RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 CCDC150Q8NCX0 1101 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 EBAG9O00559 213 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 ZNF428Q96B54 188 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 CABP1Q9NZU7 370 aa12.12□□□□□ -0.47
VCL-201ENST00000211998 SMC1AQ14683 1233 aaKnown RBP12.11□□□□□ -0.47
VCL-201ENST00000211998 C8orf34Q49A92 452 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 CDK5RAP3Q96JB5 506 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.11□□□□□ -0.478e-7■■■■■ 34.2
VCL-201ENST00000211998 STX1AQ16623 288 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 STRN4Q9NRL3 753 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 SUPT6HQ7KZ85 1726 aaKnown RBP12.11□□□□□ -0.47
VCL-201ENST00000211998 SPA17Q15506 151 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 ANKLE2Q86XL3 938 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 CPLX3Q8WVH0 158 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 CPSF2Q9P2I0 782 aaKnown RBP12.11□□□□□ -0.47
VCL-201ENST00000211998 CLGNO14967 610 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 IGHDP01880 384 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 SYNJ1O43426 1573 aa12.11□□□□□ -0.47
VCL-201ENST00000211998 SYCP1Q15431 976 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 MYRIPQ8NFW9 859 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 SLC12A5Q9H2X9 1139 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 TOPBP1Q92547 1522 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 DAPK1P53355 1430 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 PAFAH1B1P43034 410 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 SPECC1LQ69YQ0 1117 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 TOM1L2Q6ZVM7 507 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 CCAR1Q8IX12 1150 aaKnown RBP12.1□□□□□ -0.47
VCL-201ENST00000211998 OTUD6BQ8N6M0 293 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 TOP2BQ02880 1626 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 GIGYF2Q6Y7W6 1299 aaKnown RBP12.1□□□□□ -0.47
VCL-201ENST00000211998 NBPF11Q86T75 865 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 NAA25Q14CX7 972 aa12.1□□□□□ -0.47
VCL-201ENST00000211998 HMGXB3Q12766 1538 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 MAATS1Q7Z4T9 603 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 SPECC1Q5M775 1068 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 SNAPC4Q5SXM2 1469 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 TIAM1Q13009 1591 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 DCAF8L1A6NGE4 600 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 MSL1Q68DK7 614 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 TRIM22Q8IYM9 498 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 SCLT1Q96NL6 688 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 PRXQ9BXM0 1461 aa12.09□□□□□ -0.47
VCL-201ENST00000211998 ZBTB9Q96C00 473 aa12.08□□□□□ -0.47
VCL-201ENST00000211998 STX6O43752 255 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 HSF2BPO75031 334 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 TBC1D9Q6ZT07 1266 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 BANK1Q8NDB2 785 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 MTMR7Q9Y216 660 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.08□□□□□ -0.48
VCL-201ENST00000211998 FCHSD2O94868 740 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 CAVIN2O95810 425 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 ATRIPQ8WXE1 791 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 GOPCQ9HD26 462 aa12.08□□□□□ -0.48
VCL-201ENST00000211998 A0A1B0GUA9 196 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 RIOK3O14730 519 aaKnown RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 MX1P20591 662 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 SH2B1Q9NRF2 756 aaPredicted RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 TFIP11Q9UBB9 837 aaKnown RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 HLTFQ14527 1009 aaKnown RBP eCLIP12.07□□□□□ -0.48
VCL-201ENST00000211998 CCDC57Q2TAC2 916 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 WWC2Q6AWC2 1192 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 KLHL10Q6JEL2 608 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 RPAP2Q8IXW5 612 aaPredicted RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 FAM200AQ8TCP9 573 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 RSRC1Q96IZ7 334 aaKnown RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 RNF216Q9NWF9 866 aaPredicted RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 HYPKQ9NX55 129 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 PHACTR2O75167 634 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 PTGS1P23219 599 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 DNA2P51530 1060 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 RARSP54136 660 aaKnown RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 LIMCH1Q9UPQ0 1083 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 LRPPRCP42704 1394 aaKnown RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 GCOM1H8Y6P7 765 aaPredicted RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 MYZAPP0CAP1 466 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 RAB3GAP1Q15042 981 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 ANO6Q4KMQ2 910 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 NUP88Q99567 741 aaPredicted RBP12.07□□□□□ -0.48
VCL-201ENST00000211998 BIN1O00499 593 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 CCDC121Q6ZUS5 278 aa12.07□□□□□ -0.48
VCL-201ENST00000211998 POLA1P09884 1462 aaPredicted RBP12.06□□□□□ -0.48
VCL-201ENST00000211998 CCDC178Q5BJE1 867 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 IL1RAPL2Q9NP60 686 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 CCDC141Q6ZP82 1450 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 CTAGE15A4D2H0 777 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 SMARCA5O60264 1052 aaPredicted RBP12.06□□□□□ -0.48
VCL-201ENST00000211998 CTAGE8P0CG41 777 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 KRT32Q14532 448 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 CTAGE6Q86UF2 777 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 USP48Q86UV5 1035 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 CTAGE4Q8IX94 777 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 FSIP1Q8NA03 581 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 GOLGA1Q92805 767 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 MPHOSPH8Q99549 860 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 PHF23Q9BUL5 403 aaPredicted RBP12.06□□□□□ -0.48
VCL-201ENST00000211998 SIL1Q9H173 461 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 KRT18P05783 430 aaKnown RBP12.06□□□□□ -0.48
VCL-201ENST00000211998 SF3B2Q13435 895 aaKnown RBP12.06□□□□□ -0.48
VCL-201ENST00000211998 DMTNQ08495 405 aa12.06□□□□□ -0.48
VCL-201ENST00000211998 PRPF40BQ6NWY9 871 aaKnown RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms