RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 AMPD3Q01432 767 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 CCDC110Q8TBZ0 833 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 OPA1O60313 960 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 CEP135Q66GS9 1140 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 DNA2P51530 1060 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 MAP3K9P80192 1104 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 PSMC4P43686 418 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 SH2B1Q9NRF2 756 aaPredicted RBP10.7□□□□□ -0.7
VPS13A-203ENST00000360280 MRPS9P82933 396 aaKnown RBP10.7□□□□□ -0.7
VPS13A-203ENST00000360280 TTC21AQ8NDW8 1320 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 PRPHP41219 470 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 CWC27Q6UX04 472 aaKnown RBP10.7□□□□□ -0.7
VPS13A-203ENST00000360280 DRC1Q96MC2 740 aa10.7□□□□□ -0.7
VPS13A-203ENST00000360280 DNAJC21Q5F1R6 531 aaKnown RBP10.7□□□□□ -0.7
VPS13A-203ENST00000360280 MIPOL1Q8TD10 442 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 NOB1Q9ULX3 412 aaKnown RBP10.69□□□□□ -0.7
VPS13A-203ENST00000360280 ATF7IPQ6VMQ6 1270 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 EHMT1Q9H9B1 1298 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 ERICH3Q5RHP9 1530 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 C1orf115Q9H7X2 142 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 ATP2A1O14983 1001 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 KANK3Q6NY19 840 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 TRERF1Q96PN7 1200 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 TACC1O75410 805 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 SLU7O95391 586 aaKnown RBP10.69□□□□□ -0.7
VPS13A-203ENST00000360280 MAP4K4O95819 1239 aaPredicted RBP10.69□□□□□ -0.7
VPS13A-203ENST00000360280 CCDC121Q6ZUS5 278 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 AACSQ86V21 672 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 CCDC12Q8WUD4 166 aaPredicted RBP10.69□□□□□ -0.7
VPS13A-203ENST00000360280 RBM5P52756 815 aaKnown RBP eCLIP10.69□□□□□ -0.7
VPS13A-203ENST00000360280 GBP6Q6ZN66 633 aa10.69□□□□□ -0.7
VPS13A-203ENST00000360280 STXBP4Q6ZWJ1 553 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 CEP57Q86XR8 500 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 AIDAQ96BJ3 306 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 MVPQ14764 893 aaKnown RBP10.68□□□□□ -0.7
VPS13A-203ENST00000360280 CNNM3Q8NE01 707 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 SCLT1Q96NL6 688 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 C8orf76Q96K31 380 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 A0A1B0GUA9 196 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 SELENOOQ9BVL4 669 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 SIL1Q9H173 461 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 ATF3P18847 181 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 UBA5Q9GZZ9 404 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 SMC1BQ8NDV3 1235 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 TPD52P55327 224 aaPredicted RBP10.68□□□□□ -0.7
VPS13A-203ENST00000360280 CTAGE1Q96RT6 745 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 NLRP2Q9NX02 1062 aa10.68□□□□□ -0.7
VPS13A-203ENST00000360280 LUC7L2Q9Y383 392 aaKnown RBP10.67□□□□□ -0.7
VPS13A-203ENST00000360280 EBAG9O00559 213 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 APBB1IPQ7Z5R6 666 aaPredicted RBP10.67□□□□□ -0.7
VPS13A-203ENST00000360280 CTAGE9A4FU28 777 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 PIP4K2BP78356 416 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 CEP120Q8N960 986 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 ZNF428Q96B54 188 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 A0A087WZG4 1122 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 TUBB4AP04350 444 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 USH1CQ9Y6N9 552 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 XPCQ01831 940 aaPredicted RBP10.67□□□□□ -0.7
VPS13A-203ENST00000360280 PNISRQ8TF01 805 aaKnown RBP10.67□□□□□ -0.7
VPS13A-203ENST00000360280 RPUSD2Q8IZ73 545 aaKnown RBP10.67□□□□□ -0.7
VPS13A-203ENST00000360280 PLEKHO1Q53GL0 409 aaPredicted RBP10.67□□□□□ -0.7
VPS13A-203ENST00000360280 TCP11L2Q8N4U5 519 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 ARHGAP5Q13017 1502 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 NOP2P46087 812 aaKnown RBP10.67□□□□□ -0.7
VPS13A-203ENST00000360280 HDGFL1Q5TGJ6 251 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 TBC1D5Q92609 795 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 MICALL1Q8N3F8 863 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 RSPH14Q9UHP6 348 aa10.67□□□□□ -0.7
VPS13A-203ENST00000360280 CAPN2P17655 700 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 USP5P45974 858 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 CCDC77Q9BR77 488 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 ARL1P40616 181 aaPredicted RBP10.66□□□□□ -0.7
VPS13A-203ENST00000360280 SRRTQ9BXP5 876 aaKnown RBP10.66□□□□□ -0.7
VPS13A-203ENST00000360280 PAIP2Q9BPZ3 127 aaKnown RBP10.66□□□□□ -0.7
VPS13A-203ENST00000360280 ZBTB16Q05516 673 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 CCDC96Q2M329 555 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 TMC6Q7Z403 805 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 CALML4Q96GE6 196 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 LRP2BPQ9P2M1 347 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 FEZ2Q9UHY8 353 aaPredicted RBP10.66□□□□□ -0.7
VPS13A-203ENST00000360280 SLC4A2P04920 1241 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 FAM184BQ9ULE4 1060 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 SRGAP3O43295 1099 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 ADCY5O95622 1261 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 USP37Q86T82 979 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 HECW1Q76N89 1606 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 OTUD6BQ8N6M0 293 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 CCDC14Q49A88 953 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 ATP11AP98196 1134 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 ODF2LQ9ULJ1 636 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 VCX3BQ9H321 246 aa10.66□□□□□ -0.7
VPS13A-203ENST00000360280 SETDB1Q15047 1291 aa10.65□□□□□ -0.7
VPS13A-203ENST00000360280 KIAA1524Q8TCG1 905 aa10.65□□□□□ -0.7
VPS13A-203ENST00000360280 SPDYE4A6NLX3 237 aa10.65□□□□□ -0.7
VPS13A-203ENST00000360280 KIF5AQ12840 1032 aa10.65□□□□□ -0.7
VPS13A-203ENST00000360280 STMN2Q93045 179 aa10.65□□□□□ -0.7
VPS13A-203ENST00000360280 MTIF2P46199 727 aaKnown RBP10.65□□□□□ -0.7
VPS13A-203ENST00000360280 NDC80O14777 642 aa10.65□□□□□ -0.7
VPS13A-203ENST00000360280 GMNNO75496 209 aa10.65□□□□□ -0.7
VPS13A-203ENST00000360280 ZSCAN29Q8IWY8 852 aaPredicted RBP10.65□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms