RNA–Protein interactions for RNA: ENST00000392770.6

SCN3B-202, Transcript of sodium voltage-gated channel beta subunit 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SCN3B, Length 6,061 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN3B-202ENST00000392770 TSPYL6Q8N831 410 aa19.64■□□□□ 0.73
SCN3B-202ENST00000392770 JARID2Q92833 1246 aaPredicted RBP19.64■□□□□ 0.73
SCN3B-202ENST00000392770 TSHZ3Q63HK5 1081 aa19.64■□□□□ 0.73
SCN3B-202ENST00000392770 ABCF2Q9UG63 623 aa19.64■□□□□ 0.73
SCN3B-202ENST00000392770 CCDC43Q96MW1 224 aaKnown RBP19.64■□□□□ 0.73
SCN3B-202ENST00000392770 PPP1R1BQ9UD71 204 aaPredicted RBP19.64■□□□□ 0.73
SCN3B-202ENST00000392770 PDE4CQ08493 712 aa19.63■□□□□ 0.73
SCN3B-202ENST00000392770 CCDC39Q9UFE4 941 aa19.63■□□□□ 0.73
SCN3B-202ENST00000392770 KRT85P78386 507 aa19.63■□□□□ 0.73
SCN3B-202ENST00000392770 ATP2B2Q01814 1243 aa19.63■□□□□ 0.73
SCN3B-202ENST00000392770 UBE3BQ7Z3V4 1068 aa19.63■□□□□ 0.73
SCN3B-202ENST00000392770 MAP3K19Q56UN5 1328 aa19.63■□□□□ 0.73
SCN3B-202ENST00000392770 CCAR2Q8N163 923 aaKnown RBP19.63■□□□□ 0.73
SCN3B-202ENST00000392770 UBAC1Q9BSL1 405 aa19.63■□□□□ 0.73
SCN3B-202ENST00000392770 RBM5P52756 815 aaKnown RBP eCLIP19.62■□□□□ 0.73
SCN3B-202ENST00000392770 HSPA2P54652 639 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 EVI5LQ96CN4 794 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 UPF3BQ9BZI7 483 aaKnown RBP19.62■□□□□ 0.73
SCN3B-202ENST00000392770 CDKL5O76039 1030 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 CAVIN4Q5BKX8 364 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 ANKRD13DQ6ZTN6 518 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 CEP89Q96ST8 783 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 SLC5A1P13866 664 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 CCDC83Q8IWF9 413 aa19.62■□□□□ 0.73
SCN3B-202ENST00000392770 GCP02774 474 aa19.61■□□□□ 0.73
SCN3B-202ENST00000392770 ECHDC1Q9NTX5 307 aa19.61■□□□□ 0.73
SCN3B-202ENST00000392770 SHROOM2Q13796 1616 aa19.61■□□□□ 0.73
SCN3B-202ENST00000392770 PTPRTO14522 1441 aa19.61■□□□□ 0.73
SCN3B-202ENST00000392770 VAMP4O75379 141 aa19.61■□□□□ 0.73
SCN3B-202ENST00000392770 U3KPZ7 1027 aaPredicted RBP19.61■□□□□ 0.73
SCN3B-202ENST00000392770 XAGE3Q8WTP9 111 aa19.61■□□□□ 0.73
SCN3B-202ENST00000392770 MCM4P33991 863 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 ME1P48163 572 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 KDM5CP41229 1560 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 IL13P35225 146 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 KRT24Q2M2I5 525 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 HOMER1Q86YM7 354 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 IP6K1Q92551 441 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 IPO7O95373 1038 aaKnown RBP19.6■□□□□ 0.73
SCN3B-202ENST00000392770 JMYQ8N9B5 988 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 TMEM2Q9UHN6 1383 aa19.6■□□□□ 0.73
SCN3B-202ENST00000392770 SPATA32Q96LK8 384 aa19.59■□□□□ 0.73
SCN3B-202ENST00000392770 DDX11Q96FC9 970 aa19.59■□□□□ 0.73
SCN3B-202ENST00000392770 UGGT1Q9NYU2 1555 aa19.59■□□□□ 0.73
SCN3B-202ENST00000392770 RLBP1P12271 317 aa19.59■□□□□ 0.73
SCN3B-202ENST00000392770 ERCC6L2Q5T890 1561 aa19.59■□□□□ 0.73
SCN3B-202ENST00000392770 TNMDQ9H2S6 317 aa19.59■□□□□ 0.73
SCN3B-202ENST00000392770 TBC1D2Q9BYX2 928 aa19.58■□□□□ 0.73
SCN3B-202ENST00000392770 TRIM5Q9C035 493 aa19.58■□□□□ 0.73
SCN3B-202ENST00000392770 HECW2Q9P2P5 1572 aa19.58■□□□□ 0.73
SCN3B-202ENST00000392770 SBNO1A3KN83 1393 aa19.58■□□□□ 0.72
SCN3B-202ENST00000392770 TXLNAP40222 546 aa19.58■□□□□ 0.72
SCN3B-202ENST00000392770 COPS6Q7L5N1 327 aa19.58■□□□□ 0.72
SCN3B-202ENST00000392770 ANKIB1Q9P2G1 1089 aa19.58■□□□□ 0.72
SCN3B-202ENST00000392770 A0A0U1RQG5 324 aaPredicted RBP19.58■□□□□ 0.72
SCN3B-202ENST00000392770 ANKRD44Q8N8A2 993 aa19.58■□□□□ 0.72
SCN3B-202ENST00000392770 RHPN1Q8TCX5 695 aa19.58■□□□□ 0.72
SCN3B-202ENST00000392770 TSPOAP1O95153 1857 aa19.57■□□□□ 0.72
SCN3B-202ENST00000392770 CDC42BPAQ5VT25 1732 aa19.57■□□□□ 0.72
SCN3B-202ENST00000392770 SPATA31E1Q6ZUB1 1445 aa19.57■□□□□ 0.72
SCN3B-202ENST00000392770 CDK5RAP3Q96JB5 506 aa19.57■□□□□ 0.72
SCN3B-202ENST00000392770 ADCY10Q96PN6 1610 aa19.57■□□□□ 0.72
SCN3B-202ENST00000392770 PIP4K2AP48426 406 aaPredicted RBP19.57■□□□□ 0.72
SCN3B-202ENST00000392770 KSR2Q6VAB6 950 aa19.57■□□□□ 0.72
SCN3B-202ENST00000392770 PDILTQ8N807 584 aa19.57■□□□□ 0.72
SCN3B-202ENST00000392770 GOLGA6L1Q8N7Z2 621 aa19.56■□□□□ 0.72
SCN3B-202ENST00000392770 SMC2O95347 1197 aa19.56■□□□□ 0.72
SCN3B-202ENST00000392770 GOLIM4O00461 696 aa19.56■□□□□ 0.72
SCN3B-202ENST00000392770 MAP3K12Q12852 859 aa19.56■□□□□ 0.72
SCN3B-202ENST00000392770 NFATC2IPQ8NCF5 419 aa19.56■□□□□ 0.72
SCN3B-202ENST00000392770 BLMP54132 1417 aaPredicted RBP19.56■□□□□ 0.72
SCN3B-202ENST00000392770 IL2RBP14784 551 aa19.56■□□□□ 0.72
SCN3B-202ENST00000392770 CCDC192P0DO97 292 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 HMGB2P26583 209 aaKnown RBP19.55■□□□□ 0.72
SCN3B-202ENST00000392770 ATP8B2P98198 1209 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 KIF1BO60333 1816 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 FAM43AQ8N2R8 423 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 PDZRN4Q6ZMN7 1036 aaPredicted RBP19.55■□□□□ 0.72
SCN3B-202ENST00000392770 CFAP45Q9UL16 551 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 RNMTO43148 476 aaKnown RBP19.55■□□□□ 0.72
SCN3B-202ENST00000392770 ALDH1L1O75891 902 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 CCDC173Q0VFZ6 552 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 ACSBG1Q96GR2 724 aa19.55■□□□□ 0.72
SCN3B-202ENST00000392770 LDHAL6AQ6ZMR3 332 aa19.54■□□□□ 0.72
SCN3B-202ENST00000392770 NAPBQ9H115 298 aa19.54■□□□□ 0.72
SCN3B-202ENST00000392770 TBC1D32Q96NH3 1257 aa19.54■□□□□ 0.72
SCN3B-202ENST00000392770 MINDY4BA8MYZ0 360 aa19.54■□□□□ 0.72
SCN3B-202ENST00000392770 GRM8O00222 908 aa19.54■□□□□ 0.72
SCN3B-202ENST00000392770 WASF1Q92558 559 aa19.54■□□□□ 0.72
SCN3B-202ENST00000392770 SDSP20132 328 aa19.53■□□□□ 0.72
SCN3B-202ENST00000392770 NOL7Q9UMY1 257 aaKnown RBP19.53■□□□□ 0.72
SCN3B-202ENST00000392770 SH2B1Q9NRF2 756 aaPredicted RBP19.53■□□□□ 0.72
SCN3B-202ENST00000392770 SOGA3Q5TF21 947 aa19.53■□□□□ 0.72
SCN3B-202ENST00000392770 USP5P45974 858 aa19.53■□□□□ 0.72
SCN3B-202ENST00000392770 ZSCAN29Q8IWY8 852 aaPredicted RBP19.53■□□□□ 0.72
SCN3B-202ENST00000392770 RPGRQ92834 1020 aaKnown RBP19.53■□□□□ 0.72
SCN3B-202ENST00000392770 MLH3Q9UHC1 1453 aa19.53■□□□□ 0.72
SCN3B-202ENST00000392770 HMGB1P09429 215 aaKnown RBP19.52■□□□□ 0.72
SCN3B-202ENST00000392770 MYOM2P54296 1465 aa19.52■□□□□ 0.72
SCN3B-202ENST00000392770 PIBF1Q8WXW3 757 aa19.52■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms