RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 KLHL10Q6JEL2 608 aa13.38□□□□□ -0.27
VCL-202ENST00000372755 CCDC96Q2M329 555 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 CFTRP13569 1480 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 CCDC194A0A1B0GVG4 234 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 AMOTQ4VCS5 1084 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 NSD3Q9BZ95 1437 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 BAG4O95429 457 aaKnown RBP13.37□□□□□ -0.27
VCL-202ENST00000372755 CETN1Q12798 172 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 MYD88Q99836 296 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 TAOK3Q9H2K8 898 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 A0A087WZG4 1122 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 IFIT5Q13325 482 aaKnown RBP13.37□□□□□ -0.27
VCL-202ENST00000372755 DHX37Q8IY37 1157 aaKnown RBP13.37□□□□□ -0.27
VCL-202ENST00000372755 ANKIB1Q9P2G1 1089 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 ABCC11Q96J66 1382 aa13.37□□□□□ -0.27
VCL-202ENST00000372755 POTEB2H3BUK9 544 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 ZNF213O14771 459 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 NEMFO60524 1076 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 NUDT16Q96DE0 195 aaKnown RBP13.36□□□□□ -0.27
VCL-202ENST00000372755 NUP88Q99567 741 aaPredicted RBP13.36□□□□□ -0.27
VCL-202ENST00000372755 DAPK1P53355 1430 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 NF2P35240 595 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 ERICH4A6NGS2 130 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 MICALCLQ6ZW33 695 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 BOLA2Q9H3K6 86 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 GOPCQ9HD26 462 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 CLIP2Q9UDT6 1046 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 RRP9O43818 475 aaKnown RBP13.36□□□□□ -0.27
VCL-202ENST00000372755 CCDC12Q8WUD4 166 aaPredicted RBP13.36□□□□□ -0.27
VCL-202ENST00000372755 CTNNBL1Q8WYA6 563 aaPredicted RBP13.36□□□□□ -0.27
VCL-202ENST00000372755 ALS2CR12Q96Q35 445 aa13.36□□□□□ -0.27
VCL-202ENST00000372755 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.36□□□□□ -0.27
VCL-202ENST00000372755 RANBP6O60518 1105 aaKnown RBP13.35□□□□□ -0.27
VCL-202ENST00000372755 URI1O94763 535 aaPredicted RBP13.35□□□□□ -0.27
VCL-202ENST00000372755 PYM1Q9BRP8 204 aaKnown RBP13.35□□□□□ -0.27
VCL-202ENST00000372755 NAA15Q9BXJ9 866 aaKnown RBP13.35□□□□□ -0.27
VCL-202ENST00000372755 GOLGA8AA7E2F4 631 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 GOLGA8BA8MQT2 603 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 NLRP5P59047 1200 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 AMPD3Q01432 767 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 TAF7Q15545 349 aaPredicted RBP13.35□□□□□ -0.27
VCL-202ENST00000372755 ZC3H6P61129 1189 aaKnown RBP13.35□□□□□ -0.27
VCL-202ENST00000372755 CNNM3Q8NE01 707 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 GIMAP7Q8NHV1 300 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 CATIPQ7Z7H3 387 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 CCDC61Q9Y6R9 512 aa13.35□□□□□ -0.27
VCL-202ENST00000372755 TDRD12Q587J7 1177 aaKnown RBP13.35□□□□□ -0.27
VCL-202ENST00000372755 NBPF8Q3BBV2 869 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 STXBP4Q6ZWJ1 553 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 ANKRD18BA2A2Z9 1011 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 FERMT2Q96AC1 680 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 DDX19AQ9NUU7 478 aaKnown RBP13.34□□□□□ -0.27
VCL-202ENST00000372755 CGNQ9P2M7 1197 aaKnown RBP13.34□□□□□ -0.27
VCL-202ENST00000372755 LIMCH1Q9UPQ0 1083 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 CTNNA2P26232 953 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 GSDMDP57764 484 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 FAM114A1Q8IWE2 563 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 CALML4Q96GE6 196 aa13.34□□□□□ -0.27
VCL-202ENST00000372755 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP13.34□□□□□ -0.27
VCL-202ENST00000372755 IFIT3O14879 490 aaKnown RBP13.33□□□□□ -0.28
VCL-202ENST00000372755 MCM10Q7L590 875 aa13.33□□□□□ -0.28
VCL-202ENST00000372755 FAM107BQ9H098 131 aa13.33□□□□□ -0.28
VCL-202ENST00000372755 EFCAB5A4FU69 1503 aa13.33□□□□□ -0.28
VCL-202ENST00000372755 IL27Q8NEV9 243 aa13.33□□□□□ -0.28
VCL-202ENST00000372755 PPM1EQ8WY54 764 aa13.33□□□□□ -0.28
VCL-202ENST00000372755 TTC21AQ8NDW8 1320 aa13.33□□□□□ -0.28
VCL-202ENST00000372755 SMARCA5O60264 1052 aaPredicted RBP13.33□□□□□ -0.28
VCL-202ENST00000372755 HYPKQ9NX55 129 aa13.33□□□□□ -0.28
VCL-202ENST00000372755 MTIF2P46199 727 aaKnown RBP13.33□□□□□ -0.28
VCL-202ENST00000372755 XPCQ01831 940 aaPredicted RBP13.33□□□□□ -0.28
VCL-202ENST00000372755 TTF1Q15361 905 aaPredicted RBP13.33□□□□□ -0.28
VCL-202ENST00000372755 RPGRQ92834 1020 aaKnown RBP13.32□□□□□ -0.28
VCL-202ENST00000372755 MIS18AQ9NYP9 233 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 TRMT112Q9UI30 125 aaKnown RBP13.32□□□□□ -0.28
VCL-202ENST00000372755 GOLGA6L9A6NEM1 432 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 PTCD1O75127 700 aaKnown RBP13.32□□□□□ -0.28
VCL-202ENST00000372755 LRRC27Q9C0I9 530 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 TCP11L1Q9NUJ3 509 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 KIF5BP33176 963 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 PIP4K2BP78356 416 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 CHMP4BP1P59074 171 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 DNAAF4Q8WXU2 420 aa13.32□□□□□ -0.28
VCL-202ENST00000372755 MACROD2A1Z1Q3 448 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 CCDC40Q4G0X9 1142 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 STX1AQ16623 288 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 FSIP1Q8NA03 581 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 EVI5LQ96CN4 794 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 CEP63Q96MT8 703 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 PRKCSHP14314 528 aaPredicted RBP13.31□□□□□ -0.28
VCL-202ENST00000372755 KANK3Q6NY19 840 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 FERMT1Q9BQL6 677 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 TROQ12816 1431 aaPredicted RBP13.31□□□□□ -0.28
VCL-202ENST00000372755 LDHCP07864 332 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 GIGYF2Q6Y7W6 1299 aaKnown RBP13.31□□□□□ -0.28
VCL-202ENST00000372755 CCDC175P0C221 793 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 UBE4AQ14139 1066 aa13.31□□□□□ -0.28
VCL-202ENST00000372755 BCCIPQ9P287 314 aaKnown RBP eCLIP13.31□□□□□ -0.28
VCL-202ENST00000372755 SPECC1Q5M775 1068 aa13.3□□□□□ -0.28
VCL-202ENST00000372755 GUCY1B3Q02153 619 aa13.3□□□□□ -0.28
VCL-202ENST00000372755 PPM1FP49593 454 aaPredicted RBP13.3□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms