RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 OVOS2A0A0J9YW53 1432 aa22.31■■□□□ 1.16
CCDC3-201ENST00000378825 OVOS2Q6IE36 1432 aa22.31■■□□□ 1.16
CCDC3-201ENST00000378825 SYAP1Q96A49 352 aaPredicted RBP22.3■■□□□ 1.16
CCDC3-201ENST00000378825 MAP7D2Q96T17 732 aa22.3■■□□□ 1.16
CCDC3-201ENST00000378825 FLIIQ13045 1269 aa22.3■■□□□ 1.16
CCDC3-201ENST00000378825 RASEFQ8IZ41 740 aa22.3■■□□□ 1.16
CCDC3-201ENST00000378825 ZNF710Q8N1W2 664 aa22.3■■□□□ 1.16
CCDC3-201ENST00000378825 ANAPC15P60006 121 aa22.3■■□□□ 1.16
CCDC3-201ENST00000378825 FIBPO43427 364 aa22.29■■□□□ 1.16
CCDC3-201ENST00000378825 ATP8B2P98198 1209 aa22.29■■□□□ 1.16
CCDC3-201ENST00000378825 WDR33Q9C0J8 1336 aaKnown RBP22.29■■□□□ 1.16
CCDC3-201ENST00000378825 AP5Z1O43299 807 aa22.29■■□□□ 1.16
CCDC3-201ENST00000378825 NOLC1Q14978 699 aaKnown RBP eCLIP22.29■■□□□ 1.16
CCDC3-201ENST00000378825 PEAK1Q9H792 1746 aa22.28■■□□□ 1.16
CCDC3-201ENST00000378825 LARGE1O95461 756 aa22.28■■□□□ 1.16
CCDC3-201ENST00000378825 GIMAP6Q6P9H5 292 aa22.28■■□□□ 1.16
CCDC3-201ENST00000378825 MYRIPQ8NFW9 859 aa22.27■■□□□ 1.16
CCDC3-201ENST00000378825 DDX54Q8TDD1 881 aaKnown RBP22.27■■□□□ 1.16
CCDC3-201ENST00000378825 RTF1Q92541 710 aaKnown RBP22.27■■□□□ 1.16
CCDC3-201ENST00000378825 HSPA4P34932 840 aa22.27■■□□□ 1.16
CCDC3-201ENST00000378825 PIBF1Q8WXW3 757 aa22.26■■□□□ 1.15
CCDC3-201ENST00000378825 STK31Q9BXU1 1019 aa22.26■■□□□ 1.15
CCDC3-201ENST00000378825 NRKQ7Z2Y5 1582 aa22.26■■□□□ 1.15
CCDC3-201ENST00000378825 AK2P54819 239 aa22.26■■□□□ 1.15
CCDC3-201ENST00000378825 STAP2Q9UGK3 403 aa22.26■■□□□ 1.15
CCDC3-201ENST00000378825 SNX14Q9Y5W7 946 aa22.26■■□□□ 1.15
CCDC3-201ENST00000378825 SYT1P21579 422 aa22.25■■□□□ 1.15
CCDC3-201ENST00000378825 AMPHP49418 695 aa22.25■■□□□ 1.15
CCDC3-201ENST00000378825 RUFY3Q7L099 469 aa22.25■■□□□ 1.15
CCDC3-201ENST00000378825 SPG7Q9UQ90 795 aa22.25■■□□□ 1.15
CCDC3-201ENST00000378825 CCDC183Q5T5S1 534 aa22.25■■□□□ 1.15
CCDC3-201ENST00000378825 USP44Q9H0E7 712 aa22.25■■□□□ 1.15
CCDC3-201ENST00000378825 RBM33Q96EV2 1170 aaKnown RBP22.24■■□□□ 1.15
CCDC3-201ENST00000378825 PHF14O94880 888 aa22.24■■□□□ 1.15
CCDC3-201ENST00000378825 ZSCAN22P10073 491 aaPredicted RBP22.23■■□□□ 1.15
CCDC3-201ENST00000378825 LTV1Q96GA3 475 aaPredicted RBP22.23■■□□□ 1.15
CCDC3-201ENST00000378825 EYA1Q99502 592 aa22.23■■□□□ 1.15
CCDC3-201ENST00000378825 GNAI3P08754 354 aa22.22■■□□□ 1.15
CCDC3-201ENST00000378825 NLRP6P59044 892 aa22.22■■□□□ 1.15
CCDC3-201ENST00000378825 STX6O43752 255 aa22.22■■□□□ 1.15
CCDC3-201ENST00000378825 TTC14Q96N46 770 aa22.22■■□□□ 1.15
CCDC3-201ENST00000378825 PHAXQ9H814 394 aaKnown RBP22.22■■□□□ 1.15
CCDC3-201ENST00000378825 ZHX1Q9UKY1 873 aaPredicted RBP22.22■■□□□ 1.15
CCDC3-201ENST00000378825 SURF6O75683 361 aaKnown RBP22.22■■□□□ 1.15
CCDC3-201ENST00000378825 CWC27Q6UX04 472 aaKnown RBP22.22■■□□□ 1.15
CCDC3-201ENST00000378825 SPC24Q8NBT2 197 aa22.22■■□□□ 1.15
CCDC3-201ENST00000378825 USP31Q70CQ4 1352 aa22.21■■□□□ 1.15
CCDC3-201ENST00000378825 DNM1Q05193 864 aaKnown RBP22.21■■□□□ 1.15
CCDC3-201ENST00000378825 COL9A3Q14050 684 aaPredicted RBP22.21■■□□□ 1.15
CCDC3-201ENST00000378825 PI4K2BQ8TCG2 481 aa22.21■■□□□ 1.15
CCDC3-201ENST00000378825 PYCARDQ9ULZ3 195 aa22.21■■□□□ 1.15
CCDC3-201ENST00000378825 CHMP3Q9Y3E7 222 aa22.21■■□□□ 1.15
CCDC3-201ENST00000378825 PLEKHG5O94827 1062 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 KCNA6P17658 529 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 C14orf37Q86TY3 774 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 KCNF1Q9H3M0 494 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 SSH2Q76I76 1423 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 TOPAZ1Q8N9V7 1692 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 SGSM2O43147 1006 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 PPP1R42Q7Z4L9 355 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 CCDC83Q8IWF9 413 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 TMEM87AQ8NBN3 555 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 TBX22Q9Y458 520 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 RAD50Q92878 1312 aa22.2■■□□□ 1.14
CCDC3-201ENST00000378825 KDM4AO75164 1064 aa22.19■■□□□ 1.14
CCDC3-201ENST00000378825 FAM184AQ8NB25 1140 aa22.19■■□□□ 1.14
CCDC3-201ENST00000378825 CCDC94Q9BW85 323 aaPredicted RBP22.19■■□□□ 1.14
CCDC3-201ENST00000378825 LSG1Q9H089 658 aaKnown RBP22.19■■□□□ 1.14
CCDC3-201ENST00000378825 F13A1P00488 732 aa22.19■■□□□ 1.14
CCDC3-201ENST00000378825 UBTFL1P0CB47 393 aaPredicted RBP22.19■■□□□ 1.14
CCDC3-201ENST00000378825 IL17RAQ96F46 866 aa22.19■■□□□ 1.14
CCDC3-201ENST00000378825 SOS1Q07889 1333 aaPredicted RBP22.18■■□□□ 1.14
CCDC3-201ENST00000378825 UBE2HP62256 183 aa22.18■■□□□ 1.14
CCDC3-201ENST00000378825 CBX1P83916 185 aa22.18■■□□□ 1.14
CCDC3-201ENST00000378825 UVSSAQ2YD98 709 aa22.18■■□□□ 1.14
CCDC3-201ENST00000378825 ADCK5Q3MIX3 580 aa22.18■■□□□ 1.14
CCDC3-201ENST00000378825 FUCA2Q9BTY2 467 aa22.18■■□□□ 1.14
CCDC3-201ENST00000378825 CASTP20810 708 aaKnown RBP22.17■■□□□ 1.14
CCDC3-201ENST00000378825 CEP170BQ9Y4F5 1589 aaPredicted RBP22.17■■□□□ 1.14
CCDC3-201ENST00000378825 CCDC30Q5VVM6 783 aa22.17■■□□□ 1.14
CCDC3-201ENST00000378825 FAM173BQ6P4H8 233 aa22.17■■□□□ 1.14
CCDC3-201ENST00000378825 SMC3Q9UQE7 1217 aa22.17■■□□□ 1.14
CCDC3-201ENST00000378825 RGPD8O14715 1765 aaPredicted RBP22.17■■□□□ 1.14
CCDC3-201ENST00000378825 RGPD1P0DJD0 1748 aa22.17■■□□□ 1.14
CCDC3-201ENST00000378825 FLT4P35916 1363 aa22.17■■□□□ 1.14
CCDC3-201ENST00000378825 TTC21AQ8NDW8 1320 aa22.17■■□□□ 1.14
CCDC3-201ENST00000378825 MTERF4Q7Z6M4 381 aaKnown RBP22.16■■□□□ 1.14
CCDC3-201ENST00000378825 RHPN1Q8TCX5 695 aa22.16■■□□□ 1.14
CCDC3-201ENST00000378825 ATP2B3Q16720 1220 aa22.16■■□□□ 1.14
CCDC3-201ENST00000378825 THEMISQ8N1K5 641 aaPredicted RBP22.16■■□□□ 1.14
CCDC3-201ENST00000378825 LIMCH1Q9UPQ0 1083 aa22.16■■□□□ 1.14
CCDC3-201ENST00000378825 NBPF7P0C2Y1 421 aaPredicted RBP22.15■■□□□ 1.14
CCDC3-201ENST00000378825 GJB2P29033 226 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 PTH1RQ03431 593 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 SMAP1Q8IYB5 467 aaPredicted RBP22.15■■□□□ 1.14
CCDC3-201ENST00000378825 USHBP1Q8N6Y0 703 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 SSH3Q8TE77 659 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 XRN1Q8IZH2 1706 aaKnown RBP22.15■■□□□ 1.14
CCDC3-201ENST00000378825 SBNO1A3KN83 1393 aa22.15■■□□□ 1.14
CCDC3-201ENST00000378825 ST3GAL1Q11201 340 aa22.15■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms