RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 GYS1P13807 737 aa18.44■□□□□ 0.54
SEC13-204ENST00000397099 PNISRQ8TF01 805 aaKnown RBP18.44■□□□□ 0.54
SEC13-204ENST00000397099 USP42Q9H9J4 1324 aaKnown RBP18.44■□□□□ 0.54
SEC13-204ENST00000397099 A0A087WZG4 1122 aa18.43■□□□□ 0.54
SEC13-204ENST00000397099 NFE2L2Q16236 605 aa18.43■□□□□ 0.54
SEC13-204ENST00000397099 ZNF496Q96IT1 587 aaPredicted RBP18.43■□□□□ 0.54
SEC13-204ENST00000397099 PARP3Q9Y6F1 533 aa18.43■□□□□ 0.54
SEC13-204ENST00000397099 SOS1Q07889 1333 aaPredicted RBP18.43■□□□□ 0.54
SEC13-204ENST00000397099 TAF7Q15545 349 aaPredicted RBP18.42■□□□□ 0.54
SEC13-204ENST00000397099 SRP68Q9UHB9 627 aaKnown RBP18.42■□□□□ 0.54
SEC13-204ENST00000397099 KIF13BQ9NQT8 1826 aa18.42■□□□□ 0.54
SEC13-204ENST00000397099 MCM10Q7L590 875 aa18.41■□□□□ 0.54
SEC13-204ENST00000397099 NPM2Q86SE8 214 aaKnown RBP18.41■□□□□ 0.54
SEC13-204ENST00000397099 PRKRIP1Q9H875 184 aaPredicted RBP18.41■□□□□ 0.54
SEC13-204ENST00000397099 COL15A1P39059 1388 aa18.41■□□□□ 0.54
SEC13-204ENST00000397099 LMOD3Q0VAK6 560 aa18.4■□□□□ 0.54
SEC13-204ENST00000397099 WDR43Q15061 677 aaKnown RBP eCLIP18.4■□□□□ 0.54
SEC13-204ENST00000397099 NARFQ9UHQ1 456 aa18.4■□□□□ 0.54
SEC13-204ENST00000397099 TGFB2P61812 414 aa18.39■□□□□ 0.53
SEC13-204ENST00000397099 ZBTB1Q9Y2K1 713 aa18.39■□□□□ 0.53
SEC13-204ENST00000397099 A0A0G2JLW4 131 aa18.38■□□□□ 0.53
SEC13-204ENST00000397099 GIGYF1O75420 1035 aaPredicted RBP18.38■□□□□ 0.53
SEC13-204ENST00000397099 SNRPA1P09661 255 aaKnown RBP18.38■□□□□ 0.53
SEC13-204ENST00000397099 IL6STP40189 918 aaPredicted RBP18.38■□□□□ 0.53
SEC13-204ENST00000397099 FKBP8Q14318 412 aa18.38■□□□□ 0.53
SEC13-204ENST00000397099 EIF5P55010 431 aaKnown RBP18.37■□□□□ 0.53
SEC13-204ENST00000397099 C10orf71Q711Q0 1435 aa18.37■□□□□ 0.53
SEC13-204ENST00000397099 PXDNLA1KZ92 1463 aa18.37■□□□□ 0.53
SEC13-204ENST00000397099 DCTN1Q14203 1278 aa18.36■□□□□ 0.53
SEC13-204ENST00000397099 BABAM1Q9NWV8 329 aa18.36■□□□□ 0.53
SEC13-204ENST00000397099 CANXP27824 592 aaKnown RBP18.35■□□□□ 0.53
SEC13-204ENST00000397099 C1QTNF8P60827 252 aa18.35■□□□□ 0.53
SEC13-204ENST00000397099 USPL1Q5W0Q7 1092 aa18.35■□□□□ 0.53
SEC13-204ENST00000397099 BCS1LQ9Y276 419 aa18.35■□□□□ 0.53
SEC13-204ENST00000397099 KDM3BQ7LBC6 1761 aa18.35■□□□□ 0.53
SEC13-204ENST00000397099 ATP10DQ9P241 1426 aa18.34■□□□□ 0.53
SEC13-204ENST00000397099 ZNF316A6NFI3 1004 aaPredicted RBP18.34■□□□□ 0.53
SEC13-204ENST00000397099 DPEP1P16444 411 aa18.34■□□□□ 0.53
SEC13-204ENST00000397099 TM4SF1P30408 202 aa18.34■□□□□ 0.53
SEC13-204ENST00000397099 RUNDC1Q96C34 613 aa18.34■□□□□ 0.53
SEC13-204ENST00000397099 N4BP2Q86UW6 1770 aaPredicted RBP18.33■□□□□ 0.53
SEC13-204ENST00000397099 RGL2O15211 777 aa18.33■□□□□ 0.52
SEC13-204ENST00000397099 RIPK4P57078 832 aa18.33■□□□□ 0.52
SEC13-204ENST00000397099 DDR1Q08345 913 aa18.33■□□□□ 0.52
SEC13-204ENST00000397099 ZNF526Q8TF50 670 aaPredicted RBP18.33■□□□□ 0.52
SEC13-204ENST00000397099 LAMB4A4D0S4 1761 aa18.32■□□□□ 0.52
SEC13-204ENST00000397099 KCNQ3O43525 872 aa18.32■□□□□ 0.52
SEC13-204ENST00000397099 TMPOP42166 694 aaKnown RBP18.32■□□□□ 0.52
SEC13-204ENST00000397099 SCN7AQ01118 1682 aa18.31■□□□□ 0.52
SEC13-204ENST00000397099 GPBP1L1Q9HC44 474 aaPredicted RBP18.31■□□□□ 0.52
SEC13-204ENST00000397099 ZNF330Q9Y3S2 320 aaPredicted RBP18.31■□□□□ 0.52
SEC13-204ENST00000397099 SENP3-EIF4A1A0A087X0R7 540 aa18.3■□□□□ 0.52
SEC13-204ENST00000397099 POLRMTO00411 1230 aaKnown RBP18.3■□□□□ 0.52
SEC13-204ENST00000397099 ARHGAP27Q6ZUM4 889 aa18.3■□□□□ 0.52
SEC13-204ENST00000397099 USP16Q9Y5T5 823 aa18.3■□□□□ 0.52
SEC13-204ENST00000397099 KIAA1551Q9HCM1 1747 aa18.29■□□□□ 0.52
SEC13-204ENST00000397099 NRXN2Q9P2S2 1712 aa18.29■□□□□ 0.52
SEC13-204ENST00000397099 A1BGP04217 495 aa18.29■□□□□ 0.52
SEC13-204ENST00000397099 CLEC4GQ6UXB4 293 aa18.29■□□□□ 0.52
SEC13-204ENST00000397099 ADAMTS8Q9UP79 889 aa18.29■□□□□ 0.52
SEC13-204ENST00000397099 ZNF652Q9Y2D9 606 aa18.29■□□□□ 0.52
SEC13-204ENST00000397099 NFIXQ14938 502 aa18.28■□□□□ 0.52
SEC13-204ENST00000397099 PIM2Q9P1W9 311 aa18.28■□□□□ 0.52
SEC13-204ENST00000397099 PDZRN3Q9UPQ7 1066 aa18.28■□□□□ 0.52
SEC13-204ENST00000397099 BRCA1P38398 1863 aaKnown RBP18.28■□□□□ 0.52
SEC13-204ENST00000397099 ADCY9O60503 1353 aa18.28■□□□□ 0.52
SEC13-204ENST00000397099 AFDNP55196 1824 aaKnown RBP18.28■□□□□ 0.52
SEC13-204ENST00000397099 BCORQ6W2J9 1755 aa18.27■□□□□ 0.52
SEC13-204ENST00000397099 EIF4A1P60842 406 aaKnown RBP18.27■□□□□ 0.52
SEC13-204ENST00000397099 DZIP3Q86Y13 1208 aaKnown RBP18.27■□□□□ 0.52
SEC13-204ENST00000397099 TSPYL4Q9UJ04 414 aa18.27■□□□□ 0.52
SEC13-204ENST00000397099 ERBB4Q15303 1308 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 SERPINB2P05120 415 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 KCNA3P22001 575 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 CHRNA5P30532 468 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 DALRD3Q5D0E6 543 aaKnown RBP18.26■□□□□ 0.51
SEC13-204ENST00000397099 BICDL1Q6ZP65 573 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 BCL2L12Q9HB09 334 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 MIS18AQ9NYP9 233 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 TBC1D2BQ9UPU7 963 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 CARMIL3Q8ND23 1372 aa18.26■□□□□ 0.51
SEC13-204ENST00000397099 CALD1Q05682 793 aaKnown RBP18.25■□□□□ 0.51
SEC13-204ENST00000397099 SETDB2Q96T68 719 aa18.25■□□□□ 0.51
SEC13-204ENST00000397099 ARFGEF1Q9Y6D6 1849 aa18.25■□□□□ 0.51
SEC13-204ENST00000397099 ANP32CO43423 234 aa18.24■□□□□ 0.51
SEC13-204ENST00000397099 CAMTA2O94983 1202 aa18.24■□□□□ 0.51
SEC13-204ENST00000397099 CCDC146Q8IYE0 955 aa18.24■□□□□ 0.51
SEC13-204ENST00000397099 THUMPD2Q9BTF0 503 aaKnown RBP18.24■□□□□ 0.51
SEC13-204ENST00000397099 PRAMEF22A3QJZ6 481 aa18.23■□□□□ 0.51
SEC13-204ENST00000397099 NEUROD2Q15784 382 aa18.22■□□□□ 0.51
SEC13-204ENST00000397099 NBPF26B4DH59 902 aa18.21■□□□□ 0.51
SEC13-204ENST00000397099 PDE6BP35913 854 aa18.21■□□□□ 0.51
SEC13-204ENST00000397099 TBC1D9BQ66K14 1250 aa18.21■□□□□ 0.51
SEC13-204ENST00000397099 NBPF10Q6P3W6 841 aaKnown RBP18.21■□□□□ 0.51
SEC13-204ENST00000397099 NBPF15Q8N660 670 aa18.21■□□□□ 0.51
SEC13-204ENST00000397099 BRIP1Q9BX63 1249 aa18.21■□□□□ 0.51
SEC13-204ENST00000397099 TRIM35Q9UPQ4 493 aa18.21■□□□□ 0.51
SEC13-204ENST00000397099 DLEC1Q9Y238 1755 aa18.21■□□□□ 0.51
SEC13-204ENST00000397099 ERVV-1B6SEH8 477 aa18.2■□□□□ 0.5
SEC13-204ENST00000397099 H0YIN7 160 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms