RNA–Protein interactions for RNA: ENST00000601091.5

LIG1-220, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 3,957 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-220ENST00000601091 FAM25GB3EWG6 89 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 AP3D1O14617 1153 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 B4GAT1O43505 415 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 SOCS5O75159 536 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 EEDO75530 441 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 SELPP16109 830 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 UGT1A1P22309 533 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 UGT1A4P22310 534 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 UGT1A3P35503 534 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 UGT1A5P35504 534 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 GGT5P36269 586 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 HPCAL1P37235 193 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 IDH2P48735 452 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 GRSF1Q12849 480 aaKnown RBP eCLIP10.1□□□□□ -0.79
LIG1-220ENST00000601091 XKR6Q5GH73 641 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 FAM76BQ5HYJ3 339 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 FGD3Q5JSP0 725 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 TRIM69Q86WT6 500 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 CLDN19Q8N6F1 224 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 OR5K1Q8NHB7 308 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 TFAP2CQ92754 450 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 TRMT2BQ96GJ1 504 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 MUS81Q96NY9 551 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 KATNBL1Q9H079 304 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 RPF2Q9H7B2 306 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 MRPL17Q9NRX2 175 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 TMEM30AQ9NV96 361 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 DHRS7Q9Y394 339 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 DOCK1Q14185 1865 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 ARGFXA6NJG6 315 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 H0YAE9 185 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 SEC24AO95486 1093 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 SERPINA1P01009 418 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 JUNDP17535 347 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 MYF6P23409 242 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 F8A1P23610 371 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 MAPK3P27361 379 aaPredicted RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 TRAF3Q13114 568 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 KCNAB2Q13303 367 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 ANGPT1Q15389 498 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 C11orf88Q6PI97 169 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 SLCO6A1Q86UG4 719 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 ZDHHC21Q8IVQ6 265 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 GALNT12Q8IXK2 581 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 PELI3Q8N2H9 469 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 SCN1AP35498 2009 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 J3KRW8 73 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 PRSS56P0CW18 603 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 TAGLN2P37802 199 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 NSG1P42857 185 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 GDF5P43026 501 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 ACLYP53396 1101 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 CRHR2Q13324 411 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 KRR1Q13601 381 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 ZNF605Q86T29 641 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 OR56B2PQ8NGI1 322 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 ARRDC2Q8TBH0 407 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 WDR12Q9GZL7 423 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 C6orf62Q9GZU0 229 aaPredicted RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 XKR8Q9H6D3 395 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 THUMPD1Q9NXG2 353 aaKnown RBP10.1□□□□□ -0.79
LIG1-220ENST00000601091 CEPT1Q9Y6K0 416 aa10.1□□□□□ -0.79
LIG1-220ENST00000601091 TRIM24O15164 1050 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 PGLSO95336 258 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ALPIP09923 528 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ALDOCP09972 364 aaKnown RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 ITPKAP23677 461 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ALDH4A1P30038 563 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CRATP43155 626 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 GPR68Q15743 365 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 GFOD2Q3B7J2 385 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ZNF829Q3KNS6 432 aaPredicted RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 GPR33Q49SQ1 333 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ZNF773Q6PK81 442 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 C16orf62Q7Z3J2 963 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 MFSD6LQ8IWD5 586 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 OR52N1Q8NH53 320 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 TESCQ96BS2 214 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 ZHX1-C8orf76Q96EF9 292 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 AURKBQ96GD4 344 aaPredicted RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 BIRC8Q96P09 236 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 MIEF1Q9NQG6 463 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 PDP1Q9P0J1 537 aaPredicted RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 PSME2Q9UL46 239 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 RUVBL1Q9Y265 456 aaKnown RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 TRBV23-1A0A0A0MS06 115 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 MROH6A6NGR9 719 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 I6L893 689 aaPredicted RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 SUV39H1O43463 412 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CIDEAO60543 219 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 WBP4O75554 376 aaKnown RBP10.09□□□□□ -0.79
LIG1-220ENST00000601091 SBK3P0C264 359 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 DDCP20711 480 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 UQCRC1P31930 480 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 SP3Q02447 781 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 SPANXN4Q5MJ08 99 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 PSAPL1Q6NUJ1 521 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 BHLHB9Q6PI77 547 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 CFAP77Q6ZQR2 320 aa10.09□□□□□ -0.79
LIG1-220ENST00000601091 C1orf122Q6ZSJ8 110 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms