RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 CD200R1Q8TD46 325 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 ZNF480Q8WV37 535 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 ZDHHC19Q8WVZ1 309 aaPredicted RBP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 TM9SF4Q92544 642 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 AARSD1Q9BTE6 412 aaKnown RBP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 ACAT2Q9BWD1 397 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 TSR3Q9UJK0 312 aaKnown RBP16.94■□□□□ 0.3
HDDC3-201ENST00000330334 CDC23Q9UJX2 597 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 CDC14AQ9UNH5 594 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 HS3ST3B1Q9Y662 390 aa16.94■□□□□ 0.3
HDDC3-201ENST00000330334 DOPEY2Q9Y3R5 2298 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 CCDC88CQ9P219 2028 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 H0YGG7 62 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 TXNDC9O14530 226 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 SOCS6O14544 535 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 NRP2O60462 931 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 MED26O95402 600 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 ERVK-10P10266 1014 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 EZRP15311 586 aaKnown RBP16.93■□□□□ 0.3
HDDC3-201ENST00000330334 CARSP49589 748 aaKnown RBP16.93■□□□□ 0.3
HDDC3-201ENST00000330334 ARF3P61204 181 aaPredicted RBP16.93■□□□□ 0.3
HDDC3-201ENST00000330334 CRYMQ14894 314 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 PRAMEF13Q5VWM6 474 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 UGT3A1Q6NUS8 523 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 KIRREL2Q6UWL6 708 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 KCNMB4Q86W47 210 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 TMEM151BQ8IW70 566 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 LRRC56Q8IYG6 542 aaPredicted RBP16.93■□□□□ 0.3
HDDC3-201ENST00000330334 OR2A5Q96R48 311 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 GPR21Q99679 349 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 EBNA1BP2Q99848 306 aaKnown RBP16.93■□□□□ 0.3
HDDC3-201ENST00000330334 CTSFQ9UBX1 484 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 ZNF282Q9UDV7 671 aaPredicted RBP16.93■□□□□ 0.3
HDDC3-201ENST00000330334 FBXL4Q9UKA2 621 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 B3GNT3Q9Y2A9 372 aa16.93■□□□□ 0.3
HDDC3-201ENST00000330334 DNALI1O14645 258 aaPredicted RBP16.92■□□□□ 0.3
HDDC3-201ENST00000330334 EIF2S1P05198 315 aaKnown RBP16.92■□□□□ 0.3
HDDC3-201ENST00000330334 HRH2P25021 359 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 IVDP26440 423 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 OCA2Q04671 838 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 CUL1Q13616 776 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 RAPSNQ13702 412 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 KIAA0408Q6ZU52 694 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 GALNT7Q86SF2 657 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 CNTN4Q8IWV2 1026 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 COL26A1Q96A83 441 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 C10orf90Q96M02 699 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 MFRPQ9BY79 579 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 IARS2Q9NSE4 1012 aaKnown RBP16.92■□□□□ 0.3
HDDC3-201ENST00000330334 TAC3Q9UHF0 121 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 MAU2Q9Y6X3 613 aa16.92■□□□□ 0.3
HDDC3-201ENST00000330334 PCM1Q15154 2024 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 SMAPO00193 183 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 PRPF4O43172 522 aaKnown RBP eCLIP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 ZGLP1P0C6A0 271 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 ATXN8OSP0DMR3 200 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 MPP1Q00013 466 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 TIAL1Q01085 375 aaKnown RBP eCLIP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 DSG2Q14126 1118 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 PLEKHN1Q494U1 663 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 SPANXN3Q5MJ09 141 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 IGFL2Q6UWQ7 119 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 SYDE1Q6ZW31 735 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 UBE2R2Q712K3 238 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 ZADH2Q8N4Q0 377 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 ARHGEF39Q8N4T4 335 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 CSNK1A1LQ8N752 337 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 OR11G2Q8NGC1 345 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 STT3BQ8TCJ2 826 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 MCOLN3Q8TDD5 553 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 RERGQ96A58 199 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 MIEF2Q96C03 454 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 CABS1Q96KC9 395 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 CCDC138Q96M89 665 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 PCBD2Q9H0N5 130 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 DDX47Q9H0S4 455 aaKnown RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 KCNF1Q9H3M0 494 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 SOX17Q9H6I2 414 aaPredicted RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 TRMT1Q9NXH9 659 aaKnown RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 TAS2R13Q9NYV9 303 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 ASIC3Q9UHC3 531 aa16.91■□□□□ 0.3
HDDC3-201ENST00000330334 TRMT6Q9UJA5 497 aaKnown RBP16.91■□□□□ 0.3
HDDC3-201ENST00000330334 NAV2Q8IVL1 2488 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 KCNE1BA0A087WTH5 132 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 A0A1W2PQ72 361 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 PCDH17O14917 1159 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 SLC16A5O15375 505 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 SYF2O95926 243 aaKnown RBP16.9■□□□□ 0.3
HDDC3-201ENST00000330334 C8GP07360 202 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 F7P08709 466 aaPredicted RBP16.9■□□□□ 0.3
HDDC3-201ENST00000330334 IMPA1P29218 277 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 SLC26A3P40879 764 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 RGS4P49798 205 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 KLC1Q07866 573 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 DHX9Q08211 1270 aaKnown RBP16.9■□□□□ 0.3
HDDC3-201ENST00000330334 FAM53BQ14153 422 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 RBBP7Q16576 425 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 TUBB8Q3ZCM7 444 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 ATG9BQ674R7 924 aa16.9■□□□□ 0.3
HDDC3-201ENST00000330334 Q6ZS92 163 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms