RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 INTS5Q6P9B9 1019 aaKnown RBP28.74■■■□□ 2.19
SHMT1-203ENST00000354098 SMIM5Q71RC9 77 aa28.74■■■□□ 2.19
SHMT1-203ENST00000354098 E9PSI1 815 aa28.74■■■□□ 2.19
SHMT1-203ENST00000354098 AMIGO3Q86WK7 504 aa28.74■■■□□ 2.19
SHMT1-203ENST00000354098 AK7Q96M32 723 aa28.74■■■□□ 2.19
SHMT1-203ENST00000354098 ZBED9Q6R2W3 1325 aa28.73■■■□□ 2.19
SHMT1-203ENST00000354098 CNTNAP4Q9C0A0 1308 aa28.73■■■□□ 2.19
SHMT1-203ENST00000354098 A1BGP04217 495 aa28.73■■■□□ 2.19
SHMT1-203ENST00000354098 DUSP27Q5VZP5 1158 aa28.73■■■□□ 2.19
SHMT1-203ENST00000354098 TSPYL6Q8N831 410 aa28.73■■■□□ 2.19
SHMT1-203ENST00000354098 RC3H1Q5TC82 1133 aaKnown RBP28.72■■■□□ 2.19
SHMT1-203ENST00000354098 YTHDC1Q96MU7 727 aaKnown RBP28.72■■■□□ 2.19
SHMT1-203ENST00000354098 CCDC87Q9NVE4 849 aa28.72■■■□□ 2.19
SHMT1-203ENST00000354098 TFCP2L1Q9NZI6 479 aa28.72■■■□□ 2.19
SHMT1-203ENST00000354098 GNPATO15228 680 aa28.71■■■□□ 2.19
SHMT1-203ENST00000354098 HMGB2P26583 209 aaKnown RBP28.71■■■□□ 2.19
SHMT1-203ENST00000354098 MYH14Q7Z406 1995 aaKnown RBP28.71■■■□□ 2.19
SHMT1-203ENST00000354098 EIF2S2P20042 333 aaKnown RBP28.7■■■□□ 2.19
SHMT1-203ENST00000354098 PIP4K2AP48426 406 aaPredicted RBP28.7■■■□□ 2.19
SHMT1-203ENST00000354098 EXOSC9Q06265 439 aaKnown RBP28.7■■■□□ 2.19
SHMT1-203ENST00000354098 R3HDM1Q15032 1099 aaKnown RBP28.7■■■□□ 2.19
SHMT1-203ENST00000354098 ZBTB1Q9Y2K1 713 aa28.7■■■□□ 2.19
SHMT1-203ENST00000354098 TRMT2AQ8IZ69 625 aaKnown RBP28.7■■■□□ 2.18
SHMT1-203ENST00000354098 NECTIN2Q92692 538 aa28.69■■■□□ 2.18
SHMT1-203ENST00000354098 PSDA5PKW4 1024 aaPredicted RBP28.68■■■□□ 2.18
SHMT1-203ENST00000354098 CANXP27824 592 aaKnown RBP28.68■■■□□ 2.18
SHMT1-203ENST00000354098 LAMB4A4D0S4 1761 aa28.67■■■□□ 2.18
SHMT1-203ENST00000354098 RPS6KA4O75676 772 aa28.67■■■□□ 2.18
SHMT1-203ENST00000354098 PHF14O94880 888 aa28.67■■■□□ 2.18
SHMT1-203ENST00000354098 HOXB7P09629 217 aa28.67■■■□□ 2.18
SHMT1-203ENST00000354098 NBPF26B4DH59 902 aa28.66■■■□□ 2.18
SHMT1-203ENST00000354098 TWISTNBQ3B726 338 aaPredicted RBP28.66■■■□□ 2.18
SHMT1-203ENST00000354098 NBPF10Q6P3W6 841 aaKnown RBP28.66■■■□□ 2.18
SHMT1-203ENST00000354098 NBPF15Q8N660 670 aa28.66■■■□□ 2.18
SHMT1-203ENST00000354098 RTCBQ9Y3I0 505 aaKnown RBP28.66■■■□□ 2.18
SHMT1-203ENST00000354098 PNPLA7Q6ZV29 1317 aa28.65■■■□□ 2.18
SHMT1-203ENST00000354098 TUBGCP6Q96RT7 1819 aa28.65■■■□□ 2.18
SHMT1-203ENST00000354098 PDGFDQ9GZP0 370 aaPredicted RBP28.65■■■□□ 2.18
SHMT1-203ENST00000354098 UBR3Q6ZT12 1888 aa28.64■■■□□ 2.18
SHMT1-203ENST00000354098 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.64■■■□□ 2.17
SHMT1-203ENST00000354098 HDGFL1Q5TGJ6 251 aa28.64■■■□□ 2.17
SHMT1-203ENST00000354098 SOS1Q07889 1333 aaPredicted RBP28.62■■■□□ 2.17
SHMT1-203ENST00000354098 COL23A1Q86Y22 540 aaPredicted RBP28.62■■■□□ 2.17
SHMT1-203ENST00000354098 VAMP4O75379 141 aa28.61■■■□□ 2.17
SHMT1-203ENST00000354098 SSFA2P28290 1259 aa28.61■■■□□ 2.17
SHMT1-203ENST00000354098 PDIA6Q15084 440 aa28.61■■■□□ 2.17
SHMT1-203ENST00000354098 ZNF330Q9Y3S2 320 aaPredicted RBP28.61■■■□□ 2.17
SHMT1-203ENST00000354098 ANXA1P04083 346 aa28.61■■■□□ 2.17
SHMT1-203ENST00000354098 EIF5P55010 431 aaKnown RBP28.61■■■□□ 2.17
SHMT1-203ENST00000354098 MYL6BP14649 208 aa28.6■■■□□ 2.17
SHMT1-203ENST00000354098 PROSER3Q2NL68 480 aa28.6■■■□□ 2.17
SHMT1-203ENST00000354098 TRAPPC3LQ5T215 181 aa28.6■■■□□ 2.17
SHMT1-203ENST00000354098 ARHGEF1Q92888 912 aaKnown RBP28.6■■■□□ 2.17
SHMT1-203ENST00000354098 IL6STP40189 918 aaPredicted RBP28.59■■■□□ 2.17
SHMT1-203ENST00000354098 CHPF2Q9P2E5 772 aa28.59■■■□□ 2.17
SHMT1-203ENST00000354098 TCERG1O14776 1098 aaKnown RBP28.58■■■□□ 2.17
SHMT1-203ENST00000354098 MSH5O43196 834 aa28.58■■■□□ 2.17
SHMT1-203ENST00000354098 COL15A1P39059 1388 aa28.57■■■□□ 2.16
SHMT1-203ENST00000354098 QSER1Q2KHR3 1735 aa28.57■■■□□ 2.16
SHMT1-203ENST00000354098 FLAD1Q8NFF5 587 aa28.57■■■□□ 2.16
SHMT1-203ENST00000354098 ERBB4Q15303 1308 aa28.57■■■□□ 2.16
SHMT1-203ENST00000354098 ADRA2BP18089 450 aa28.56■■■□□ 2.16
SHMT1-203ENST00000354098 LRP10Q7Z4F1 713 aa28.56■■■□□ 2.16
SHMT1-203ENST00000354098 CCDC30Q5VVM6 783 aa28.55■■■□□ 2.16
SHMT1-203ENST00000354098 DDX21Q9NR30 783 aaKnown RBP eCLIP28.55■■■□□ 2.16
SHMT1-203ENST00000354098 DBF4Q9UBU7 674 aaPredicted RBP28.54■■■□□ 2.16
SHMT1-203ENST00000354098 RFC4P35249 363 aa28.54■■■□□ 2.16
SHMT1-203ENST00000354098 ARXQ96QS3 562 aa28.53■■■□□ 2.16
SHMT1-203ENST00000354098 SRP68Q9UHB9 627 aaKnown RBP28.53■■■□□ 2.16
SHMT1-203ENST00000354098 TBC1D2BQ9UPU7 963 aa28.53■■■□□ 2.16
SHMT1-203ENST00000354098 NPM2Q86SE8 214 aaKnown RBP28.51■■■□□ 2.16
SHMT1-203ENST00000354098 CASZ1Q86V15 1759 aa28.51■■■□□ 2.16
SHMT1-203ENST00000354098 C4AP0C0L4 1744 aa28.51■■■□□ 2.16
SHMT1-203ENST00000354098 DZIP3Q86Y13 1208 aaKnown RBP28.5■■■□□ 2.15
SHMT1-203ENST00000354098 CHMP4AQ9BY43 222 aa28.5■■■□□ 2.15
SHMT1-203ENST00000354098 A0A087WZG4 1122 aa28.49■■■□□ 2.15
SHMT1-203ENST00000354098 TTLL7Q6ZT98 887 aa28.49■■■□□ 2.15
SHMT1-203ENST00000354098 PHAXQ9H814 394 aaKnown RBP28.49■■■□□ 2.15
SHMT1-203ENST00000354098 NARFQ9UHQ1 456 aa28.49■■■□□ 2.15
SHMT1-203ENST00000354098 USP42Q9H9J4 1324 aaKnown RBP28.49■■■□□ 2.15
SHMT1-203ENST00000354098 ZBTB7AO95365 584 aa28.48■■■□□ 2.15
SHMT1-203ENST00000354098 AIMP1Q12904 312 aaKnown RBP28.48■■■□□ 2.15
SHMT1-203ENST00000354098 USPL1Q5W0Q7 1092 aa28.48■■■□□ 2.15
SHMT1-203ENST00000354098 STK31Q9BXU1 1019 aa28.48■■■□□ 2.15
SHMT1-203ENST00000354098 SLC4A2P04920 1241 aa28.48■■■□□ 2.15
SHMT1-203ENST00000354098 COPS6Q7L5N1 327 aa28.48■■■□□ 2.15
SHMT1-203ENST00000354098 XAGE3Q8WTP9 111 aa28.48■■■□□ 2.15
SHMT1-203ENST00000354098 HYPKQ9NX55 129 aa28.48■■■□□ 2.15
SHMT1-203ENST00000354098 ZPR1O75312 459 aa28.47■■■□□ 2.15
SHMT1-203ENST00000354098 GYS1P13807 737 aa28.46■■■□□ 2.15
SHMT1-203ENST00000354098 MSL1Q68DK7 614 aa28.46■■■□□ 2.15
SHMT1-203ENST00000354098 CAMTA2O94983 1202 aa28.45■■■□□ 2.15
SHMT1-203ENST00000354098 SLC16A10Q8TF71 515 aa28.45■■■□□ 2.15
SHMT1-203ENST00000354098 BCL2L12Q9HB09 334 aa28.45■■■□□ 2.15
SHMT1-203ENST00000354098 G2E3Q7L622 706 aa28.45■■■□□ 2.14
SHMT1-203ENST00000354098 CT47B1P0C2W7 299 aaPredicted RBP28.44■■■□□ 2.14
SHMT1-203ENST00000354098 ATF5Q9Y2D1 282 aaPredicted RBP28.44■■■□□ 2.14
SHMT1-203ENST00000354098 FKBP8Q14318 412 aa28.43■■■□□ 2.14
SHMT1-203ENST00000354098 SSH1Q8WYL5 1049 aa28.43■■■□□ 2.14
SHMT1-203ENST00000354098 ZBTB3Q9H5J0 574 aa28.43■■■□□ 2.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms