RNA–Protein interactions for RNA: ENST00000377575.2

HMGN4-201, Transcript of high mobility group nucleosomal binding domain 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGN4, Length 1,225 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN4-201ENST00000377575 GOLGB1Q14789 3259 aaKnown RBP22.28■■□□□ 1.16
HMGN4-201ENST00000377575 ZBTB1Q9Y2K1 713 aa22.27■■□□□ 1.16
HMGN4-201ENST00000377575 KDM3BQ7LBC6 1761 aa22.27■■□□□ 1.16
HMGN4-201ENST00000377575 YY1P25490 414 aa22.26■■□□□ 1.15
HMGN4-201ENST00000377575 DCTN1Q14203 1278 aa22.26■■□□□ 1.15
HMGN4-201ENST00000377575 NFE2L2Q16236 605 aa22.26■■□□□ 1.15
HMGN4-201ENST00000377575 PELP1Q8IZL8 1130 aaKnown RBP22.26■■□□□ 1.15
HMGN4-201ENST00000377575 LAMB4A4D0S4 1761 aa22.25■■□□□ 1.15
HMGN4-201ENST00000377575 ZPR1O75312 459 aa22.25■■□□□ 1.15
HMGN4-201ENST00000377575 PRKRIP1Q9H875 184 aaPredicted RBP22.25■■□□□ 1.15
HMGN4-201ENST00000377575 SCN7AQ01118 1682 aa22.24■■□□□ 1.15
HMGN4-201ENST00000377575 SRP68Q9UHB9 627 aaKnown RBP22.24■■□□□ 1.15
HMGN4-201ENST00000377575 PARP3Q9Y6F1 533 aa22.24■■□□□ 1.15
HMGN4-201ENST00000377575 C10orf71Q711Q0 1435 aa22.23■■□□□ 1.15
HMGN4-201ENST00000377575 KIAA1551Q9HCM1 1747 aa22.23■■□□□ 1.15
HMGN4-201ENST00000377575 KCNQ3O43525 872 aa22.22■■□□□ 1.15
HMGN4-201ENST00000377575 CANXP27824 592 aaKnown RBP22.22■■□□□ 1.15
HMGN4-201ENST00000377575 WDR43Q15061 677 aaKnown RBP eCLIP22.22■■□□□ 1.15
HMGN4-201ENST00000377575 N4BP2Q86UW6 1770 aaPredicted RBP22.21■■□□□ 1.15
HMGN4-201ENST00000377575 TAF7Q15545 349 aaPredicted RBP22.21■■□□□ 1.15
HMGN4-201ENST00000377575 NARFQ9UHQ1 456 aa22.21■■□□□ 1.15
HMGN4-201ENST00000377575 A0A087WZG4 1122 aa22.2■■□□□ 1.14
HMGN4-201ENST00000377575 FKBP8Q14318 412 aa22.2■■□□□ 1.14
HMGN4-201ENST00000377575 USPL1Q5W0Q7 1092 aa22.2■■□□□ 1.14
HMGN4-201ENST00000377575 PNISRQ8TF01 805 aaKnown RBP22.2■■□□□ 1.14
HMGN4-201ENST00000377575 BCORQ6W2J9 1755 aa22.2■■□□□ 1.14
HMGN4-201ENST00000377575 AFDNP55196 1824 aaKnown RBP22.19■■□□□ 1.14
HMGN4-201ENST00000377575 PXDNLA1KZ92 1463 aa22.18■■□□□ 1.14
HMGN4-201ENST00000377575 GRIN3BO60391 1043 aa22.18■■□□□ 1.14
HMGN4-201ENST00000377575 SNRPA1P09661 255 aaKnown RBP22.18■■□□□ 1.14
HMGN4-201ENST00000377575 EIF5P55010 431 aaKnown RBP22.18■■□□□ 1.14
HMGN4-201ENST00000377575 LMOD3Q0VAK6 560 aa22.18■■□□□ 1.14
HMGN4-201ENST00000377575 NPM2Q86SE8 214 aaKnown RBP22.18■■□□□ 1.14
HMGN4-201ENST00000377575 YBX3P16989 372 aaKnown RBP eCLIP22.17■■□□□ 1.14
HMGN4-201ENST00000377575 IL6STP40189 918 aaPredicted RBP22.17■■□□□ 1.14
HMGN4-201ENST00000377575 BRCA1P38398 1863 aaKnown RBP22.17■■□□□ 1.14
HMGN4-201ENST00000377575 NRXN2Q9P2S2 1712 aa22.17■■□□□ 1.14
HMGN4-201ENST00000377575 ZNF330Q9Y3S2 320 aaPredicted RBP22.16■■□□□ 1.14
HMGN4-201ENST00000377575 ZNF316A6NFI3 1004 aaPredicted RBP22.15■■□□□ 1.14
HMGN4-201ENST00000377575 RIPK4P57078 832 aa22.15■■□□□ 1.14
HMGN4-201ENST00000377575 TGFB2P61812 414 aa22.15■■□□□ 1.14
HMGN4-201ENST00000377575 DDR1Q08345 913 aa22.15■■□□□ 1.14
HMGN4-201ENST00000377575 POLRMTO00411 1230 aaKnown RBP22.14■■□□□ 1.13
HMGN4-201ENST00000377575 A1BGP04217 495 aa22.14■■□□□ 1.13
HMGN4-201ENST00000377575 TMPOP42166 694 aaKnown RBP22.14■■□□□ 1.13
HMGN4-201ENST00000377575 RUNDC1Q96C34 613 aa22.14■■□□□ 1.13
HMGN4-201ENST00000377575 THUMPD2Q9BTF0 503 aaKnown RBP22.14■■□□□ 1.13
HMGN4-201ENST00000377575 TM4SF1P30408 202 aa22.13■■□□□ 1.13
HMGN4-201ENST00000377575 CCDC146Q8IYE0 955 aa22.13■■□□□ 1.13
HMGN4-201ENST00000377575 MIS18AQ9NYP9 233 aa22.13■■□□□ 1.13
HMGN4-201ENST00000377575 USP16Q9Y5T5 823 aa22.13■■□□□ 1.13
HMGN4-201ENST00000377575 PRAMEF22A3QJZ6 481 aa22.12■■□□□ 1.13
HMGN4-201ENST00000377575 NFIXQ14938 502 aa22.11■■□□□ 1.13
HMGN4-201ENST00000377575 BCL2L12Q9HB09 334 aa22.11■■□□□ 1.13
HMGN4-201ENST00000377575 ADAMTS8Q9UP79 889 aa22.11■■□□□ 1.13
HMGN4-201ENST00000377575 ARFGEF1Q9Y6D6 1849 aa22.1■■□□□ 1.13
HMGN4-201ENST00000377575 TSPYL4Q9UJ04 414 aa22.09■■□□□ 1.13
HMGN4-201ENST00000377575 WWC3Q9ULE0 1092 aa22.09■■□□□ 1.13
HMGN4-201ENST00000377575 TBC1D2BQ9UPU7 963 aa22.09■■□□□ 1.13
HMGN4-201ENST00000377575 DLEC1Q9Y238 1755 aa22.09■■□□□ 1.13
HMGN4-201ENST00000377575 EIF4A1P60842 406 aaKnown RBP22.08■■□□□ 1.13
HMGN4-201ENST00000377575 DZIP3Q86Y13 1208 aaKnown RBP22.08■■□□□ 1.13
HMGN4-201ENST00000377575 BABAM1Q9NWV8 329 aa22.08■■□□□ 1.13
HMGN4-201ENST00000377575 RRP7AQ9Y3A4 280 aaKnown RBP22.08■■□□□ 1.13
HMGN4-201ENST00000377575 A0A0G2JLW4 131 aa22.07■■□□□ 1.12
HMGN4-201ENST00000377575 GIGYF1O75420 1035 aaPredicted RBP22.07■■□□□ 1.12
HMGN4-201ENST00000377575 DPEP1P16444 411 aa22.07■■□□□ 1.12
HMGN4-201ENST00000377575 PIP4K2AP48426 406 aaPredicted RBP22.07■■□□□ 1.12
HMGN4-201ENST00000377575 NEUROD2Q15784 382 aa22.07■■□□□ 1.12
HMGN4-201ENST00000377575 CARMIL3Q8ND23 1372 aa22.07■■□□□ 1.12
HMGN4-201ENST00000377575 CAMTA2O94983 1202 aa22.06■■□□□ 1.12
HMGN4-201ENST00000377575 SERPINB2P05120 415 aa22.06■■□□□ 1.12
HMGN4-201ENST00000377575 TBC1D9BQ66K14 1250 aa22.05■■□□□ 1.12
HMGN4-201ENST00000377575 BICDL1Q6ZP65 573 aa22.05■■□□□ 1.12
HMGN4-201ENST00000377575 ZNF652Q9Y2D9 606 aa22.05■■□□□ 1.12
HMGN4-201ENST00000377575 BCS1LQ9Y276 419 aa22.04■■□□□ 1.12
HMGN4-201ENST00000377575 ANKRD31Q8N7Z5 1873 aa22.03■■□□□ 1.12
HMGN4-201ENST00000377575 NBPF26B4DH59 902 aa22.03■■□□□ 1.12
HMGN4-201ENST00000377575 NBPF10Q6P3W6 841 aaKnown RBP22.03■■□□□ 1.12
HMGN4-201ENST00000377575 NBPF15Q8N660 670 aa22.03■■□□□ 1.12
HMGN4-201ENST00000377575 ZNF784Q8NCA9 323 aaPredicted RBP22.03■■□□□ 1.12
HMGN4-201ENST00000377575 RGL2O15211 777 aa22.02■■□□□ 1.12
HMGN4-201ENST00000377575 ANP32CO43423 234 aa22.02■■□□□ 1.12
HMGN4-201ENST00000377575 CLEC4GQ6UXB4 293 aa22.02■■□□□ 1.12
HMGN4-201ENST00000377575 SETDB2Q96T68 719 aa22.02■■□□□ 1.12
HMGN4-201ENST00000377575 PIM2Q9P1W9 311 aa22.02■■□□□ 1.12
HMGN4-201ENST00000377575 TRIM35Q9UPQ4 493 aa22.02■■□□□ 1.12
HMGN4-201ENST00000377575 ERBB4Q15303 1308 aa22.01■■□□□ 1.11
HMGN4-201ENST00000377575 NUP98P52948 1817 aa22.01■■□□□ 1.11
HMGN4-201ENST00000377575 KCNA3P22001 575 aa22■■□□□ 1.11
HMGN4-201ENST00000377575 NPHP1O15259 732 aa21.99■■□□□ 1.11
HMGN4-201ENST00000377575 CHRNA5P30532 468 aa21.99■■□□□ 1.11
HMGN4-201ENST00000377575 DALRD3Q5D0E6 543 aaKnown RBP21.99■■□□□ 1.11
HMGN4-201ENST00000377575 COL11A2P13942 1736 aaPredicted RBP21.99■■□□□ 1.11
HMGN4-201ENST00000377575 CNBD1Q8NA66 436 aa21.98■■□□□ 1.11
HMGN4-201ENST00000377575 APAF1O14727 1248 aa21.97■■□□□ 1.11
HMGN4-201ENST00000377575 KIF6Q6ZMV9 814 aa21.97■■□□□ 1.11
HMGN4-201ENST00000377575 PDZRN3Q9UPQ7 1066 aa21.97■■□□□ 1.11
HMGN4-201ENST00000377575 LAS1LQ9Y4W2 734 aaKnown RBP21.97■■□□□ 1.11
HMGN4-201ENST00000377575 CHL1O00533 1208 aa21.96■■□□□ 1.11
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms