7■□□□□ 0.9
MCF2L-211ENST00000413354 USPL1Q5W0Q7 1092 aa20.7■□□□□ 0.9
MCF2L-211ENST00000413354 KIAA1551Q9HCM1 1747 aa20.7■□□□□ 0.9
MCF2L-211ENST00000413354 IL6STP40189 918 aaPredicted RBP20.69■□□□□ 0.9
MCF2L-211ENST00000413354 EIF5P55010 431 aaKnown RBP20.69■□□□□ 0.9
MCF2L-211ENST00000413354 N4BP2Q86UW6 1770 aaPredicted RBP20.69■□□□□ 0.9
MCF2L-211ENST00000413354 TGFB2P61812 414 aa20.68■□□□□ 0.9
MCF2L-211ENST00000413354 AFDNP55196 1824 aaKnown RBP20.68■□□□□ 0.9
MCF2L-211ENST00000413354 PXDNLA1KZ92 1463 aa20.68■□□□□ 0.9
MCF2L-211ENST00000413354 BCORQ6W2J9 1755 aa20.67■□□□□ 0.9
MCF2L-211ENST00000413354 YBX3P16989 372 aaKnown RBP eCLIP20.67■□□□□ 0.9
MCF2L-211ENST00000413354 BRCA1P38398 1863 aaKnown RBP20.67■□□□□ 0.9
MCF2L-211ENST00000413354 ZNF316A6NFI3 1004 aaPredicted RBP20.66■□□□□ 0.9
MCF2L-211ENST00000413354 RIPK4P57078 832 aa20.66■□□□□ 0.9
MCF2L-211ENST00000413354 ZNF330Q9Y3S2 320 aaPredicted RBP20.66■□□□□ 0.9
MCF2L-211ENST00000413354 NRXN2Q9P2S2 1712 aa20.66■□□□□ 0.9
MCF2L-211ENST00000413354 TM4SF1P30408 202 aa20.65■□□□□ 0.9
MCF2L-211ENST00000413354 TMPOP42166 694 aaKnown RBP20.65■□□□□ 0.9
MCF2L-211ENST00000413354 DDR1Q08345 913 aa20.65■□□□□ 0.9
MCF2L-211ENST00000413354 RUNDC1Q96C34 613 aa20.65■□□□□ 0.9
MCF2L-211ENST00000413354 POLRMTO00411 1230 aaKnown RBP20.64■□□□□ 0.89
MCF2L-211ENST00000413354 A1BGP04217 495 aa20.64■□□□□ 0.89
MCF2L-211ENST00000413354 THUMPD2Q9BTF0 503 aaKnown RBP20.64■□□□□ 0.89
MCF2L-211ENST00000413354 USP16Q9Y5T5 823 aa20.64■□□□□ 0.89
MCF2L-211ENST00000413354 NFIXQ14938 502 aa20.63■□□□□ 0.89
MCF2L-211ENST00000413354 CCDC146Q8IYE0 955 aa20.63■□□□□ 0.89
MCF2L-211ENST00000413354 MIS18AQ9NYP9 233 aa20.63■□□□□ 0.89
MCF2L-211ENST00000413354 BCL2L12Q9HB09 334 aa20.62■□□□□ 0.89
MCF2L-211ENST00000413354 BABAM1Q9NWV8 329 aa20.62■□□□□ 0.89
MCF2L-211ENST00000413354 ADAMTS8Q9UP79 889 aa20.62■□□□□ 0.89
MCF2L-211ENST00000413354 UTRNP46939 3433 aa20.62■□□□□ 0.89
MCF2L-211ENST00000413354 PRAMEF22A3QJZ6 481 aa20.61■□□□□ 0.89
MCF2L-211ENST00000413354 ARFGEF1Q9Y6D6 1849 aa20.61■□□□□ 0.89
MCF2L-211ENST00000413354 EIF4A1P60842 406 aaKnown RBP20.6■□□□□ 0.89
MCF2L-211ENST00000413354 DZIP3Q86Y13 1208 aaKnown RBP20.6■□□□□ 0.89
MCF2L-211ENST00000413354 TSPYL4Q9UJ04 414 aa20.6■□□□□ 0.89
MCF2L-211ENST00000413354 TBC1D2BQ9UPU7 963 aa20.6■□□□□ 0.89
MCF2L-211ENST00000413354 GOLGB1Q14789 3259 aaKnown RBP20.59■□□□□ 0.89
MCF2L-211ENST00000413354 CARMIL3Q8ND23 1372 aa20.59■□□□□ 0.89
MCF2L-211ENST00000413354 A0A0G2JLW4 131 aa20.58■□□□□ 0.89
MCF2L-211ENST00000413354 GIGYF1O75420 1035 aaPredicted RBP20.58■□□□□ 0.89
MCF2L-211ENST00000413354 CAMTA2O94983 1202 aa20.58■□□□□ 0.89
MCF2L-211ENST00000413354 SERPINB2P05120 415 aa20.58■□□□□ 0.89
MCF2L-211ENST00000413354 DPEP1P16444 411 aa20.58■□□□□ 0.89
MCF2L-211ENST00000413354 NEUROD2Q15784 382 aa20.58■□□□□ 0.89
MCF2L-211ENST00000413354 RRP7AQ9Y3A4 280 aaKnown RBP20.58■□□□□ 0.89
MCF2L-211ENST00000413354 DLEC1Q9Y238 1755 aa20.58■□□□□ 0.89
MCF2L-211ENST00000413354 WWC3Q9ULE0 1092 aa20.57■□□□□ 0.88
MCF2L-211ENST00000413354 ZNF652Q9Y2D9 606 aa20.57■□□□□ 0.88
MCF2L-211ENST00000413354 RGL2O15211 777 aa20.56■□□□□ 0.88
MCF2L-211ENST00000413354 PIP4K2AP48426 406 aaPredicted RBP20.56■□□□□ 0.88
MCF2L-211ENST00000413354 TBC1D9BQ66K14 1250 aa20.56■□□□□ 0.88
MCF2L-211ENST00000413354 BICDL1Q6ZP65 573 aa20.56■□□□□ 0.88
MCF2L-211ENST00000413354 BCS1LQ9Y276 419 aa20.56■□□□□ 0.88
MCF2L-211ENST00000413354 NBPF26B4DH59 902 aa20.55■□□□□ 0.88
MCF2L-211ENST00000413354 ANP32CO43423 234 aa20.55■□□□□ 0.88
MCF2L-211ENST00000413354 NBPF10Q6P3W6 841 aaKnown RBP20.55■□□□□ 0.88
MCF2L-211ENST00000413354 CLEC4GQ6UXB4 293 aa20.55■□□□□ 0.88
MCF2L-211ENST00000413354 NBPF15Q8N660 670 aa20.55■□□□□ 0.88
MCF2L-211ENST00000413354 ZNF784Q8NCA9 323 aaPredicted RBP20.55■□□□□ 0.88
MCF2L-211ENST00000413354 PIM2Q9P1W9 311 aa20.55■□□□□ 0.88
MCF2L-211ENST00000413354 ERBB4Q15303 1308 aa20.54■□□□□ 0.88
MCF2L-211ENST00000413354 SETDB2Q96T68 719 aa20.54■□□□□ 0.88
MCF2L-211ENST00000413354 ANKRD31Q8N7Z5 1873 aa20.54■□□□□ 0.88
MCF2L-211ENST00000413354 TRIM35Q9UPQ4 493 aa20.53■□□□□ 0.88
MCF2L-211ENST00000413354 NPHP1O15259 732 aa20.52■□□□□ 0.88
MCF2L-211ENST00000413354 KCNA3P22001 575 aa20.52■□□□□ 0.88
MCF2L-211ENST00000413354 PDZRN3Q9UPQ7 1066 aa20.52■□□□□ 0.88
MCF2L-211ENST00000413354 NUP98P52948 1817 aa20.52■□□□□ 0.88
MCF2L-211ENST00000413354 DALRD3Q5D0E6 543 aaKnown RBP20.51■□□□□ 0.87
MCF2L-211ENST00000413354 CNBD1Q8NA66 436 aa20.51■□□□□ 0.87
MCF2L-211ENST00000413354 CHRNA5P30532 468 aa20.5■□□□□ 0.87
MCF2L-211ENST00000413354 CHL1O00533 1208 aa20.49■□□□□ 0.87
MCF2L-211ENST00000413354 ST5P78524 1137 aa20.49■□□□□ 0.87
MCF2L-211ENST00000413354 CALD1Q05682 793 aaKnown RBP20.49■□□□□ 0.87
MCF2L-211ENST00000413354 PRR5LQ6MZQ0 368 aa20.49■□□□□ 0.87
MCF2L-211ENST00000413354 KIF6Q6ZMV9 814 aa20.49■□□□□ 0.87
MCF2L-211ENST00000413354 ERVV-1B6SEH8 477 aa20.48■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms