RNA–Protein interactions for RNA: YDL212W

SHR3, Transcript of Endoplasmic reticulum packaging chaperone, yeastyeast

Gene SHR3, Length 633 nt, Biotype protein coding, Subcellular localisation Mitochondria .

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SHR3YDL212W YPL260WQ08977 551 aa6.59□□□□□ -1.35
SHR3YDL212W YER152CP10356 443 aa6.58□□□□□ -1.36
SHR3YDL212W SNF5P18480 905 aa6.58□□□□□ -1.36
SHR3YDL212W MDL2P33311 773 aa6.58□□□□□ -1.36
SHR3YDL212W POL12P38121 705 aaPredicted RBP6.58□□□□□ -1.36
SHR3YDL212W TMA46Q12000 345 aaKnown RBP6.58□□□□□ -1.36
SHR3YDL212W PUF4P25339 888 aaKnown RBP RIP-Chip data6.57□□□□□ -1.36not detected
SHR3YDL212W LYP1P32487 611 aa6.57□□□□□ -1.36
SHR3YDL212W MOT2P34909 587 aaKnown RBP6.57□□□□□ -1.36
SHR3YDL212W YGR053CP53234 283 aa6.57□□□□□ -1.36
SHR3YDL212W SVF1Q05515 481 aa6.57□□□□□ -1.36
SHR3YDL212W PIN2Q12057 282 aa6.57□□□□□ -1.36
SHR3YDL212W YPL066WQ12194 479 aa6.57□□□□□ -1.36
SHR3YDL212W SRO9P25567 434 aaKnown RBP6.56□□□□□ -1.36
SHR3YDL212W BAP2P38084 609 aa6.56□□□□□ -1.36
SHR3YDL212W RPN3P40016 523 aaKnown RBP6.56□□□□□ -1.36
SHR3YDL212W TNA1P53322 534 aa6.56□□□□□ -1.36
SHR3YDL212W ORC3P54790 616 aa6.56□□□□□ -1.36
SHR3YDL212W HOS3Q02959 697 aaKnown RBP6.56□□□□□ -1.36
SHR3YDL212W GDE1Q02979 1223 aa6.56□□□□□ -1.36
SHR3YDL212W ESC2Q06340 456 aa6.56□□□□□ -1.36
SHR3YDL212W DFG16Q99234 619 aa6.56□□□□□ -1.36
SHR3YDL212W MCM7P38132 845 aa6.55□□□□□ -1.36
SHR3YDL212W TYW3P53177 273 aa6.55□□□□□ -1.36
SHR3YDL212W RSC58Q07979 502 aa6.55□□□□□ -1.36
SHR3YDL212W COQ4O13525 335 aa6.54□□□□□ -1.36
SHR3YDL212W INO1P11986 533 aa6.54□□□□□ -1.36
SHR3YDL212W AIM26P32858 118 aa6.54□□□□□ -1.36
SHR3YDL212W MAD1P40957 749 aa6.54□□□□□ -1.36
SHR3YDL212W HNT2P49775 206 aa6.54□□□□□ -1.36
SHR3YDL212W CLN2P20438 545 aa6.53□□□□□ -1.36
SHR3YDL212W SEG2P34250 1132 aa6.53□□□□□ -1.36
SHR3YDL212W YDL177CQ12257 170 aa6.53□□□□□ -1.36
SHR3YDL212W AVT1P47082 602 aa6.52□□□□□ -1.37
SHR3YDL212W UBP3Q01477 912 aaKnown RBP RIP-Chip data6.52□□□□□ -1.37not detected
SHR3YDL212W YLR225CQ05948 407 aaKnown RBP6.52□□□□□ -1.37
SHR3YDL212W GNT1Q12096 491 aa6.52□□□□□ -1.37
SHR3YDL212W DBP2P24783 546 aaKnown RBP6.51□□□□□ -1.37
SHR3YDL212W PIK1P39104 1066 aa6.51□□□□□ -1.37
SHR3YDL212W ABD1P32783 436 aaPredicted RBP6.5□□□□□ -1.37
SHR3YDL212W YKL069WP36088 180 aa6.5□□□□□ -1.37
SHR3YDL212W ABZ1P37254 787 aaPredicted RBP6.5□□□□□ -1.37
SHR3YDL212W CCZ1P38273 704 aa6.5□□□□□ -1.37
SHR3YDL212W MXR1P40029 184 aa6.5□□□□□ -1.37
SHR3YDL212W CWC24P53769 259 aa6.5□□□□□ -1.37
SHR3YDL212W ALD6P54115 500 aaKnown RBP6.5□□□□□ -1.37
SHR3YDL212W RPL11AP0C0W9 174 aaKnown RBP6.49□□□□□ -1.37
SHR3YDL212W ETP1P38748 585 aaKnown RBP6.49□□□□□ -1.37
SHR3YDL212W SIP5P40210 489 aaKnown RBP6.49□□□□□ -1.37
SHR3YDL212W YGL176CP46945 554 aa6.49□□□□□ -1.37
SHR3YDL212W RKM4Q12504 494 aa6.49□□□□□ -1.37
SHR3YDL212W RPL11BQ3E757 174 aaPredicted RBP6.49□□□□□ -1.37
SHR3YDL212W PRI2P20457 528 aa6.48□□□□□ -1.37
SHR3YDL212W BAS1P22035 811 aa6.48□□□□□ -1.37
SHR3YDL212W NAP1P25293 417 aaKnown RBP6.48□□□□□ -1.37
SHR3YDL212W VAC8P39968 578 aa6.48□□□□□ -1.37
SHR3YDL212W ECL1P48235 211 aa6.48□□□□□ -1.37
SHR3YDL212W SPO20Q04359 397 aa6.48□□□□□ -1.37
SHR3YDL212W RNQ1P25367 405 aa6.47□□□□□ -1.37
SHR3YDL212W ELM1P32801 640 aa6.47□□□□□ -1.37
SHR3YDL212W YKL107WP34251 309 aa6.47□□□□□ -1.37
SHR3YDL212W TSA1P34760 196 aaKnown RBP6.47□□□□□ -1.37
SHR3YDL212W PNT1P38969 423 aa6.47□□□□□ -1.37
SHR3YDL212W CDA2Q06703 312 aa6.47□□□□□ -1.37
SHR3YDL212W NBA1Q08229 501 aaKnown RBP6.47□□□□□ -1.37
SHR3YDL212W FAL1Q12099 399 aaKnown RBP6.47□□□□□ -1.37
SHR3YDL212W SPS1P08458 490 aa6.46□□□□□ -1.38
SHR3YDL212W OPI10Q08202 246 aa6.46□□□□□ -1.38
SHR3YDL212W GAS1P22146 559 aaKnown RBP6.45□□□□□ -1.38
SHR3YDL212W SLA2P33338 968 aa6.45□□□□□ -1.38
SHR3YDL212W SPP382Q06411 708 aaPredicted RBP6.45□□□□□ -1.38
SHR3YDL212W RSB1Q08417 382 aa6.45□□□□□ -1.38
SHR3YDL212W RIB2Q12362 591 aaKnown RBP6.45□□□□□ -1.38
SHR3YDL212W ACM1Q08981 209 aa6.44□□□□□ -1.38
SHR3YDL212W BI4P03879 638 aa6.43□□□□□ -1.38
SHR3YDL212W UGA2P38067 497 aa6.43□□□□□ -1.38
SHR3YDL212W SEC26P41810 973 aaKnown RBP6.43□□□□□ -1.38
SHR3YDL212W AGP1P25376 633 aa6.42□□□□□ -1.38
SHR3YDL212W SBA1P28707 216 aaKnown RBP6.42□□□□□ -1.38
SHR3YDL212W MBP1P39678 833 aa6.42□□□□□ -1.38
SHR3YDL212W MRPL22P53881 309 aa6.42□□□□□ -1.38
SHR3YDL212W MAP1Q01662 387 aaKnown RBP RIP-Chip data6.42□□□□□ -1.38not detected
SHR3YDL212W FOL2P51601 243 aaKnown RBP6.41□□□□□ -1.38
SHR3YDL212W YKL151CP36059 337 aa6.4□□□□□ -1.38
SHR3YDL212W VBA5P36172 582 aa6.4□□□□□ -1.38
SHR3YDL212W NIT1P40447 199 aa6.4□□□□□ -1.38
SHR3YDL212W SVS1Q12254 260 aa6.4□□□□□ -1.38
SHR3YDL212W SRM1P21827 482 aa6.39□□□□□ -1.39
SHR3YDL212W GEM1P39722 662 aa6.39□□□□□ -1.39
SHR3YDL212W SPF1P39986 1215 aaKnown RBP6.39□□□□□ -1.39
SHR3YDL212W IRC24P40580 263 aa6.39□□□□□ -1.39
SHR3YDL212W HRQ1Q05549 1077 aa6.39□□□□□ -1.39
SHR3YDL212W ATG13Q06628 738 aa6.39□□□□□ -1.39
SHR3YDL212W SSF2Q12153 453 aaPredicted RBP6.39□□□□□ -1.39
SHR3YDL212W CYC1P00044 109 aaPredicted RBP6.38□□□□□ -1.39
SHR3YDL212W ACE2P21192 770 aa6.38□□□□□ -1.39
SHR3YDL212W PIN4P34217 668 aaKnown RBP RIP-Chip data6.38□□□□□ -1.39not detected
SHR3YDL212W RFC5P38251 354 aa6.38□□□□□ -1.39
SHR3YDL212W AIM3P38266 947 aaKnown RBP6.38□□□□□ -1.39
SHR3YDL212W HFM1P51979 1187 aa6.38□□□□□ -1.39
Retrieved 100 of 5,963 RNA–protein pairs in 15.4 ms