RNA–Protein interactions for RNA: ENST00000642041.1

PHGDH-234, Transcript of phosphoglycerate dehydrogenase, humanhuman

Gene PHGDH, Length 943 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDH-234ENST00000642041 LTV1Q96GA3 475 aaPredicted RBP22.69■■□□□ 1.22
PHGDH-234ENST00000642041 GTF3C3Q9Y5Q9 886 aa22.69■■□□□ 1.22
PHGDH-234ENST00000642041 TAF1LQ8IZX4 1826 aa22.68■■□□□ 1.22
PHGDH-234ENST00000642041 SLC34A2O95436 690 aa22.68■■□□□ 1.22
PHGDH-234ENST00000642041 NUDCQ9Y266 331 aa22.68■■□□□ 1.22
PHGDH-234ENST00000642041 AMIGO3Q86WK7 504 aa22.67■■□□□ 1.22
PHGDH-234ENST00000642041 FYB1O15117 783 aa22.66■■□□□ 1.22
PHGDH-234ENST00000642041 AK7Q96M32 723 aa22.66■■□□□ 1.22
PHGDH-234ENST00000642041 ERICH6BQ5W0A0 696 aa22.65■■□□□ 1.22
PHGDH-234ENST00000642041 PALLDQ8WX93 1383 aa22.64■■□□□ 1.22
PHGDH-234ENST00000642041 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.64■■□□□ 1.21
PHGDH-234ENST00000642041 COG3Q96JB2 828 aa22.64■■□□□ 1.21
PHGDH-234ENST00000642041 GGNBP2Q9H3C7 697 aa22.64■■□□□ 1.21
PHGDH-234ENST00000642041 C4BP0C0L5 1744 aa22.63■■□□□ 1.21
PHGDH-234ENST00000642041 ARHGAP27Q6ZUM4 889 aa22.63■■□□□ 1.21
PHGDH-234ENST00000642041 MEGF6O75095 1541 aa22.62■■□□□ 1.21
PHGDH-234ENST00000642041 PHF14O94880 888 aa22.62■■□□□ 1.21
PHGDH-234ENST00000642041 BCS1LQ9Y276 419 aa22.62■■□□□ 1.21
PHGDH-234ENST00000642041 TOGARAM1Q9Y4F4 1720 aa22.62■■□□□ 1.21
PHGDH-234ENST00000642041 UBR3Q6ZT12 1888 aa22.62■■□□□ 1.21
PHGDH-234ENST00000642041 PXDNLA1KZ92 1463 aa22.61■■□□□ 1.21
PHGDH-234ENST00000642041 SSFA2P28290 1259 aa22.61■■□□□ 1.21
PHGDH-234ENST00000642041 TGFB2P61812 414 aa22.61■■□□□ 1.21
PHGDH-234ENST00000642041 SMG6Q86US8 1419 aaKnown RBP22.61■■□□□ 1.21
PHGDH-234ENST00000642041 SMIM5Q71RC9 77 aa22.6■■□□□ 1.21
PHGDH-234ENST00000642041 HSPA1AP0DMV8 641 aaKnown RBP22.59■■□□□ 1.21
PHGDH-234ENST00000642041 HSPA1BP0DMV9 641 aaKnown RBP22.59■■□□□ 1.21
PHGDH-234ENST00000642041 ADAMTS8Q9UP79 889 aa22.59■■□□□ 1.21
PHGDH-234ENST00000642041 PLEKHG2Q9H7P9 1386 aa22.59■■□□□ 1.21
PHGDH-234ENST00000642041 MTHFSP49914 203 aa22.58■■□□□ 1.21
PHGDH-234ENST00000642041 SMARCC1Q92922 1105 aaPredicted RBP22.58■■□□□ 1.21
PHGDH-234ENST00000642041 KIF13BQ9NQT8 1826 aa22.57■■□□□ 1.2
PHGDH-234ENST00000642041 HOXC9P31274 260 aa22.57■■□□□ 1.2
PHGDH-234ENST00000642041 C9orf131Q5VYM1 1079 aa22.57■■□□□ 1.2
PHGDH-234ENST00000642041 MPRIPQ6WCQ1 1025 aa22.57■■□□□ 1.2
PHGDH-234ENST00000642041 C10orf71Q711Q0 1435 aa22.57■■□□□ 1.2
PHGDH-234ENST00000642041 KDM2BQ8NHM5 1336 aa22.57■■□□□ 1.2
PHGDH-234ENST00000642041 A0A0G2JLW4 131 aa22.56■■□□□ 1.2
PHGDH-234ENST00000642041 KIAA1551Q9HCM1 1747 aa22.56■■□□□ 1.2
PHGDH-234ENST00000642041 RGPD2P0DJD1 1756 aa22.55■■□□□ 1.2
PHGDH-234ENST00000642041 MMP10P09238 476 aa22.55■■□□□ 1.2
PHGDH-234ENST00000642041 N4BP2Q86UW6 1770 aaPredicted RBP22.55■■□□□ 1.2
PHGDH-234ENST00000642041 SMC1BQ8NDV3 1235 aa22.54■■□□□ 1.2
PHGDH-234ENST00000642041 MAP3K19Q56UN5 1328 aa22.54■■□□□ 1.2
PHGDH-234ENST00000642041 FCHSD2O94868 740 aa22.53■■□□□ 1.2
PHGDH-234ENST00000642041 AMPHP49418 695 aa22.53■■□□□ 1.2
PHGDH-234ENST00000642041 RAPGEF4Q8WZA2 1011 aa22.53■■□□□ 1.2
PHGDH-234ENST00000642041 RRAGCQ9HB90 399 aa22.53■■□□□ 1.2
PHGDH-234ENST00000642041 KCPQ6ZWJ8 1503 aa22.52■■□□□ 1.2
PHGDH-234ENST00000642041 TNNT2P45379 298 aaPredicted RBP22.52■■□□□ 1.2
PHGDH-234ENST00000642041 NBPF6Q5VWK0 638 aa22.52■■□□□ 1.2
PHGDH-234ENST00000642041 NBPF4Q96M43 638 aa22.52■■□□□ 1.2
PHGDH-234ENST00000642041 RUNDC1Q96C34 613 aa22.51■■□□□ 1.19
PHGDH-234ENST00000642041 PCDH11XQ9BZA7 1347 aa22.51■■□□□ 1.19
PHGDH-234ENST00000642041 PCDH11YQ9BZA8 1340 aa22.51■■□□□ 1.19
PHGDH-234ENST00000642041 NEFMP07197 916 aa22.5■■□□□ 1.19
PHGDH-234ENST00000642041 DPEP1P16444 411 aa22.5■■□□□ 1.19
PHGDH-234ENST00000642041 LINC00116Q8NCU8 138 aa22.5■■□□□ 1.19
PHGDH-234ENST00000642041 TATP17735 454 aaPredicted RBP22.49■■□□□ 1.19
PHGDH-234ENST00000642041 DIAPH1O60610 1272 aaKnown RBP22.48■■□□□ 1.19
PHGDH-234ENST00000642041 LOC102724428A0A0B4J2F2 783 aa22.47■■□□□ 1.19
PHGDH-234ENST00000642041 GNPATO15228 680 aa22.47■■□□□ 1.19
PHGDH-234ENST00000642041 SIK1P57059 783 aa22.47■■□□□ 1.19
PHGDH-234ENST00000642041 USHBP1Q8N6Y0 703 aa22.47■■□□□ 1.19
PHGDH-234ENST00000642041 PIGBQ92521 554 aa22.47■■□□□ 1.19
PHGDH-234ENST00000642041 PKD1L3Q7Z443 1732 aa22.47■■□□□ 1.19
PHGDH-234ENST00000642041 ITGB4P16144 1822 aa22.47■■□□□ 1.19
PHGDH-234ENST00000642041 BRCA1P38398 1863 aaKnown RBP22.47■■□□□ 1.19
PHGDH-234ENST00000642041 TNRC6CQ9HCJ0 1690 aaKnown RBP22.46■■□□□ 1.19
PHGDH-234ENST00000642041 MAP2P11137 1827 aaKnown RBP22.46■■□□□ 1.19
PHGDH-234ENST00000642041 CCDC27Q2M243 656 aa22.46■■□□□ 1.19
PHGDH-234ENST00000642041 NLGN1Q8N2Q7 840 aa22.46■■□□□ 1.19
PHGDH-234ENST00000642041 CCDC87Q9NVE4 849 aa22.46■■□□□ 1.19
PHGDH-234ENST00000642041 RNF181Q9P0P0 153 aa22.46■■□□□ 1.19
PHGDH-234ENST00000642041 KIF24Q5T7B8 1368 aa22.46■■□□□ 1.19
PHGDH-234ENST00000642041 ARFGEF1Q9Y6D6 1849 aa22.45■■□□□ 1.19
PHGDH-234ENST00000642041 CYP27B1O15528 508 aa22.45■■□□□ 1.18
PHGDH-234ENST00000642041 FBLN1P23142 703 aa22.45■■□□□ 1.18
PHGDH-234ENST00000642041 GOLGA2Q08379 1002 aa22.45■■□□□ 1.18
PHGDH-234ENST00000642041 PCDH10Q9P2E7 1040 aa22.45■■□□□ 1.18
PHGDH-234ENST00000642041 RTL1A6NKG5 1358 aa22.44■■□□□ 1.18
PHGDH-234ENST00000642041 KCNA3P22001 575 aa22.44■■□□□ 1.18
PHGDH-234ENST00000642041 DCAF5Q96JK2 942 aa22.43■■□□□ 1.18
PHGDH-234ENST00000642041 PIM2Q9P1W9 311 aa22.42■■□□□ 1.18
PHGDH-234ENST00000642041 POLKQ9UBT6 870 aa22.42■■□□□ 1.18
PHGDH-234ENST00000642041 FLT4P35916 1363 aa22.41■■□□□ 1.18
PHGDH-234ENST00000642041 U2AF1L5P0DN76 240 aaPredicted RBP22.41■■□□□ 1.18
PHGDH-234ENST00000642041 U2AF1Q01081 240 aaKnown RBP eCLIP22.41■■□□□ 1.18
PHGDH-234ENST00000642041 ITPK1Q13572 414 aa22.41■■□□□ 1.18
PHGDH-234ENST00000642041 TRAPPC3LQ5T215 181 aa22.4■■□□□ 1.18
PHGDH-234ENST00000642041 WDR63Q8IWG1 891 aa22.4■■□□□ 1.18
PHGDH-234ENST00000642041 COL3A1P02461 1466 aaPredicted RBP22.4■■□□□ 1.18
PHGDH-234ENST00000642041 E9PSI1 815 aa22.39■■□□□ 1.17
PHGDH-234ENST00000642041 ATP6V1AP38606 617 aa22.39■■□□□ 1.17
PHGDH-234ENST00000642041 RRS1Q15050 365 aaKnown RBP22.39■■□□□ 1.17
PHGDH-234ENST00000642041 NKX1-1Q15270 411 aaPredicted RBP22.39■■□□□ 1.17
PHGDH-234ENST00000642041 DALRD3Q5D0E6 543 aaKnown RBP22.39■■□□□ 1.17
PHGDH-234ENST00000642041 SUPT16HQ9Y5B9 1047 aaKnown RBP22.39■■□□□ 1.17
PHGDH-234ENST00000642041 EMILIN1Q9Y6C2 1016 aa22.39■■□□□ 1.17
PHGDH-234ENST00000642041 ZNF521Q96K83 1311 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms