RNA–Protein interactions for RNA: ENST00000393824.7

CUX1-204, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-204ENST00000393824 FTSJ3Q8IY81 847 aaKnown RBP13.7□□□□□ -0.22
CUX1-204ENST00000393824 IFT57Q9NWB7 429 aa13.7□□□□□ -0.22
CUX1-204ENST00000393824 SPATA31A1Q5TZJ5 1347 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 GOLGA6L22H0YM25 854 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 HSP90AB1P08238 724 aaKnown RBP13.69□□□□□ -0.22
CUX1-204ENST00000393824 FNBP4Q8N3X1 1017 aaPredicted RBP13.69□□□□□ -0.22
CUX1-204ENST00000393824 C8orf58Q8NAV2 365 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 PDLIM2Q96JY6 352 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 FAM13BQ9NYF5 915 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 CHL1O00533 1208 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 DYNC1I1O14576 645 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 KCNQ3O43525 872 aa13.69□□□□□ -0.22
CUX1-204ENST00000393824 DDX54Q8TDD1 881 aaKnown RBP13.69□□□□□ -0.22
CUX1-204ENST00000393824 R3HCC1Q9Y3T6 440 aaKnown RBP13.69□□□□□ -0.22
CUX1-204ENST00000393824 DISP2A7MBM2 1401 aa13.68□□□□□ -0.22
CUX1-204ENST00000393824 UNC5CLQ8IV45 518 aa13.68□□□□□ -0.22
CUX1-204ENST00000393824 LRRC37A3O60309 1634 aa13.68□□□□□ -0.22
CUX1-204ENST00000393824 SPATA31A5Q5VU36 1347 aa13.68□□□□□ -0.22
CUX1-204ENST00000393824 SPATA31A7Q8IWB4 1347 aa13.68□□□□□ -0.22
CUX1-204ENST00000393824 RNMTO43148 476 aaKnown RBP13.68□□□□□ -0.22
CUX1-204ENST00000393824 TAF7LQ5H9L4 462 aa13.68□□□□□ -0.22
CUX1-204ENST00000393824 C1orf141Q5JVX7 400 aa13.68□□□□□ -0.22
CUX1-204ENST00000393824 ZCRB1Q8TBF4 217 aaKnown RBP13.68□□□□□ -0.22
CUX1-204ENST00000393824 GNAI1P63096 354 aa13.67□□□□□ -0.22
CUX1-204ENST00000393824 KIF2CQ99661 725 aa13.67□□□□□ -0.22
CUX1-204ENST00000393824 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.67□□□□□ -0.227e-7■■□□□ 13.1
CUX1-204ENST00000393824 SPG7Q9UQ90 795 aa13.67□□□□□ -0.22
CUX1-204ENST00000393824 CCDC9Q9Y3X0 531 aaKnown RBP13.67□□□□□ -0.22
CUX1-204ENST00000393824 PKD1L3Q7Z443 1732 aa13.67□□□□□ -0.22
CUX1-204ENST00000393824 SHANK3Q9BYB0 1731 aa13.67□□□□□ -0.22
CUX1-204ENST00000393824 HTATSF1O43719 755 aaKnown RBP13.67□□□□□ -0.22
CUX1-204ENST00000393824 MCM5P33992 734 aa13.67□□□□□ -0.22
CUX1-204ENST00000393824 CSPP1Q1MSJ5 1256 aa13.67□□□□□ -0.22
CUX1-204ENST00000393824 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.67□□□□□ -0.22
CUX1-204ENST00000393824 UQCRHLA0A096LP55 91 aa13.66□□□□□ -0.22
CUX1-204ENST00000393824 UQCRHP07919 91 aa13.66□□□□□ -0.22
CUX1-204ENST00000393824 USP21Q9UK80 565 aa13.66□□□□□ -0.22
CUX1-204ENST00000393824 DDX49Q9Y6V7 483 aaKnown RBP13.66□□□□□ -0.22
CUX1-204ENST00000393824 K7ELQ4 463 aaPredicted RBP13.65□□□□□ -0.22
CUX1-204ENST00000393824 IFNL2Q8IZJ0 200 aa13.65□□□□□ -0.22
CUX1-204ENST00000393824 TSPYL4Q9UJ04 414 aa13.65□□□□□ -0.22
CUX1-204ENST00000393824 AFF2P51816 1311 aa13.65□□□□□ -0.22
CUX1-204ENST00000393824 FAM98CQ17RN3 349 aaKnown RBP13.65□□□□□ -0.22
CUX1-204ENST00000393824 MEX3CQ5U5Q3 659 aaKnown RBP13.65□□□□□ -0.22
CUX1-204ENST00000393824 ATF7IPQ6VMQ6 1270 aa13.65□□□□□ -0.22
CUX1-204ENST00000393824 BAG4O95429 457 aaKnown RBP13.64□□□□□ -0.23
CUX1-204ENST00000393824 NFATC2IPQ8NCF5 419 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 NWD2Q9ULI1 1742 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 IPO8O15397 1037 aaKnown RBP13.64□□□□□ -0.23
CUX1-204ENST00000393824 VAMP4O75379 141 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 SLC39A6Q13433 755 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 TAF7Q15545 349 aaPredicted RBP13.64□□□□□ -0.23
CUX1-204ENST00000393824 UTP14CQ5TAP6 766 aaKnown RBP13.64□□□□□ -0.23
CUX1-204ENST00000393824 BBXQ8WY36 941 aaPredicted RBP13.64□□□□□ -0.23
CUX1-204ENST00000393824 SSH1Q8WYL5 1049 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 SMC4Q9NTJ3 1288 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 ZKSCAN5Q9Y2L8 839 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 KIF16BQ96L93 1317 aa13.64□□□□□ -0.23
CUX1-204ENST00000393824 PARP4Q9UKK3 1724 aaKnown RBP13.64□□□□□ -0.23
CUX1-204ENST00000393824 TRIM27P14373 513 aa13.63□□□□□ -0.23
CUX1-204ENST00000393824 SSFA2P28290 1259 aa13.63□□□□□ -0.23
CUX1-204ENST00000393824 PCDH11XQ9BZA7 1347 aa13.63□□□□□ -0.23
CUX1-204ENST00000393824 PCDH11YQ9BZA8 1340 aa13.63□□□□□ -0.23
CUX1-204ENST00000393824 VPS72Q15906 364 aa13.63□□□□□ -0.23
CUX1-204ENST00000393824 ZBTB40Q9NUA8 1239 aa13.63□□□□□ -0.23
CUX1-204ENST00000393824 ADAMTS7Q9UKP4 1686 aa13.62□□□□□ -0.23
CUX1-204ENST00000393824 PRAMEF22A3QJZ6 481 aa13.62□□□□□ -0.23
CUX1-204ENST00000393824 NUCB1Q02818 461 aa13.62□□□□□ -0.23
CUX1-204ENST00000393824 TEFQ10587 303 aa13.62□□□□□ -0.23
CUX1-204ENST00000393824 TWISTNBQ3B726 338 aaPredicted RBP13.62□□□□□ -0.23
CUX1-204ENST00000393824 BMP2KLQ5H9B9 411 aa13.62□□□□□ -0.23
CUX1-204ENST00000393824 CHMP4BQ9H444 224 aaKnown RBP13.62□□□□□ -0.23
CUX1-204ENST00000393824 CD2BP2O95400 341 aaKnown RBP13.62□□□□□ -0.23
CUX1-204ENST00000393824 ZNF428Q96B54 188 aa13.62□□□□□ -0.23
CUX1-204ENST00000393824 SLC52A2Q9HAB3 445 aa13.62□□□□□ -0.23
CUX1-204ENST00000393824 BTBD11A6QL63 1104 aa13.61□□□□□ -0.23
CUX1-204ENST00000393824 BRPF1P55201 1214 aaPredicted RBP13.61□□□□□ -0.23
CUX1-204ENST00000393824 ALDH1L2Q3SY69 923 aa13.61□□□□□ -0.23
CUX1-204ENST00000393824 SASS6Q6UVJ0 657 aa13.61□□□□□ -0.23
CUX1-204ENST00000393824 DCAF5Q96JK2 942 aa13.61□□□□□ -0.23
CUX1-204ENST00000393824 ZSCAN23Q3MJ62 389 aa13.61□□□□□ -0.23
CUX1-204ENST00000393824 FAM182BQ5T319 152 aa13.61□□□□□ -0.23
CUX1-204ENST00000393824 ITPRIPQ8IWB1 547 aa13.61□□□□□ -0.23
CUX1-204ENST00000393824 NAP1L2Q9ULW6 460 aaPredicted RBP13.61□□□□□ -0.23
CUX1-204ENST00000393824 NKX1-1Q15270 411 aaPredicted RBP13.6□□□□□ -0.23
CUX1-204ENST00000393824 MARCH10Q8NA82 808 aaPredicted RBP13.6□□□□□ -0.23
CUX1-204ENST00000393824 NECTIN2Q92692 538 aa13.6□□□□□ -0.23
CUX1-204ENST00000393824 RBSNQ9H1K0 784 aa13.6□□□□□ -0.23
CUX1-204ENST00000393824 TOGARAM1Q9Y4F4 1720 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 CCDC94Q9BW85 323 aaPredicted RBP13.59□□□□□ -0.23
CUX1-204ENST00000393824 SCN11AQ9UI33 1791 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 EXOC5O00471 708 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 GTF2E1P29083 439 aaPredicted RBP13.59□□□□□ -0.23
CUX1-204ENST00000393824 EIF4A1P60842 406 aaKnown RBP13.59□□□□□ -0.23
CUX1-204ENST00000393824 DMTNQ08495 405 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 DDB1Q16531 1140 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 BARGINQ6ZT62 677 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 GLI3P10071 1580 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 PLEKHG2Q9H7P9 1386 aa13.59□□□□□ -0.23
CUX1-204ENST00000393824 TNS2Q63HR2 1409 aa13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 103.5 ms