RNA–Protein interactions for RNA: ENST00000411819.1

MSH6-202, Transcript of mutS homolog 6, humanhuman

TSL 4

Gene MSH6, Length 548 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-202ENST00000411819 BCS1LQ9Y276 419 aa29.84■■■□□ 2.37
MSH6-202ENST00000411819 ZNF790Q6PG37 636 aa29.83■■■□□ 2.37
MSH6-202ENST00000411819 BRCA1P38398 1863 aaKnown RBP29.82■■■□□ 2.37
MSH6-202ENST00000411819 DPEP1P16444 411 aa29.82■■■□□ 2.36
MSH6-202ENST00000411819 CANXP27824 592 aaKnown RBP29.82■■■□□ 2.36
MSH6-202ENST00000411819 ZNF496Q96IT1 587 aaPredicted RBP29.82■■■□□ 2.36
MSH6-202ENST00000411819 CEMIPQ8WUJ3 1361 aa29.81■■■□□ 2.36
MSH6-202ENST00000411819 STARD3NLO95772 234 aa29.81■■■□□ 2.36
MSH6-202ENST00000411819 C1QTNF8P60827 252 aa29.81■■■□□ 2.36
MSH6-202ENST00000411819 ADCY9O60503 1353 aa29.8■■■□□ 2.36
MSH6-202ENST00000411819 HEG1Q9ULI3 1381 aa29.8■■■□□ 2.36
MSH6-202ENST00000411819 NARFQ9UHQ1 456 aa29.79■■■□□ 2.36
MSH6-202ENST00000411819 POLRMTO00411 1230 aaKnown RBP29.78■■■□□ 2.36
MSH6-202ENST00000411819 BTBD11A6QL63 1104 aa29.77■■■□□ 2.36
MSH6-202ENST00000411819 FCHSD2O94868 740 aa29.77■■■□□ 2.36
MSH6-202ENST00000411819 RTF1Q92541 710 aaKnown RBP29.77■■■□□ 2.36
MSH6-202ENST00000411819 AFDNP55196 1824 aaKnown RBP29.77■■■□□ 2.36
MSH6-202ENST00000411819 TM4SF1P30408 202 aa29.76■■■□□ 2.35
MSH6-202ENST00000411819 ZNF526Q8TF50 670 aaPredicted RBP29.76■■■□□ 2.35
MSH6-202ENST00000411819 FMNL2Q96PY5 1086 aa29.76■■■□□ 2.35
MSH6-202ENST00000411819 ZNF330Q9Y3S2 320 aaPredicted RBP29.76■■■□□ 2.35
MSH6-202ENST00000411819 TEX13AQ9BXU3 409 aaPredicted RBP29.75■■■□□ 2.35
MSH6-202ENST00000411819 GPBP1L1Q9HC44 474 aaPredicted RBP29.75■■■□□ 2.35
MSH6-202ENST00000411819 ARFGEF1Q9Y6D6 1849 aa29.74■■■□□ 2.35
MSH6-202ENST00000411819 SENP3-EIF4A1A0A087X0R7 540 aa29.73■■■□□ 2.35
MSH6-202ENST00000411819 NFIXQ14938 502 aa29.73■■■□□ 2.35
MSH6-202ENST00000411819 MCM10Q7L590 875 aa29.73■■■□□ 2.35
MSH6-202ENST00000411819 SCN7AQ01118 1682 aa29.72■■■□□ 2.35
MSH6-202ENST00000411819 A0A087WZG4 1122 aa29.72■■■□□ 2.35
MSH6-202ENST00000411819 KCNQ3O43525 872 aa29.72■■■□□ 2.35
MSH6-202ENST00000411819 BCL2L12Q9HB09 334 aa29.72■■■□□ 2.35
MSH6-202ENST00000411819 PIM2Q9P1W9 311 aa29.72■■■□□ 2.35
MSH6-202ENST00000411819 NRXN2Q9P2S2 1712 aa29.71■■■□□ 2.35
MSH6-202ENST00000411819 KCNA3P22001 575 aa29.71■■■□□ 2.35
MSH6-202ENST00000411819 EIF5P55010 431 aaKnown RBP29.71■■■□□ 2.35
MSH6-202ENST00000411819 ARHGAP27Q6ZUM4 889 aa29.71■■■□□ 2.35
MSH6-202ENST00000411819 NEFMP07197 916 aa29.7■■■□□ 2.35
MSH6-202ENST00000411819 CHRNA5P30532 468 aa29.7■■■□□ 2.35
MSH6-202ENST00000411819 DCTN1Q14203 1278 aa29.69■■■□□ 2.34
MSH6-202ENST00000411819 BICDL1Q6ZP65 573 aa29.69■■■□□ 2.34
MSH6-202ENST00000411819 NPM2Q86SE8 214 aaKnown RBP29.69■■■□□ 2.34
MSH6-202ENST00000411819 DALRD3Q5D0E6 543 aaKnown RBP29.68■■■□□ 2.34
MSH6-202ENST00000411819 DLG5Q8TDM6 1919 aa29.67■■■□□ 2.34
MSH6-202ENST00000411819 SERPINB2P05120 415 aa29.67■■■□□ 2.34
MSH6-202ENST00000411819 A1BGP04217 495 aa29.66■■■□□ 2.34
MSH6-202ENST00000411819 IL6STP40189 918 aaPredicted RBP29.66■■■□□ 2.34
MSH6-202ENST00000411819 TBC1D2BQ9UPU7 963 aa29.65■■■□□ 2.34
MSH6-202ENST00000411819 HTATSF1O43719 755 aaKnown RBP29.64■■■□□ 2.34
MSH6-202ENST00000411819 DLEC1Q9Y238 1755 aa29.64■■■□□ 2.34
MSH6-202ENST00000411819 BCORQ6W2J9 1755 aa29.62■■■□□ 2.33
MSH6-202ENST00000411819 TBC1D9BQ66K14 1250 aa29.62■■■□□ 2.33
MSH6-202ENST00000411819 CARMIL3Q8ND23 1372 aa29.62■■■□□ 2.33
MSH6-202ENST00000411819 PRAMEF22A3QJZ6 481 aa29.61■■■□□ 2.33
MSH6-202ENST00000411819 PIP4K2AP48426 406 aaPredicted RBP29.61■■■□□ 2.33
MSH6-202ENST00000411819 USP16Q9Y5T5 823 aa29.61■■■□□ 2.33
MSH6-202ENST00000411819 SNRPA1P09661 255 aaKnown RBP29.6■■■□□ 2.33
MSH6-202ENST00000411819 DZIP3Q86Y13 1208 aaKnown RBP29.58■■■□□ 2.33
MSH6-202ENST00000411819 MAPK8IP3Q9UPT6 1336 aa29.58■■■□□ 2.33
MSH6-202ENST00000411819 TAF7Q15545 349 aaPredicted RBP29.57■■■□□ 2.32
MSH6-202ENST00000411819 C9orf131Q5VYM1 1079 aa29.57■■■□□ 2.32
MSH6-202ENST00000411819 ANKRD31Q8N7Z5 1873 aa29.57■■■□□ 2.32
MSH6-202ENST00000411819 LAMB4A4D0S4 1761 aa29.57■■■□□ 2.32
MSH6-202ENST00000411819 CAMTA2O94983 1202 aa29.56■■■□□ 2.32
MSH6-202ENST00000411819 C2CD5Q86YS7 1000 aa29.56■■■□□ 2.32
MSH6-202ENST00000411819 PLEKHF1Q96S99 279 aa29.56■■■□□ 2.32
MSH6-202ENST00000411819 KDM3BQ7LBC6 1761 aa29.55■■■□□ 2.32
MSH6-202ENST00000411819 MIS18AQ9NYP9 233 aa29.55■■■□□ 2.32
MSH6-202ENST00000411819 NPHP1O15259 732 aa29.54■■■□□ 2.32
MSH6-202ENST00000411819 RALBP1Q15311 655 aa29.54■■■□□ 2.32
MSH6-202ENST00000411819 NFE2L2Q16236 605 aa29.54■■■□□ 2.32
MSH6-202ENST00000411819 PNNQ9H307 717 aaKnown RBP29.54■■■□□ 2.32
MSH6-202ENST00000411819 H0YIN7 160 aa29.53■■■□□ 2.32
MSH6-202ENST00000411819 DDX10Q13206 875 aaKnown RBP29.53■■■□□ 2.32
MSH6-202ENST00000411819 SETDB2Q96T68 719 aa29.53■■■□□ 2.32
MSH6-202ENST00000411819 RNF181Q9P0P0 153 aa29.53■■■□□ 2.32
MSH6-202ENST00000411819 COL11A2P13942 1736 aaPredicted RBP29.52■■■□□ 2.32
MSH6-202ENST00000411819 PRR5LQ6MZQ0 368 aa29.52■■■□□ 2.32
MSH6-202ENST00000411819 CCDC24Q8N4L8 307 aa29.52■■■□□ 2.32
MSH6-202ENST00000411819 SBF1O95248 1867 aa29.52■■■□□ 2.32
MSH6-202ENST00000411819 KIF3CO14782 793 aa29.51■■■□□ 2.31
MSH6-202ENST00000411819 TTLL6Q8N841 843 aa29.51■■■□□ 2.31
MSH6-202ENST00000411819 PNISRQ8TF01 805 aaKnown RBP29.51■■■□□ 2.31
MSH6-202ENST00000411819 CNBD1Q8NA66 436 aa29.5■■■□□ 2.31
MSH6-202ENST00000411819 THUMPD2Q9BTF0 503 aaKnown RBP29.5■■■□□ 2.31
MSH6-202ENST00000411819 RASSF7Q02833 373 aa29.49■■■□□ 2.31
MSH6-202ENST00000411819 PDE6BP35913 854 aa29.48■■■□□ 2.31
MSH6-202ENST00000411819 ZNF622Q969S3 477 aaKnown RBP eCLIP29.48■■■□□ 2.312e-19■■■■□ 21.7
MSH6-202ENST00000411819 BRIP1Q9BX63 1249 aa29.48■■■□□ 2.31
MSH6-202ENST00000411819 ZNF652Q9Y2D9 606 aa29.48■■■□□ 2.31
MSH6-202ENST00000411819 NBPF26B4DH59 902 aa29.47■■■□□ 2.31
MSH6-202ENST00000411819 ST5P78524 1137 aa29.47■■■□□ 2.31
MSH6-202ENST00000411819 NBPF10Q6P3W6 841 aaKnown RBP29.47■■■□□ 2.31
MSH6-202ENST00000411819 NBPF15Q8N660 670 aa29.47■■■□□ 2.31
MSH6-202ENST00000411819 CACNA1SQ13698 1873 aa29.46■■■□□ 2.31
MSH6-202ENST00000411819 NMRK2Q9NPI5 230 aa29.45■■■□□ 2.31
MSH6-202ENST00000411819 PDZRN3Q9UPQ7 1066 aa29.45■■■□□ 2.31
MSH6-202ENST00000411819 MYBBP1AQ9BQG0 1328 aaKnown RBP29.45■■■□□ 2.3
MSH6-202ENST00000411819 CLEC4GQ6UXB4 293 aa29.44■■■□□ 2.3
MSH6-202ENST00000411819 NBPF5PQ86XG9 351 aaPredicted RBP29.43■■■□□ 2.3
MSH6-202ENST00000411819 ZNF219Q9P2Y4 722 aaPredicted RBP29.42■■■□□ 2.3
Retrieved 100 of 20,778 RNA–protein pairs in 123.6 ms