RNA–Protein interactions for RNA: ENST00000317677.9

CPNE1-201, Transcript of copine 1, humanhuman

TSL 1 (best) BASIC

Gene CPNE1, Length 1,961 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-201ENST00000317677 GJD4Q96KN9 370 aaPredicted RBP16.3■□□□□ 0.2
CPNE1-201ENST00000317677 MRC1P22897 1456 aa16.3■□□□□ 0.2
CPNE1-201ENST00000317677 C5P01031 1676 aa16.3■□□□□ 0.2
CPNE1-201ENST00000317677 FLIIQ13045 1269 aa16.29■□□□□ 0.2
CPNE1-201ENST00000317677 STK31Q9BXU1 1019 aa16.29■□□□□ 0.2
CPNE1-201ENST00000317677 HDGFL1Q5TGJ6 251 aa16.29■□□□□ 0.2
CPNE1-201ENST00000317677 NAP1L5Q96NT1 182 aaPredicted RBP16.29■□□□□ 0.2
CPNE1-201ENST00000317677 MEIS3Q99687 375 aa16.28■□□□□ 0.2
CPNE1-201ENST00000317677 SPG7Q9UQ90 795 aa16.28■□□□□ 0.2
CPNE1-201ENST00000317677 COL14A1Q05707 1796 aaKnown RBP16.28■□□□□ 0.2
CPNE1-201ENST00000317677 PRAMEF22A3QJZ6 481 aa16.27■□□□□ 0.2
CPNE1-201ENST00000317677 FAM161AQ3B820 660 aa16.27■□□□□ 0.2
CPNE1-201ENST00000317677 PHAXQ9H814 394 aaKnown RBP16.27■□□□□ 0.2
CPNE1-201ENST00000317677 HOXB7P09629 217 aa16.27■□□□□ 0.19
CPNE1-201ENST00000317677 UPF1Q92900 1129 aaKnown RBP eCLIP16.27■□□□□ 0.19
CPNE1-201ENST00000317677 CHMP4BQ9H444 224 aaKnown RBP16.27■□□□□ 0.19
CPNE1-201ENST00000317677 GLI3P10071 1580 aa16.26■□□□□ 0.19
CPNE1-201ENST00000317677 EIF2S2P20042 333 aaKnown RBP16.26■□□□□ 0.19
CPNE1-201ENST00000317677 VPS72Q15906 364 aa16.26■□□□□ 0.19
CPNE1-201ENST00000317677 IFNL2Q8IZJ0 200 aa16.26■□□□□ 0.19
CPNE1-201ENST00000317677 SLC52A2Q9HAB3 445 aa16.26■□□□□ 0.19
CPNE1-201ENST00000317677 LARP1Q6PKG0 1096 aaKnown RBP16.26■□□□□ 0.19
CPNE1-201ENST00000317677 TOM1L2Q6ZVM7 507 aa16.26■□□□□ 0.19
CPNE1-201ENST00000317677 CHPF2Q9P2E5 772 aa16.26■□□□□ 0.19
CPNE1-201ENST00000317677 GIGYF1O75420 1035 aaPredicted RBP16.25■□□□□ 0.19
CPNE1-201ENST00000317677 SLC4A3P48751 1232 aa16.25■□□□□ 0.19
CPNE1-201ENST00000317677 FKBP5Q13451 457 aaPredicted RBP16.25■□□□□ 0.19
CPNE1-201ENST00000317677 SLC4A10Q6U841 1118 aa16.25■□□□□ 0.19
CPNE1-201ENST00000317677 CCDC9Q9Y3X0 531 aaKnown RBP16.25■□□□□ 0.19
CPNE1-201ENST00000317677 PXDNLA1KZ92 1463 aa16.24■□□□□ 0.19
CPNE1-201ENST00000317677 ANXA1P04083 346 aa16.24■□□□□ 0.19
CPNE1-201ENST00000317677 NUCB1Q02818 461 aa16.24■□□□□ 0.19
CPNE1-201ENST00000317677 SLC39A6Q13433 755 aa16.24■□□□□ 0.19
CPNE1-201ENST00000317677 PDCL3Q9H2J4 239 aa16.24■□□□□ 0.19
CPNE1-201ENST00000317677 CARD10Q9BWT7 1032 aa16.24■□□□□ 0.19
CPNE1-201ENST00000317677 BTG4Q9NY30 223 aa16.24■□□□□ 0.19
CPNE1-201ENST00000317677 CCT4P50991 539 aaKnown RBP16.23■□□□□ 0.19
CPNE1-201ENST00000317677 CEP85Q6P2H3 762 aa16.23■□□□□ 0.19
CPNE1-201ENST00000317677 NFATC2IPQ8NCF5 419 aa16.23■□□□□ 0.19
CPNE1-201ENST00000317677 NRAPQ86VF7 1730 aa16.22■□□□□ 0.19
CPNE1-201ENST00000317677 PROSER3Q2NL68 480 aa16.22■□□□□ 0.19
CPNE1-201ENST00000317677 ANKRD44Q8N8A2 993 aa16.22■□□□□ 0.19
CPNE1-201ENST00000317677 DCAF5Q96JK2 942 aa16.22■□□□□ 0.19
CPNE1-201ENST00000317677 STRN4Q9NRL3 753 aa16.22■□□□□ 0.19
CPNE1-201ENST00000317677 TOGARAM1Q9Y4F4 1720 aa16.22■□□□□ 0.19
CPNE1-201ENST00000317677 ZNF790Q6PG37 636 aa16.22■□□□□ 0.19
CPNE1-201ENST00000317677 LNPKQ9C0E8 428 aa16.21■□□□□ 0.19
CPNE1-201ENST00000317677 FSD2A1L4K1 749 aa16.2■□□□□ 0.18
CPNE1-201ENST00000317677 CHD1LQ86WJ1 897 aa16.2■□□□□ 0.18
CPNE1-201ENST00000317677 GCC1Q96CN9 775 aa16.2■□□□□ 0.18
CPNE1-201ENST00000317677 ADCY9O60503 1353 aa16.2■□□□□ 0.18
CPNE1-201ENST00000317677 PAPPAQ13219 1627 aa16.2■□□□□ 0.18
CPNE1-201ENST00000317677 TPM2P07951 284 aa16.2■□□□□ 0.18
CPNE1-201ENST00000317677 ZCRB1Q8TBF4 217 aaKnown RBP16.2■□□□□ 0.18
CPNE1-201ENST00000317677 UBR2Q8IWV8 1755 aa16.19■□□□□ 0.18
CPNE1-201ENST00000317677 SEC24BO95487 1268 aa16.19■□□□□ 0.18
CPNE1-201ENST00000317677 IL2RBP14784 551 aa16.19■□□□□ 0.18
CPNE1-201ENST00000317677 PDIA6Q15084 440 aa16.18■□□□□ 0.18
CPNE1-201ENST00000317677 RPAP2Q8IXW5 612 aaPredicted RBP16.18■□□□□ 0.18
CPNE1-201ENST00000317677 ZNF496Q96IT1 587 aaPredicted RBP16.18■□□□□ 0.18
CPNE1-201ENST00000317677 DCTPP1Q9H773 170 aa16.18■□□□□ 0.18
CPNE1-201ENST00000317677 PCDH11XQ9BZA7 1347 aa16.18■□□□□ 0.18
CPNE1-201ENST00000317677 PCDH11YQ9BZA8 1340 aa16.18■□□□□ 0.18
CPNE1-201ENST00000317677 ANKRD45Q5TZF3 282 aa16.18■□□□□ 0.18
CPNE1-201ENST00000317677 WNK3Q9BYP7 1800 aa16.18■□□□□ 0.18
CPNE1-201ENST00000317677 LAMB4A4D0S4 1761 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 BRWD3Q6RI45 1802 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 HSP90AB1P08238 724 aaKnown RBP16.17■□□□□ 0.18
CPNE1-201ENST00000317677 EVA1CP58658 441 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 SEPT12Q8IYM1 358 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 DBF4Q9UBU7 674 aaPredicted RBP16.17■□□□□ 0.18
CPNE1-201ENST00000317677 PRDM4Q9UKN5 801 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 DISP2A7MBM2 1401 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 A0A0G2JS52 829 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 PI4KAP2A4QPH2 592 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 ONECUT3O60422 494 aaPredicted RBP16.17■□□□□ 0.18
CPNE1-201ENST00000317677 RBM10P98175 930 aaKnown RBP16.17■□□□□ 0.18
CPNE1-201ENST00000317677 NKX1-1Q15270 411 aaPredicted RBP16.17■□□□□ 0.18
CPNE1-201ENST00000317677 PI4KAP1Q8N8J0 262 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 USP44Q9H0E7 712 aa16.17■□□□□ 0.18
CPNE1-201ENST00000317677 XRCC6P12956 609 aaKnown RBP eCLIP16.16■□□□□ 0.18
CPNE1-201ENST00000317677 CABP4P57796 275 aa16.15■□□□□ 0.18
CPNE1-201ENST00000317677 BEND3Q5T5X7 828 aa16.15■□□□□ 0.18
CPNE1-201ENST00000317677 CCDC125Q86Z20 511 aa16.15■□□□□ 0.18
CPNE1-201ENST00000317677 SPATA31A5Q5VU36 1347 aa16.15■□□□□ 0.18
CPNE1-201ENST00000317677 SPATA31A7Q8IWB4 1347 aa16.15■□□□□ 0.18
CPNE1-201ENST00000317677 KCPQ6ZWJ8 1503 aa16.15■□□□□ 0.18
CPNE1-201ENST00000317677 DNAAF4Q8WXU2 420 aa16.15■□□□□ 0.18
CPNE1-201ENST00000317677 GNAI2P04899 355 aa16.14■□□□□ 0.17
CPNE1-201ENST00000317677 CHMP4AQ9BY43 222 aa16.14■□□□□ 0.17
CPNE1-201ENST00000317677 DDX21Q9NR30 783 aaKnown RBP eCLIP16.14■□□□□ 0.17
CPNE1-201ENST00000317677 FAM98CQ17RN3 349 aaKnown RBP16.13■□□□□ 0.17
CPNE1-201ENST00000317677 LRP10Q7Z4F1 713 aa16.13■□□□□ 0.17
CPNE1-201ENST00000317677 USP16Q9Y5T5 823 aa16.13■□□□□ 0.17
CPNE1-201ENST00000317677 GOLGA6L3A6NEY3 463 aa16.13■□□□□ 0.17
CPNE1-201ENST00000317677 GNAI3P08754 354 aa16.13■□□□□ 0.17
CPNE1-201ENST00000317677 FGD1P98174 961 aa16.13■□□□□ 0.17
CPNE1-201ENST00000317677 KRT27Q7Z3Y8 459 aa16.13■□□□□ 0.17
CPNE1-201ENST00000317677 DDX54Q8TDD1 881 aaKnown RBP16.13■□□□□ 0.17
CPNE1-201ENST00000317677 SRCIN1Q9C0H9 1055 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms