RNA–Protein interactions for RNA: ENST00000378679.7

SHROOM1-203, Transcript of shroom family member 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SHROOM1, Length 4,019 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1-203ENST00000378679 HSP90AB3PQ58FF7 597 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 C16orf71Q8IYS4 520 aaPredicted RBP16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 ECHDC1Q9NTX5 307 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 BCORL1Q5H9F3 1711 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 TRPM1Q7Z4N2 1603 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 CWF19L2Q2TBE0 894 aaKnown RBP16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 DDX24Q9GZR7 859 aaKnown RBP eCLIP16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 CDK11BP21127 795 aaKnown RBP16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 ATP8B2P98198 1209 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 TRIM29Q14134 588 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 ACSBG1Q96GR2 724 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 ALDH1L1O75891 902 aa16.99■□□□□ 0.31
SHROOM1-203ENST00000378679 CEP85Q6P2H3 762 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 RASSF8Q8NHQ8 419 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 CCDC34Q96HJ3 373 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 GNL3LQ9NVN8 582 aaKnown RBP16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 ZNF652Q9Y2D9 606 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 AATKQ6ZMQ8 1374 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 DDB1Q16531 1140 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 IL17REQ8NFR9 667 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 E9PCH4 1651 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 NPHP4O75161 1426 aaPredicted RBP16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 SPHKAPQ2M3C7 1700 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 ATP7BP35670 1465 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 IGHMBP2P38935 993 aaKnown RBP16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 ZNF790Q6PG37 636 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 JAKMIP1Q96N16 626 aaKnown RBP16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 DCTPP1Q9H773 170 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 ZNF521Q96K83 1311 aa16.98■□□□□ 0.31
SHROOM1-203ENST00000378679 IDH1O75874 414 aaKnown RBP16.97■□□□□ 0.31
SHROOM1-203ENST00000378679 BLOC1S2Q6QNY1 142 aa16.97■□□□□ 0.31
SHROOM1-203ENST00000378679 USP6P35125 1406 aa16.97■□□□□ 0.31
SHROOM1-203ENST00000378679 TTC22Q5TAA0 569 aa16.97■□□□□ 0.31
SHROOM1-203ENST00000378679 C8orf37Q96NL8 207 aa16.97■□□□□ 0.31
SHROOM1-203ENST00000378679 DDX21Q9NR30 783 aaKnown RBP eCLIP16.97■□□□□ 0.31
SHROOM1-203ENST00000378679 LMTK3Q96Q04 1460 aa16.97■□□□□ 0.31
SHROOM1-203ENST00000378679 RRP12Q5JTH9 1297 aaKnown RBP16.96■□□□□ 0.31
SHROOM1-203ENST00000378679 TRMT2AQ8IZ69 625 aaKnown RBP16.96■□□□□ 0.31
SHROOM1-203ENST00000378679 RAD21O60216 631 aa16.96■□□□□ 0.31
SHROOM1-203ENST00000378679 IFIT1P09914 478 aaKnown RBP16.96■□□□□ 0.31
SHROOM1-203ENST00000378679 BICD2Q8TD16 824 aa16.96■□□□□ 0.31
SHROOM1-203ENST00000378679 SDSP20132 328 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 PDE1AP54750 535 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 BABAM1Q9NWV8 329 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 AKAP2Q9Y2D5 859 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 LDHAL6AQ6ZMR3 332 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 ARHGEF10O15013 1369 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 TRAK2O60296 914 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 ZPR1O75312 459 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 STK3Q13188 491 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 LMTK2Q8IWU2 1503 aa16.95■□□□□ 0.3
SHROOM1-203ENST00000378679 LMBR1LQ6UX01 489 aa16.94■□□□□ 0.3
SHROOM1-203ENST00000378679 TBC1D2Q9BYX2 928 aa16.94■□□□□ 0.3
SHROOM1-203ENST00000378679 PA2G4Q9UQ80 394 aaKnown RBP16.94■□□□□ 0.3
SHROOM1-203ENST00000378679 INO80Q9ULG1 1556 aaPredicted RBP16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 C8orf34Q49A92 452 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 ABCF2Q9UG63 623 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 PDCP20941 246 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 PRPF40BQ6NWY9 871 aaKnown RBP16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 TBC1D32Q96NH3 1257 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 DIP2CQ9Y2E4 1556 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 SOS1Q07889 1333 aaPredicted RBP16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 RBM10P98175 930 aaKnown RBP16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 ARHGEF25Q86VW2 580 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 STK11IPQ8N1F8 1099 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 KLHL34Q8N239 644 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 ADGRB3O60242 1522 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 KDM4AO75164 1064 aa16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 CWC22Q9HCG8 908 aaKnown RBP16.93■□□□□ 0.3
SHROOM1-203ENST00000378679 ANKRD18BA2A2Z9 1011 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 DHX16O60231 1041 aaKnown RBP16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 ZSCAN25Q6NSZ9 544 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 LRP2BPQ9P2M1 347 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 KIAA2012Q0VF49 1180 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 DNAJC5Q9H3Z4 198 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 RIMBP3CA6NJZ7 1639 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 RIMBP3BA6NNM3 1639 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 RIMBP3Q9UFD9 1639 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 PCDH11XQ9BZA7 1347 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 PCDH11YQ9BZA8 1340 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 SART3Q15020 963 aaKnown RBP16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 SNRKQ9NRH2 765 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 PDRG1Q9NUG6 133 aa16.92■□□□□ 0.3
SHROOM1-203ENST00000378679 PRPF40AO75400 957 aaKnown RBP16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 HOXB7P09629 217 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 CASTP20810 708 aaKnown RBP16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 ZNF496Q96IT1 587 aaPredicted RBP16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 PHF23Q9BUL5 403 aaPredicted RBP16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 USP19O94966 1318 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 KCNQ3O43525 872 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 MTMR7Q9Y216 660 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 CEP152O94986 1710 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 EIF4A1P60842 406 aaKnown RBP16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 TRIM34Q9BYJ4 488 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 NACAP1Q9BZK3 213 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 MADDQ8WXG6 1647 aa16.91■□□□□ 0.3
SHROOM1-203ENST00000378679 MARCH6O60337 910 aa16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 ANKRD1Q15327 319 aa16.9■□□□□ 0.3
SHROOM1-203ENST00000378679 FAM43AQ8N2R8 423 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 106.9 ms