RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 NIFKQ9BYG3 293 aaKnown RBP6.11□□□□□ -1.43
HMGB1-201ENST00000326004 ATP13A2Q9NQ11 1180 aa6.11□□□□□ -1.43
HMGB1-201ENST00000326004 SERTM1A2A2V5 107 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 ST8SIA5O15466 376 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 HIRAP54198 1017 aaPredicted RBP6.1□□□□□ -1.43
HMGB1-201ENST00000326004 TBCELQ5QJ74 424 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 LYSMD3Q7Z3D4 306 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 TXNDC2Q86VQ3 553 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 ZNF295-AS1Q8N0V1 137 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 CHMP7Q8WUX9 453 aaPredicted RBP6.1□□□□□ -1.43
HMGB1-201ENST00000326004 CABP1Q9NZU7 370 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 USP3Q9Y6I4 520 aa6.1□□□□□ -1.43
HMGB1-201ENST00000326004 EML1O00423 815 aa6.09□□□□□ -1.43
HMGB1-201ENST00000326004 NOS2P35228 1153 aa6.09□□□□□ -1.43
HMGB1-201ENST00000326004 KIFC2Q96AC6 838 aa6.09□□□□□ -1.43
HMGB1-201ENST00000326004 SENP2Q9HC62 589 aa6.09□□□□□ -1.43
HMGB1-201ENST00000326004 TRIM26Q12899 539 aaPredicted RBP6.08□□□□□ -1.44
HMGB1-201ENST00000326004 C4orf17Q53FE4 359 aa6.08□□□□□ -1.44
HMGB1-201ENST00000326004 ZDHHC1Q8WTX9 485 aa6.08□□□□□ -1.44
HMGB1-201ENST00000326004 L3MBTL2Q969R5 705 aa6.08□□□□□ -1.44
HMGB1-201ENST00000326004 MKNK1Q9BUB5 465 aa6.08□□□□□ -1.44
HMGB1-201ENST00000326004 ZNF232Q9UNY5 417 aa6.08□□□□□ -1.44
HMGB1-201ENST00000326004 IVNS1ABPQ9Y6Y0 642 aa6.08□□□□□ -1.44
HMGB1-201ENST00000326004 ZNF800Q2TB10 664 aaPredicted RBP eCLIP6.07□□□□□ -1.44
HMGB1-201ENST00000326004 NBPF1Q3BBV0 1214 aa6.07□□□□□ -1.44
HMGB1-201ENST00000326004 NBPF10Q6P3W6 841 aaKnown RBP6.07□□□□□ -1.44
HMGB1-201ENST00000326004 PRICKLE2Q7Z3G6 844 aa6.07□□□□□ -1.44
HMGB1-201ENST00000326004 ZDHHC3Q9NYG2 299 aa6.07□□□□□ -1.44
HMGB1-201ENST00000326004 EGFL7Q9UHF1 273 aa6.07□□□□□ -1.44
HMGB1-201ENST00000326004 FIGNL2A6NMB9 653 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 MAN1A2O60476 641 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 PLA2G4AP47712 749 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 POU4F2Q12837 409 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 C1orf53Q5VUE5 145 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 Q6ZNB5 142 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 MYO19Q96H55 970 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 DACH1Q9UI36 760 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 DNMT3LQ9UJW3 386 aa6.06□□□□□ -1.44
HMGB1-201ENST00000326004 A0A1B0GTH6 734 aa6.05□□□□□ -1.44
HMGB1-201ENST00000326004 TATP17735 454 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-201ENST00000326004 C16orf46Q6P387 395 aa6.05□□□□□ -1.44
HMGB1-201ENST00000326004 ALDH16A1Q8IZ83 802 aa6.05□□□□□ -1.44
HMGB1-201ENST00000326004 TIMMDC1Q9NPL8 285 aa6.05□□□□□ -1.44
HMGB1-201ENST00000326004 SEPT3Q9UH03 358 aa6.05□□□□□ -1.44
HMGB1-201ENST00000326004 GPC6Q9Y625 555 aaPredicted RBP6.05□□□□□ -1.44
HMGB1-201ENST00000326004 RHOQP17081 205 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 SCNN1AP37088 669 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 PHKA2P46019 1235 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 SERPINB4P48594 390 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 SF3B2Q13435 895 aaKnown RBP6.04□□□□□ -1.44
HMGB1-201ENST00000326004 HIF1AQ16665 826 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 RTN1Q16799 776 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 SH3PXD2AQ5TCZ1 1133 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 CAPN12Q6ZSI9 719 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 HELQQ8TDG4 1101 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 GTF3C2Q8WUA4 911 aaPredicted RBP6.04□□□□□ -1.44
HMGB1-201ENST00000326004 AIDAQ96BJ3 306 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 TRIM47Q96LD4 638 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 PHACTR1Q9C0D0 580 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 QTRT2Q9H974 415 aaKnown RBP6.04□□□□□ -1.44
HMGB1-201ENST00000326004 HCN4Q9Y3Q4 1203 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 PARP3Q9Y6F1 533 aa6.04□□□□□ -1.44
HMGB1-201ENST00000326004 ABL1P00519 1130 aa6.03□□□□□ -1.44
HMGB1-201ENST00000326004 TXLNAP40222 546 aa6.03□□□□□ -1.44
HMGB1-201ENST00000326004 FKBP4Q02790 459 aaKnown RBP eCLIP6.03□□□□□ -1.447e-6■■■■□ 25.4
HMGB1-201ENST00000326004 NAA30Q147X3 362 aaPredicted RBP6.03□□□□□ -1.44
HMGB1-201ENST00000326004 RHPN1Q8TCX5 695 aa6.03□□□□□ -1.44
HMGB1-201ENST00000326004 NGLY1Q96IV0 654 aa6.03□□□□□ -1.44
HMGB1-201ENST00000326004 GZF1Q9H116 711 aaPredicted RBP6.03□□□□□ -1.44
HMGB1-201ENST00000326004 DYRK1BQ9Y463 629 aa6.03□□□□□ -1.44
HMGB1-201ENST00000326004 SOWAHDA6NJG2 315 aa6.02□□□□□ -1.45
HMGB1-201ENST00000326004 ICMTO60725 284 aa6.02□□□□□ -1.45
HMGB1-201ENST00000326004 COX20Q5RI15 118 aa6.02□□□□□ -1.45
HMGB1-201ENST00000326004 SND1Q7KZF4 910 aaKnown RBP eCLIP6.02□□□□□ -1.45
HMGB1-201ENST00000326004 GMPR2Q9P2T1 348 aaKnown RBP6.02□□□□□ -1.45
HMGB1-201ENST00000326004 DNMT3AQ9Y6K1 912 aaPredicted RBP6.02□□□□□ -1.45
HMGB1-201ENST00000326004 F11P03951 625 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 ATP4AP20648 1035 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 BRD2P25440 801 aaKnown RBP6.01□□□□□ -1.45
HMGB1-201ENST00000326004 MSX1P28360 303 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 C11orf91Q3C1V1 193 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 BICDL1Q6ZP65 573 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 GLYCTKQ8IVS8 523 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 SAP130Q9H0E3 1048 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 ANKIB1Q9P2G1 1089 aa6.01□□□□□ -1.45
HMGB1-201ENST00000326004 SENP3-EIF4A1A0A087X0R7 540 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 H3BRB1 525 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 FAM13AO94988 1023 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 NPR3P17342 541 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 PTSQ03393 145 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 ZNF211Q13398 564 aaPredicted RBP6□□□□□ -1.45
HMGB1-201ENST00000326004 DGKZQ13574 1117 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 ABTB2Q8N961 1025 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 C7orf43Q8WVR3 580 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 CRISPLD1Q9H336 500 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 TUT1Q9H6E5 874 aaKnown RBP6□□□□□ -1.45
HMGB1-201ENST00000326004 STIM2Q9P246 746 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 LRFN2Q9ULH4 789 aa6□□□□□ -1.45
HMGB1-201ENST00000326004 SLC35F4A4IF30 521 aa5.99□□□□□ -1.45
HMGB1-201ENST00000326004 SOBPA7XYQ1 873 aa5.99□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms