RNA–Protein interactions for RNA: ENST00000361654.8

CLIP1-203, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5 BASIC

Gene CLIP1, Length 5,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-203ENST00000361654 FKBP15Q5T1M5 1219 aa12.76□□□□□ -0.37
CLIP1-203ENST00000361654 MVPQ14764 893 aaKnown RBP12.76□□□□□ -0.37
CLIP1-203ENST00000361654 EHBP1L1Q8N3D4 1523 aa12.76□□□□□ -0.37
CLIP1-203ENST00000361654 SLC12A7Q9Y666 1083 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 ZNF710Q8N1W2 664 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 ZGPATQ8N5A5 531 aaKnown RBP12.75□□□□□ -0.37
CLIP1-203ENST00000361654 ZNF213O14771 459 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 LMOD1P29536 600 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-203ENST00000361654 CEBPAP49715 358 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-203ENST00000361654 CCDC152Q4G0S7 254 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 CAVIN1Q6NZI2 390 aaKnown RBP12.75□□□□□ -0.37
CLIP1-203ENST00000361654 SETDB2Q96T68 719 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 EFCAB5A4FU69 1503 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 NPHP3Q7Z494 1330 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 WASLO00401 505 aaPredicted RBP12.75□□□□□ -0.37
CLIP1-203ENST00000361654 BACH2Q9BYV9 841 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 CHD1LQ86WJ1 897 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 FERMT1Q9BQL6 677 aa12.75□□□□□ -0.37
CLIP1-203ENST00000361654 CWC15Q9P013 229 aaKnown RBP12.75□□□□□ -0.37
CLIP1-203ENST00000361654 MRE11P49959 708 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 LDHAL6AQ6ZMR3 332 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 DNAAF4Q8WXU2 420 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 C8orf37Q96NL8 207 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 CWC25Q9NXE8 425 aaPredicted RBP12.74□□□□□ -0.37
CLIP1-203ENST00000361654 USHBP1Q8N6Y0 703 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 TSPYL1Q9H0U9 437 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 ERICH3Q5RHP9 1530 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 ERLIN1O75477 346 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 CCDC178Q5BJE1 867 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 BEGAINQ9BUH8 593 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 ZBTB3Q9H5J0 574 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 TTC21BQ7Z4L5 1316 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 CFTRP13569 1480 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 TAX1BP1Q86VP1 789 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 PARP3Q9Y6F1 533 aa12.74□□□□□ -0.37
CLIP1-203ENST00000361654 TMPOP42166 694 aaKnown RBP12.73□□□□□ -0.37
CLIP1-203ENST00000361654 NLRP5P59047 1200 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 LIG1P18858 919 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 GRIPAP1Q4V328 841 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 CCDC184Q52MB2 194 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 MCM10Q7L590 875 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 KIAA1328Q86T90 577 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 CCDC91Q7Z6B0 441 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 COMMD10Q9Y6G5 202 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 CRNKL1Q9BZJ0 848 aaKnown RBP12.73□□□□□ -0.37
CLIP1-203ENST00000361654 SAMM50Q9Y512 469 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 WDR97A6NE52 1622 aa12.73□□□□□ -0.37
CLIP1-203ENST00000361654 UQCRFS1P1P0C7P4 283 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 NLRP3Q96P20 1036 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 UPF3BQ9BZI7 483 aaKnown RBP12.72□□□□□ -0.37
CLIP1-203ENST00000361654 NSD3Q9BZ95 1437 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 IFIT3O14879 490 aaKnown RBP12.72□□□□□ -0.37
CLIP1-203ENST00000361654 NUTM1Q86Y26 1132 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 CALRP27797 417 aaKnown RBP12.72□□□□□ -0.37
CLIP1-203ENST00000361654 DDB1Q16531 1140 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 UTP14AQ9BVJ6 771 aaKnown RBP12.72□□□□□ -0.37
CLIP1-203ENST00000361654 KAT14Q9H8E8 782 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 AMPD3Q01432 767 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 SPA17Q15506 151 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 CACNA2D4Q7Z3S7 1137 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 ADGRL1O94910 1474 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 HECW1Q76N89 1606 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 TSPY2A6NKD2 308 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 CALML4Q96GE6 196 aa12.72□□□□□ -0.37
CLIP1-203ENST00000361654 SNRPA1P09661 255 aaKnown RBP12.71□□□□□ -0.37
CLIP1-203ENST00000361654 SSRP1Q08945 709 aaKnown RBP12.71□□□□□ -0.37
CLIP1-203ENST00000361654 BOLA2Q9H3K6 86 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 MIS18AQ9NYP9 233 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 ABCC11Q96J66 1382 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 HOOK3Q86VS8 718 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 CDCA7LQ96GN5 454 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 LRRC27Q9C0I9 530 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 NYXQ9GZU5 481 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 TFCP2L1Q9NZI6 479 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 LRRC45Q96CN5 670 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 TCP11L1Q9NUJ3 509 aa12.71□□□□□ -0.37
CLIP1-203ENST00000361654 BIN2Q9UBW5 565 aaPredicted RBP12.71□□□□□ -0.37
CLIP1-203ENST00000361654 DENND4BO75064 1496 aaPredicted RBP12.71□□□□□ -0.38
CLIP1-203ENST00000361654 MX1P20591 662 aa12.71□□□□□ -0.38
CLIP1-203ENST00000361654 NCBP1Q09161 790 aaKnown RBP12.71□□□□□ -0.38
CLIP1-203ENST00000361654 LRRFIP2Q9Y608 721 aaKnown RBP12.71□□□□□ -0.38
CLIP1-203ENST00000361654 CCDC141Q6ZP82 1450 aa12.71□□□□□ -0.38
CLIP1-203ENST00000361654 ANKRD24Q8TF21 1146 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 HOMER2Q9NSB8 354 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 GOLGA8AA7E2F4 631 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 GOLGA8BA8MQT2 603 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 NME9Q86XW9 330 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 ZCRB1Q8TBF4 217 aaKnown RBP12.7□□□□□ -0.38
CLIP1-203ENST00000361654 SSX2IPQ9Y2D8 614 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 K7ELQ4 463 aaPredicted RBP12.7□□□□□ -0.38
CLIP1-203ENST00000361654 CASTP20810 708 aaKnown RBP12.7□□□□□ -0.38
CLIP1-203ENST00000361654 ATP6V1AP38606 617 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 USP37Q86T82 979 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 NUP62CLQ9H1M0 184 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 KIAA0586Q9BVV6 1533 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 EYA3Q99504 573 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 EXOC6BQ9Y2D4 811 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 C8orf76Q96K31 380 aa12.7□□□□□ -0.38
CLIP1-203ENST00000361654 PYM1Q9BRP8 204 aaKnown RBP12.7□□□□□ -0.38
CLIP1-203ENST00000361654 CTNNA2P26232 953 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms