RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 PLPP7Q8NBV4 271 aa6.88□□□□□ -1.31
HMGB1-204ENST00000399489 FHDC1Q9C0D6 1143 aaPredicted RBP6.88□□□□□ -1.31
HMGB1-204ENST00000399489 PPARGC1BQ86YN6 1023 aaKnown RBP6.87□□□□□ -1.31
HMGB1-204ENST00000399489 ETNK1Q9HBU6 452 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 HRH3Q9Y5N1 445 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 RAD21O60216 631 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 MSX1P28360 303 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 MCM6Q14566 821 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 TBC1D9Q6ZT07 1266 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 C1orf115Q9H7X2 142 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 LRRC4BQ9NT99 713 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 CHIC2Q9UKJ5 165 aa6.87□□□□□ -1.31
HMGB1-204ENST00000399489 GDF10P55107 478 aa6.86□□□□□ -1.31
HMGB1-204ENST00000399489 TSGA10IPQ3SY00 556 aa6.86□□□□□ -1.31
HMGB1-204ENST00000399489 ARID3AQ99856 593 aa6.86□□□□□ -1.31
HMGB1-204ENST00000399489 NIFKQ9BYG3 293 aaKnown RBP6.86□□□□□ -1.31
HMGB1-204ENST00000399489 LZTS3O60299 673 aaPredicted RBP6.85□□□□□ -1.31
HMGB1-204ENST00000399489 INHAP05111 366 aa6.85□□□□□ -1.31
HMGB1-204ENST00000399489 FIGNL1Q6PIW4 674 aa6.85□□□□□ -1.31
HMGB1-204ENST00000399489 C1orf216Q8TAB5 229 aa6.85□□□□□ -1.31
HMGB1-204ENST00000399489 ACDQ96AP0 544 aa6.85□□□□□ -1.31
HMGB1-204ENST00000399489 OXCT2Q9BYC2 517 aaPredicted RBP6.85□□□□□ -1.31
HMGB1-204ENST00000399489 RUBCNLQ9H714 662 aa6.85□□□□□ -1.31
HMGB1-204ENST00000399489 ATXN7L1Q9ULK2 861 aaPredicted RBP6.85□□□□□ -1.31
HMGB1-204ENST00000399489 PLA2G4AP47712 749 aa6.84□□□□□ -1.31
HMGB1-204ENST00000399489 EML3Q32P44 896 aa6.84□□□□□ -1.31
HMGB1-204ENST00000399489 GDF2Q9UK05 429 aaPredicted RBP6.84□□□□□ -1.31
HMGB1-204ENST00000399489 ZBTB7CA1YPR0 619 aa6.84□□□□□ -1.31
HMGB1-204ENST00000399489 NBPF1Q3BBV0 1214 aa6.84□□□□□ -1.31
HMGB1-204ENST00000399489 AIDAQ96BJ3 306 aa6.84□□□□□ -1.31
HMGB1-204ENST00000399489 SEMA6BQ9H3T3 888 aa6.84□□□□□ -1.31
HMGB1-204ENST00000399489 NOD1Q9Y239 953 aa6.84□□□□□ -1.31
HMGB1-204ENST00000399489 BACH1O14867 736 aa6.83□□□□□ -1.32
HMGB1-204ENST00000399489 BMP4P12644 408 aa6.83□□□□□ -1.32
HMGB1-204ENST00000399489 TATP17735 454 aaPredicted RBP6.83□□□□□ -1.32
HMGB1-204ENST00000399489 SMTNP53814 917 aa6.83□□□□□ -1.32
HMGB1-204ENST00000399489 FMNL2Q96PY5 1086 aa6.83□□□□□ -1.32
HMGB1-204ENST00000399489 KRBA1A5PL33 1030 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 PAX4O43316 350 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 OIP5O43482 229 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 SKIP12755 728 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 GOLGA6L1Q8N7Z2 621 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 CRISPLD1Q9H336 500 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 SERTAD1Q9UHV2 236 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 COG6Q9Y2V7 657 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 GJA3Q9Y6H8 435 aa6.82□□□□□ -1.32
HMGB1-204ENST00000399489 SCNN1DP51172 638 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 PSME1Q06323 249 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 FLIIQ13045 1269 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 ALYREFQ86V81 257 aaKnown RBP6.81□□□□□ -1.32
HMGB1-204ENST00000399489 KLRG1Q96E93 195 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 PIK3R2O00459 728 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 STAU1O95793 577 aaKnown RBP6.81□□□□□ -1.32
HMGB1-204ENST00000399489 FGFR3P22607 806 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 FOXD4L6Q3SYB3 417 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-204ENST00000399489 FOXD4L3Q6VB84 417 aaPredicted RBP6.81□□□□□ -1.32
HMGB1-204ENST00000399489 NLRP8Q86W28 1048 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 NFATC2IPQ8NCF5 419 aa6.81□□□□□ -1.32
HMGB1-204ENST00000399489 CDK2AP1O14519 115 aa6.8□□□□□ -1.32
HMGB1-204ENST00000399489 ARSJQ5FYB0 599 aaPredicted RBP6.8□□□□□ -1.32
HMGB1-204ENST00000399489 ABHD17AQ96GS6 310 aa6.8□□□□□ -1.32
HMGB1-204ENST00000399489 RRAGCQ9HB90 399 aa6.8□□□□□ -1.32
HMGB1-204ENST00000399489 CABP1Q9NZU7 370 aa6.8□□□□□ -1.32
HMGB1-204ENST00000399489 MKL2Q9ULH7 1088 aa6.8□□□□□ -1.32
HMGB1-204ENST00000399489 PCDHGC4Q9Y5F7 938 aa6.8□□□□□ -1.32
HMGB1-204ENST00000399489 A6NJY4 79 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 PDIA4P13667 645 aaKnown RBP6.79□□□□□ -1.32
HMGB1-204ENST00000399489 AMPD1P23109 780 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 EDARADDQ8WWZ3 215 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 ATXN7O15265 892 aaPredicted RBP6.79□□□□□ -1.32
HMGB1-204ENST00000399489 THBS1P07996 1170 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 MCTP1Q6DN14 999 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 TRIM50Q86XT4 487 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 SLC4A9Q96Q91 983 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 ZDHHC3Q9NYG2 299 aa6.79□□□□□ -1.32
HMGB1-204ENST00000399489 GTF2IP78347 998 aa6.78□□□□□ -1.32
HMGB1-204ENST00000399489 BICDL1Q6ZP65 573 aa6.78□□□□□ -1.32
HMGB1-204ENST00000399489 ZCCHC2Q9C0B9 1178 aaKnown RBP6.78□□□□□ -1.32
HMGB1-204ENST00000399489 BNIP3LO60238 219 aa6.77□□□□□ -1.33
HMGB1-204ENST00000399489 MTFR1Q15390 333 aa6.77□□□□□ -1.33
HMGB1-204ENST00000399489 ALG2Q9H553 416 aa6.77□□□□□ -1.33
HMGB1-204ENST00000399489 NEUROD4Q9HD90 331 aa6.77□□□□□ -1.33
HMGB1-204ENST00000399489 A0A1W2PNR3 127 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 TMEM229AB2RXF0 380 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 PIK3CDO00329 1044 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 UBAP2LQ14157 1087 aaKnown RBP6.76□□□□□ -1.33
HMGB1-204ENST00000399489 SLCO4C1Q6ZQN7 724 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 ARAFP10398 606 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 ATP1A2P50993 1020 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 NCOA4Q13772 614 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 NDFIP2Q9NV92 336 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 GGA1Q9UJY5 639 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 CHMP3Q9Y3E7 222 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 RBM19Q9Y4C8 960 aaKnown RBP6.76□□□□□ -1.33
HMGB1-204ENST00000399489 PCDHGA11Q9Y5H2 935 aa6.76□□□□□ -1.33
HMGB1-204ENST00000399489 LOC105371045A0A1W2PR82 267 aa6.75□□□□□ -1.33
HMGB1-204ENST00000399489 USP17L5A8MUK1 530 aa6.75□□□□□ -1.33
HMGB1-204ENST00000399489 KHNYNO15037 678 aaKnown RBP6.75□□□□□ -1.33
HMGB1-204ENST00000399489 ATP4AP20648 1035 aa6.75□□□□□ -1.33
HMGB1-204ENST00000399489 CTBSQ01459 385 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms