RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 CYP46A1Q9Y6A2 500 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 ATP2B1P20020 1258 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 NBPF6Q5VWK0 638 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 CREBRFQ8IUR6 639 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 NBPF4Q96M43 638 aa14.3□□□□□ -0.12
USP1-201ENST00000339950 APPP05067 770 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 GJB2P29033 226 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 CCT2P78371 535 aaKnown RBP14.29□□□□□ -0.12
USP1-201ENST00000339950 WASHC4Q2M389 1173 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 PROSER3Q2NL68 480 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 ZNF853P0CG23 659 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 PLEKHO1Q53GL0 409 aaPredicted RBP14.29□□□□□ -0.12
USP1-201ENST00000339950 DDX46Q7L014 1031 aaKnown RBP14.29□□□□□ -0.12
USP1-201ENST00000339950 PROSER2Q86WR7 435 aaPredicted RBP14.29□□□□□ -0.12
USP1-201ENST00000339950 FAM227BQ96M60 508 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 MYOM2P54296 1465 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 RASEFQ8IZ41 740 aa14.29□□□□□ -0.12
USP1-201ENST00000339950 FKBP4Q02790 459 aaKnown RBP eCLIP14.28□□□□□ -0.12
USP1-201ENST00000339950 SF3A1Q15459 793 aaKnown RBP14.28□□□□□ -0.12
USP1-201ENST00000339950 UBE3BQ7Z3V4 1068 aa14.28□□□□□ -0.12
USP1-201ENST00000339950 IL25Q9H293 177 aa14.28□□□□□ -0.12
USP1-201ENST00000339950 SOS1Q07889 1333 aaPredicted RBP14.28□□□□□ -0.12
USP1-201ENST00000339950 TULP4Q9NRJ4 1543 aa14.28□□□□□ -0.12
USP1-201ENST00000339950 MBD3O95983 291 aa14.28□□□□□ -0.12
USP1-201ENST00000339950 HOXC9P31274 260 aa14.28□□□□□ -0.12
USP1-201ENST00000339950 GNL2Q13823 731 aaKnown RBP14.28□□□□□ -0.12
USP1-201ENST00000339950 WDR33Q9C0J8 1336 aaKnown RBP14.28□□□□□ -0.12
USP1-201ENST00000339950 SPHKAPQ2M3C7 1700 aa14.28□□□□□ -0.12
USP1-201ENST00000339950 CCDC129Q6ZRS4 1044 aa14.28□□□□□ -0.12
USP1-201ENST00000339950 ZHX1Q9UKY1 873 aaPredicted RBP14.28□□□□□ -0.12
USP1-201ENST00000339950 THEMISQ8N1K5 641 aaPredicted RBP14.27□□□□□ -0.12
USP1-201ENST00000339950 ROBO2Q9HCK4 1378 aa14.27□□□□□ -0.12
USP1-201ENST00000339950 PHF14O94880 888 aa14.27□□□□□ -0.12
USP1-201ENST00000339950 PUS7Q96PZ0 661 aaKnown RBP14.27□□□□□ -0.12
USP1-201ENST00000339950 TRIM5Q9C035 493 aa14.27□□□□□ -0.12
USP1-201ENST00000339950 RNF17Q9BXT8 1623 aaKnown RBP14.27□□□□□ -0.13
USP1-201ENST00000339950 ERCC4Q92889 916 aaPredicted RBP14.27□□□□□ -0.13
USP1-201ENST00000339950 A0A087WWV3 80 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 TULP1O00294 542 aaPredicted RBP14.26□□□□□ -0.13
USP1-201ENST00000339950 HAND2P61296 217 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 ISM2Q6H9L7 571 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 ZBTB3Q9H5J0 574 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 UHRF1BP1LA0JNW5 1464 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 CLASP1Q7Z460 1538 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 STX6O43752 255 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 DDX58O95786 925 aaKnown RBP14.26□□□□□ -0.13
USP1-201ENST00000339950 BLOC1S2Q6QNY1 142 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 PDZRN4Q6ZMN7 1036 aaPredicted RBP14.26□□□□□ -0.13
USP1-201ENST00000339950 ISY1Q9ULR0 285 aaKnown RBP14.26□□□□□ -0.13
USP1-201ENST00000339950 ZSCAN21Q9Y5A6 473 aaPredicted RBP14.26□□□□□ -0.13
USP1-201ENST00000339950 EFCAB6Q5THR3 1501 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 LAMC1P11047 1609 aa14.26□□□□□ -0.13
USP1-201ENST00000339950 SLFNL1Q499Z3 407 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 KIF1BO60333 1816 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 NLRP1Q9C000 1473 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 IQGAP1P46940 1657 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 CHGBP05060 677 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 PTH1RQ03431 593 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 NFATC2IPQ8NCF5 419 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 TNRQ92752 1358 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 BECN2A8MW95 431 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 ADCY5O95622 1261 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 COPS6Q7L5N1 327 aa14.25□□□□□ -0.13
USP1-201ENST00000339950 IGSF3O75054 1194 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 SYT1P21579 422 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 ADCK5Q3MIX3 580 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 FILIP1Q7Z7B0 1213 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 CEP152O94986 1710 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 LIMCH1Q9UPQ0 1083 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 AK9Q5TCS8 1911 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 TET3O43151 1660 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 CCDC82Q8N4S0 544 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 ATP6V1DQ9Y5K8 247 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 GLRX3O76003 335 aaKnown RBP14.24□□□□□ -0.13
USP1-201ENST00000339950 XAGE3Q8WTP9 111 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 ZDHHC9Q9Y397 364 aa14.24□□□□□ -0.13
USP1-201ENST00000339950 ECHDC1Q9NTX5 307 aa14.23□□□□□ -0.13
USP1-201ENST00000339950 CCDC39Q9UFE4 941 aa14.23□□□□□ -0.13
USP1-201ENST00000339950 RBM8AQ9Y5S9 174 aaKnown RBP14.23□□□□□ -0.13
USP1-201ENST00000339950 LRSAM1Q6UWE0 723 aa14.23□□□□□ -0.13
USP1-201ENST00000339950 ANKRD24Q8TF21 1146 aa14.23□□□□□ -0.13
USP1-201ENST00000339950 LARGE1O95461 756 aa14.23□□□□□ -0.13
USP1-201ENST00000339950 MCM2P49736 904 aa14.23□□□□□ -0.13
USP1-201ENST00000339950 NMIQ13287 307 aaPredicted RBP14.23□□□□□ -0.13
USP1-201ENST00000339950 HSP90AB4PQ58FF6 505 aa14.23□□□□□ -0.13
USP1-201ENST00000339950 EDC4Q6P2E9 1401 aaKnown RBP14.22□□□□□ -0.13
USP1-201ENST00000339950 TLR7Q9NYK1 1049 aaKnown RBP14.22□□□□□ -0.13
USP1-201ENST00000339950 A0A087WZG4 1122 aa14.22□□□□□ -0.13
USP1-201ENST00000339950 SEC62Q99442 399 aaKnown RBP14.22□□□□□ -0.13
USP1-201ENST00000339950 SNX14Q9Y5W7 946 aa14.22□□□□□ -0.13
USP1-201ENST00000339950 PPRC1Q5VV67 1664 aaKnown RBP14.22□□□□□ -0.13
USP1-201ENST00000339950 GOLGA6L19H0YKK7 550 aa14.22□□□□□ -0.13
USP1-201ENST00000339950 BICC1Q9H694 974 aaKnown RBP14.22□□□□□ -0.13
USP1-201ENST00000339950 ABCC3O15438 1527 aa14.21□□□□□ -0.13
USP1-201ENST00000339950 RNF20Q5VTR2 975 aa14.21□□□□□ -0.13
USP1-201ENST00000339950 ZNF771Q7L3S4 317 aaPredicted RBP14.21□□□□□ -0.13
USP1-201ENST00000339950 SPATA32Q96LK8 384 aa14.21□□□□□ -0.13
USP1-201ENST00000339950 DBF4Q9UBU7 674 aaPredicted RBP14.21□□□□□ -0.13
USP1-201ENST00000339950 MTMR7Q9Y216 660 aa14.21□□□□□ -0.13
USP1-201ENST00000339950 IQSEC2Q5JU85 1478 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 130.2 ms