RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 CHMLP26374 656 aa25.52■■□□□ 1.68
CCDC88B-203ENST00000359902 RILPL2Q969X0 211 aa25.52■■□□□ 1.68
CCDC88B-203ENST00000359902 TRIM6-TRIM34B2RNG4 842 aa25.51■■□□□ 1.67
CCDC88B-203ENST00000359902 RGPD5Q99666 1765 aa25.51■■□□□ 1.67
CCDC88B-203ENST00000359902 ST18O60284 1047 aa25.51■■□□□ 1.67
CCDC88B-203ENST00000359902 L1TD1Q5T7N2 865 aaKnown RBP25.5■■□□□ 1.67
CCDC88B-203ENST00000359902 UNC5CLQ8IV45 518 aa25.5■■□□□ 1.67
CCDC88B-203ENST00000359902 RHPN1Q8TCX5 695 aa25.5■■□□□ 1.67
CCDC88B-203ENST00000359902 PROSER3Q2NL68 480 aa25.49■■□□□ 1.67
CCDC88B-203ENST00000359902 ALS2Q96Q42 1657 aa25.49■■□□□ 1.67
CCDC88B-203ENST00000359902 PRAMEF22A3QJZ6 481 aa25.49■■□□□ 1.67
CCDC88B-203ENST00000359902 SSFA2P28290 1259 aa25.49■■□□□ 1.67
CCDC88B-203ENST00000359902 NUTM1Q86Y26 1132 aa25.49■■□□□ 1.67
CCDC88B-203ENST00000359902 FSD2A1L4K1 749 aa25.48■■□□□ 1.67
CCDC88B-203ENST00000359902 LMTK3Q96Q04 1460 aa25.48■■□□□ 1.67
CCDC88B-203ENST00000359902 MAP3K2Q9Y2U5 619 aa25.48■■□□□ 1.67
CCDC88B-203ENST00000359902 SIPA1L3O60292 1781 aaPredicted RBP25.47■■□□□ 1.67
CCDC88B-203ENST00000359902 CLEC17AQ6ZS10 378 aa25.47■■□□□ 1.67
CCDC88B-203ENST00000359902 KIF1BPQ96EK5 621 aa25.47■■□□□ 1.67
CCDC88B-203ENST00000359902 ADAMTS7Q9UKP4 1686 aa25.47■■□□□ 1.67
CCDC88B-203ENST00000359902 ATF3P18847 181 aa25.47■■□□□ 1.67
CCDC88B-203ENST00000359902 KSR2Q6VAB6 950 aa25.47■■□□□ 1.67
CCDC88B-203ENST00000359902 ALDH1L1O75891 902 aa25.46■■□□□ 1.67
CCDC88B-203ENST00000359902 GOLGA6L3A6NEY3 463 aa25.45■■□□□ 1.66
CCDC88B-203ENST00000359902 DDX17Q92841 729 aaKnown RBP25.45■■□□□ 1.66
CCDC88B-203ENST00000359902 MTX1Q13505 466 aa25.45■■□□□ 1.66
CCDC88B-203ENST00000359902 HYPKQ9NX55 129 aa25.45■■□□□ 1.66
CCDC88B-203ENST00000359902 PI4K2BQ8TCG2 481 aa25.44■■□□□ 1.66
CCDC88B-203ENST00000359902 RAPGEF4Q8WZA2 1011 aa25.44■■□□□ 1.66
CCDC88B-203ENST00000359902 TMEM94Q12767 1356 aa25.44■■□□□ 1.66
CCDC88B-203ENST00000359902 NLRP2Q9NX02 1062 aa25.43■■□□□ 1.66
CCDC88B-203ENST00000359902 PTMSP20962 102 aa25.43■■□□□ 1.66
CCDC88B-203ENST00000359902 HSP90AB4PQ58FF6 505 aa25.43■■□□□ 1.66
CCDC88B-203ENST00000359902 CWC22Q9HCG8 908 aaKnown RBP25.43■■□□□ 1.66
CCDC88B-203ENST00000359902 ANO2Q9NQ90 1003 aa25.42■■□□□ 1.66
CCDC88B-203ENST00000359902 C9orf78Q9NZ63 289 aaPredicted RBP25.42■■□□□ 1.66
CCDC88B-203ENST00000359902 NUCB2P80303 420 aa25.42■■□□□ 1.66
CCDC88B-203ENST00000359902 RTN4Q9NQC3 1192 aaKnown RBP25.42■■□□□ 1.66
CCDC88B-203ENST00000359902 MCCP23508 829 aa25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 NEK4P51957 841 aa25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 SKOR2Q2VWA4 1001 aaPredicted RBP25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 DDX21Q9NR30 783 aaKnown RBP eCLIP25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 PALD1Q9ULE6 856 aa25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 CYP2E1P05181 493 aaPredicted RBP25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 ANAPC15P60006 121 aa25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 PDIA6Q15084 440 aa25.41■■□□□ 1.66
CCDC88B-203ENST00000359902 XRCC6P12956 609 aaKnown RBP eCLIP25.4■■□□□ 1.666e-6■■■■■ 27.6
CCDC88B-203ENST00000359902 CWF19L2Q2TBE0 894 aaKnown RBP25.4■■□□□ 1.66
CCDC88B-203ENST00000359902 ZNF790Q6PG37 636 aa25.4■■□□□ 1.66
CCDC88B-203ENST00000359902 NPHP3Q7Z494 1330 aa25.4■■□□□ 1.66
CCDC88B-203ENST00000359902 BAG4O95429 457 aaKnown RBP25.4■■□□□ 1.66
CCDC88B-203ENST00000359902 ZGPATQ8N5A5 531 aaKnown RBP25.4■■□□□ 1.66
CCDC88B-203ENST00000359902 SLC52A2Q9HAB3 445 aa25.4■■□□□ 1.66
CCDC88B-203ENST00000359902 TATP17735 454 aaPredicted RBP25.39■■□□□ 1.66
CCDC88B-203ENST00000359902 IL17RAQ96F46 866 aa25.39■■□□□ 1.66
CCDC88B-203ENST00000359902 IL25Q9H293 177 aa25.39■■□□□ 1.66
CCDC88B-203ENST00000359902 KDM6AO15550 1401 aaPredicted RBP25.39■■□□□ 1.65
CCDC88B-203ENST00000359902 AK9Q5TCS8 1911 aa25.39■■□□□ 1.65
CCDC88B-203ENST00000359902 MAP4K4O95819 1239 aaPredicted RBP25.38■■□□□ 1.65
CCDC88B-203ENST00000359902 PHKG2P15735 406 aa25.38■■□□□ 1.65
CCDC88B-203ENST00000359902 SLC39A6Q13433 755 aa25.38■■□□□ 1.65
CCDC88B-203ENST00000359902 DCCP43146 1447 aa25.38■■□□□ 1.65
CCDC88B-203ENST00000359902 LINS1Q8NG48 757 aa25.38■■□□□ 1.65
CCDC88B-203ENST00000359902 SPG7Q9UQ90 795 aa25.38■■□□□ 1.65
CCDC88B-203ENST00000359902 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 HDAC5Q9UQL6 1122 aa25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 USP42Q9H9J4 1324 aaKnown RBP25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 EPB41L2O43491 1005 aaKnown RBP25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 DDX58O95786 925 aaKnown RBP25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 PKP1Q13835 747 aa25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 CABLES1Q8TDN4 633 aa25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 ARXQ96QS3 562 aa25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 STRCP1A6NGW2 1772 aa25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 COL18A1P39060 1754 aa25.37■■□□□ 1.65
CCDC88B-203ENST00000359902 OS9Q13438 667 aaPredicted RBP25.36■■□□□ 1.65
CCDC88B-203ENST00000359902 NFATC2IPQ8NCF5 419 aa25.36■■□□□ 1.65
CCDC88B-203ENST00000359902 GOLGA6L22H0YM25 854 aa25.36■■□□□ 1.65
CCDC88B-203ENST00000359902 MCM2P49736 904 aa25.36■■□□□ 1.65
CCDC88B-203ENST00000359902 AIMP1Q12904 312 aaKnown RBP25.36■■□□□ 1.65
CCDC88B-203ENST00000359902 SCN11AQ9UI33 1791 aa25.36■■□□□ 1.65
CCDC88B-203ENST00000359902 UTYO14607 1347 aa25.36■■□□□ 1.65
CCDC88B-203ENST00000359902 MEGF6O75095 1541 aa25.35■■□□□ 1.65
CCDC88B-203ENST00000359902 TMX3Q96JJ7 454 aa25.35■■□□□ 1.65
CCDC88B-203ENST00000359902 GRM8O00222 908 aa25.35■■□□□ 1.65
CCDC88B-203ENST00000359902 PRKCSHP14314 528 aaPredicted RBP25.35■■□□□ 1.65
CCDC88B-203ENST00000359902 TTC41PQ6P2S7 1318 aa25.34■■□□□ 1.65
CCDC88B-203ENST00000359902 IFNL2Q8IZJ0 200 aa25.34■■□□□ 1.65
CCDC88B-203ENST00000359902 CNTROBQ8N137 903 aa25.34■■□□□ 1.65
CCDC88B-203ENST00000359902 KAZALD1Q96I82 304 aa25.34■■□□□ 1.65
CCDC88B-203ENST00000359902 CRYBG1Q9Y4K1 1723 aa25.33■■□□□ 1.65
CCDC88B-203ENST00000359902 CSB-PGBD3P0DP91 1061 aa25.33■■□□□ 1.65
CCDC88B-203ENST00000359902 CADPS2Q86UW7 1296 aa25.33■■□□□ 1.65
CCDC88B-203ENST00000359902 CLASRPQ8N2M8 674 aaKnown RBP25.33■■□□□ 1.65
CCDC88B-203ENST00000359902 PA2G4Q9UQ80 394 aaKnown RBP25.33■■□□□ 1.65
CCDC88B-203ENST00000359902 SGSM2O43147 1006 aa25.32■■□□□ 1.64
CCDC88B-203ENST00000359902 CHRNA2Q15822 529 aa25.32■■□□□ 1.64
CCDC88B-203ENST00000359902 SUCLG2Q96I99 432 aa25.32■■□□□ 1.64
CCDC88B-203ENST00000359902 HSPA4P34932 840 aa25.32■■□□□ 1.64
CCDC88B-203ENST00000359902 ZDHHC9Q9Y397 364 aa25.32■■□□□ 1.64
CCDC88B-203ENST00000359902 GLRX3O76003 335 aaKnown RBP25.31■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms