RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 NPM2Q86SE8 214 aaKnown RBP23.15■■□□□ 1.3
SSSCA1-201ENST00000309328 ANO8Q9HCE9 1232 aaPredicted RBP23.15■■□□□ 1.3
SSSCA1-201ENST00000309328 RTCBQ9Y3I0 505 aaKnown RBP23.15■■□□□ 1.3
SSSCA1-201ENST00000309328 C4BP0C0L5 1744 aa23.15■■□□□ 1.3
SSSCA1-201ENST00000309328 GNPATO15228 680 aa23.14■■□□□ 1.29
SSSCA1-201ENST00000309328 TJP1Q07157 1748 aa23.13■■□□□ 1.29
SSSCA1-201ENST00000309328 RPS6KA4O75676 772 aa23.13■■□□□ 1.29
SSSCA1-201ENST00000309328 SLFN5Q08AF3 891 aa23.13■■□□□ 1.29
SSSCA1-201ENST00000309328 ZNF827Q17R98 1081 aa23.13■■□□□ 1.29
SSSCA1-201ENST00000309328 DUSP27Q5VZP5 1158 aa23.13■■□□□ 1.29
SSSCA1-201ENST00000309328 TSR2Q969E8 191 aaKnown RBP23.13■■□□□ 1.29
SSSCA1-201ENST00000309328 COL5A3P25940 1745 aaPredicted RBP23.12■■□□□ 1.29
SSSCA1-201ENST00000309328 IL6STP40189 918 aaPredicted RBP23.12■■□□□ 1.29
SSSCA1-201ENST00000309328 INTS5Q6P9B9 1019 aaKnown RBP23.12■■□□□ 1.29
SSSCA1-201ENST00000309328 USP16Q9Y5T5 823 aa23.12■■□□□ 1.29
SSSCA1-201ENST00000309328 TAF1LQ8IZX4 1826 aa23.12■■□□□ 1.29
SSSCA1-201ENST00000309328 A0A087WZG4 1122 aa23.1■■□□□ 1.29
SSSCA1-201ENST00000309328 CT47B1P0C2W7 299 aaPredicted RBP23.09■■□□□ 1.29
SSSCA1-201ENST00000309328 TRAPPC3LQ5T215 181 aa23.09■■□□□ 1.29
SSSCA1-201ENST00000309328 HDGFL1Q5TGJ6 251 aa23.09■■□□□ 1.29
SSSCA1-201ENST00000309328 TRMT2AQ8IZ69 625 aaKnown RBP23.09■■□□□ 1.29
SSSCA1-201ENST00000309328 SLC16A10Q8TF71 515 aa23.09■■□□□ 1.29
SSSCA1-201ENST00000309328 ZNF428Q96B54 188 aa23.09■■□□□ 1.29
SSSCA1-201ENST00000309328 SPINK5Q9NQ38 1064 aaPredicted RBP23.09■■□□□ 1.29
SSSCA1-201ENST00000309328 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP23.08■■□□□ 1.29
SSSCA1-201ENST00000309328 R3HDM1Q15032 1099 aaKnown RBP23.08■■□□□ 1.29
SSSCA1-201ENST00000309328 TWISTNBQ3B726 338 aaPredicted RBP23.08■■□□□ 1.29
SSSCA1-201ENST00000309328 ZBTB1Q9Y2K1 713 aa23.08■■□□□ 1.29
SSSCA1-201ENST00000309328 LAMB4A4D0S4 1761 aa23.07■■□□□ 1.28
SSSCA1-201ENST00000309328 PRAMEF22A3QJZ6 481 aa23.07■■□□□ 1.28
SSSCA1-201ENST00000309328 CCDC30Q5VVM6 783 aa23.07■■□□□ 1.28
SSSCA1-201ENST00000309328 C8orf58Q8NAV2 365 aa23.07■■□□□ 1.28
SSSCA1-201ENST00000309328 EIF2S2P20042 333 aaKnown RBP23.06■■□□□ 1.28
SSSCA1-201ENST00000309328 EIF5P55010 431 aaKnown RBP23.06■■□□□ 1.28
SSSCA1-201ENST00000309328 DBF4Q9UBU7 674 aaPredicted RBP23.06■■□□□ 1.28
SSSCA1-201ENST00000309328 PNPLA7Q6ZV29 1317 aa23.06■■□□□ 1.28
SSSCA1-201ENST00000309328 QSER1Q2KHR3 1735 aa23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 RGL2O15211 777 aa23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 A1BGP04217 495 aa23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 CANXP27824 592 aaKnown RBP23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 RFC4P35249 363 aa23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 EXOSC9Q06265 439 aaKnown RBP23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 KRT24Q2M2I5 525 aa23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 DDX21Q9NR30 783 aaKnown RBP eCLIP23.05■■□□□ 1.28
SSSCA1-201ENST00000309328 COL15A1P39059 1388 aa23.04■■□□□ 1.28
SSSCA1-201ENST00000309328 STK31Q9BXU1 1019 aa23.04■■□□□ 1.28
SSSCA1-201ENST00000309328 PHF14O94880 888 aa23.03■■□□□ 1.28
SSSCA1-201ENST00000309328 CDCA7LQ96GN5 454 aa23.03■■□□□ 1.28
SSSCA1-201ENST00000309328 HYPKQ9NX55 129 aa23.03■■□□□ 1.28
SSSCA1-201ENST00000309328 ELL2O00472 640 aaPredicted RBP23.02■■□□□ 1.28
SSSCA1-201ENST00000309328 TSPYL6Q8N831 410 aa23.02■■□□□ 1.28
SSSCA1-201ENST00000309328 NBPF26B4DH59 902 aa23.01■■□□□ 1.27
SSSCA1-201ENST00000309328 ZPR1O75312 459 aa23.01■■□□□ 1.27
SSSCA1-201ENST00000309328 VAMP4O75379 141 aa23.01■■□□□ 1.27
SSSCA1-201ENST00000309328 NBPF10Q6P3W6 841 aaKnown RBP23.01■■□□□ 1.27
SSSCA1-201ENST00000309328 COL23A1Q86Y22 540 aaPredicted RBP23.01■■□□□ 1.27
SSSCA1-201ENST00000309328 NBPF15Q8N660 670 aa23.01■■□□□ 1.27
SSSCA1-201ENST00000309328 ARHGEF1Q92888 912 aaKnown RBP23.01■■□□□ 1.27
SSSCA1-201ENST00000309328 UBR3Q6ZT12 1888 aa23■■□□□ 1.27
SSSCA1-201ENST00000309328 MSH5O43196 834 aa23■■□□□ 1.27
SSSCA1-201ENST00000309328 NARFQ9UHQ1 456 aa23■■□□□ 1.27
SSSCA1-201ENST00000309328 MYH14Q7Z406 1995 aaKnown RBP23■■□□□ 1.27
SSSCA1-201ENST00000309328 PSDA5PKW4 1024 aaPredicted RBP22.99■■□□□ 1.27
SSSCA1-201ENST00000309328 MTFR1LQ9H019 292 aa22.99■■□□□ 1.27
SSSCA1-201ENST00000309328 CHPF2Q9P2E5 772 aa22.99■■□□□ 1.27
SSSCA1-201ENST00000309328 USP42Q9H9J4 1324 aaKnown RBP22.99■■□□□ 1.27
SSSCA1-201ENST00000309328 PDIA6Q15084 440 aa22.98■■□□□ 1.27
SSSCA1-201ENST00000309328 KIF6Q6ZMV9 814 aa22.98■■□□□ 1.27
SSSCA1-201ENST00000309328 ZNF652Q9Y2D9 606 aa22.98■■□□□ 1.27
SSSCA1-201ENST00000309328 ZNF330Q9Y3S2 320 aaPredicted RBP22.98■■□□□ 1.27
SSSCA1-201ENST00000309328 MYL6BP14649 208 aa22.97■■□□□ 1.27
SSSCA1-201ENST00000309328 AMIGO3Q86WK7 504 aa22.97■■□□□ 1.27
SSSCA1-201ENST00000309328 DZIP3Q86Y13 1208 aaKnown RBP22.97■■□□□ 1.27
SSSCA1-201ENST00000309328 NLGN1Q8N2Q7 840 aa22.97■■□□□ 1.27
SSSCA1-201ENST00000309328 ERVV-1B6SEH8 477 aa22.96■■□□□ 1.27
SSSCA1-201ENST00000309328 CLEC4GQ6UXB4 293 aa22.96■■□□□ 1.27
SSSCA1-201ENST00000309328 NECTIN2Q92692 538 aa22.96■■□□□ 1.27
SSSCA1-201ENST00000309328 ALDH1L2Q3SY69 923 aa22.95■■□□□ 1.26
SSSCA1-201ENST00000309328 LRP10Q7Z4F1 713 aa22.95■■□□□ 1.26
SSSCA1-201ENST00000309328 DDX58O95786 925 aaKnown RBP22.94■■□□□ 1.26
SSSCA1-201ENST00000309328 PIP4K2AP48426 406 aaPredicted RBP22.93■■□□□ 1.26
SSSCA1-201ENST00000309328 ARXQ96QS3 562 aa22.93■■□□□ 1.26
SSSCA1-201ENST00000309328 CASZ1Q86V15 1759 aa22.93■■□□□ 1.26
SSSCA1-201ENST00000309328 TUBGCP6Q96RT7 1819 aa22.92■■□□□ 1.26
SSSCA1-201ENST00000309328 MAP3K15Q6ZN16 1313 aa22.92■■□□□ 1.26
SSSCA1-201ENST00000309328 CAMTA2O94983 1202 aa22.92■■□□□ 1.26
SSSCA1-201ENST00000309328 GYS1P13807 737 aa22.92■■□□□ 1.26
SSSCA1-201ENST00000309328 PROSER3Q2NL68 480 aa22.92■■□□□ 1.26
SSSCA1-201ENST00000309328 SPON1Q9HCB6 807 aa22.92■■□□□ 1.26
SSSCA1-201ENST00000309328 SLC4A2P04920 1241 aa22.91■■□□□ 1.26
SSSCA1-201ENST00000309328 POLD1P28340 1107 aa22.91■■□□□ 1.26
SSSCA1-201ENST00000309328 USPL1Q5W0Q7 1092 aa22.91■■□□□ 1.26
SSSCA1-201ENST00000309328 COPS6Q7L5N1 327 aa22.91■■□□□ 1.26
SSSCA1-201ENST00000309328 XAGE3Q8WTP9 111 aa22.91■■□□□ 1.26
SSSCA1-201ENST00000309328 YTHDC1Q96MU7 727 aaKnown RBP22.91■■□□□ 1.26
SSSCA1-201ENST00000309328 TBC1D2BQ9UPU7 963 aa22.91■■□□□ 1.26
SSSCA1-201ENST00000309328 HSP90AB3PQ58FF7 597 aa22.9■■□□□ 1.26
SSSCA1-201ENST00000309328 ZBTB7AO95365 584 aa22.89■■□□□ 1.25
SSSCA1-201ENST00000309328 PLBD2Q8NHP8 589 aa22.89■■□□□ 1.25
SSSCA1-201ENST00000309328 PDGFDQ9GZP0 370 aaPredicted RBP22.89■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms