RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ATXN7L1Q9ULK2 861 aaPredicted RBP2.24□□□□□ -2.05
VPS35-212ENST00000640313 COL17A1Q9UMD9 1497 aaPredicted RBP2.23□□□□□ -2.05
VPS35-212ENST00000640313 MEN1O00255 615 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 WASLO00401 505 aaPredicted RBP2.23□□□□□ -2.05
VPS35-212ENST00000640313 PAX4O43316 350 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 H2AFB1P0C5Y9 115 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 H2AFB2P0C5Z0 115 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 CTBSQ01459 385 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 CLN3Q13286 438 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 CSPP1Q1MSJ5 1256 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 RTL5Q5HYW3 569 aaPredicted RBP2.23□□□□□ -2.05
VPS35-212ENST00000640313 MCTP1Q6DN14 999 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 CHSY3Q70JA7 882 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 TAS1R3Q7RTX0 852 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 TRIM11Q96F44 468 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 NLRP3Q96P20 1036 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 PLVAPQ9BX97 442 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 KRTAP4-2Q9BYR5 136 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 CYLDQ9NQC7 956 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 NDFIP2Q9NV92 336 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 LIMD1Q9UGP4 676 aa2.23□□□□□ -2.05
VPS35-212ENST00000640313 A0A1B0GTH6 734 aa2.22□□□□□ -2.05
VPS35-212ENST00000640313 SPDYE3A6NKU9 549 aa2.22□□□□□ -2.05
VPS35-212ENST00000640313 FGFR3P22607 806 aa2.22□□□□□ -2.05
VPS35-212ENST00000640313 RAB15P59190 212 aa2.22□□□□□ -2.05
VPS35-212ENST00000640313 CTDSPL2Q05D32 466 aa2.22□□□□□ -2.05
VPS35-212ENST00000640313 MYSM1Q5VVJ2 828 aa2.22□□□□□ -2.05
VPS35-212ENST00000640313 DZIP3Q86Y13 1208 aaKnown RBP2.22□□□□□ -2.05
VPS35-212ENST00000640313 NEURL1BA8MQ27 555 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 BNIP3LO60238 219 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 APBA3O96018 575 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 ERVK-9P63128 1117 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 FZD5Q13467 585 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 PRRT3Q5FWE3 981 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 EFHC2Q5JST6 749 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 BARGINQ6ZT62 677 aa2.21□□□□□ -2.06
VPS35-212ENST00000640313 AVENQ9NQS1 362 aaPredicted RBP2.21□□□□□ -2.06
VPS35-212ENST00000640313 CSB-PGBD3P0DP91 1061 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 ELNP15502 786 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 ADH6P28332 368 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 NR6A1Q15406 480 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 AMER1Q5JTC6 1135 aaPredicted RBP2.2□□□□□ -2.06
VPS35-212ENST00000640313 FAM182BQ5T319 152 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 CC2D2BQ6DHV5 1058 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 FIGNL1Q6PIW4 674 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 CYP2U1Q7Z449 544 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 PARP9Q8IXQ6 854 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 PGBD3Q8N328 593 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 LRRN4Q8WUT4 740 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 ABHD17AQ96GS6 310 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 NACC1Q96RE7 527 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 CRISPLD1Q9H336 500 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 GPAMQ9HCL2 828 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 KLF15Q9UIH9 416 aa2.2□□□□□ -2.06
VPS35-212ENST00000640313 TRAK2O60296 914 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 GIGYF1O75420 1035 aaPredicted RBP2.19□□□□□ -2.06
VPS35-212ENST00000640313 MSX1P28360 303 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 CENPCQ03188 943 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 FCHSD1Q86WN1 690 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 PNMA1Q8ND90 353 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 ESYT1Q9BSJ8 1104 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 RUBCNLQ9H714 662 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 PRDM6Q9NQX0 595 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 RNF112Q9ULX5 631 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 PCDHGC4Q9Y5F7 938 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 HRH3Q9Y5N1 445 aa2.19□□□□□ -2.06
VPS35-212ENST00000640313 C9orf172C9J069 976 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 ZMYND10O75800 440 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 GNRH1P01148 92 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 PHKA2P46019 1235 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 CLK2P49760 499 aaKnown RBP2.18□□□□□ -2.06
VPS35-212ENST00000640313 TRIM28Q13263 835 aaKnown RBP2.18□□□□□ -2.06
VPS35-212ENST00000640313 COL9A3Q14050 684 aaPredicted RBP2.18□□□□□ -2.06
VPS35-212ENST00000640313 RNF20Q5VTR2 975 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 NLRP8Q86W28 1048 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 CNKSR1Q969H4 720 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 XAGE2Q96GT9 111 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 MDFIQ99750 246 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 ZCCHC2Q9C0B9 1178 aaKnown RBP2.18□□□□□ -2.06
VPS35-212ENST00000640313 OSBPL3Q9H4L5 887 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 ARHGEF10LQ9HCE6 1279 aa2.18□□□□□ -2.06
VPS35-212ENST00000640313 DNAAF2Q9NVR5 837 aaKnown RBP2.18□□□□□ -2.06
VPS35-212ENST00000640313 ELOA3CA0A087WX78 387 aaPredicted RBP2.17□□□□□ -2.06
VPS35-212ENST00000640313 ELOA3DA6NLF2 546 aaPredicted RBP2.17□□□□□ -2.06
VPS35-212ENST00000640313 TRIM66O15016 1216 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 IL2RAP01589 272 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 TNP2Q05952 138 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 ADGRE1Q14246 886 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 ELOA3BQ3SY89 546 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 C4orf17Q53FE4 359 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 GNASQ5JWF2 1037 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 ZNF468Q5VIY5 522 aaPredicted RBP2.17□□□□□ -2.06
VPS35-212ENST00000640313 DHX30Q7L2E3 1194 aaKnown RBP eCLIP2.17□□□□□ -2.06
VPS35-212ENST00000640313 ELOA3Q8NG57 546 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 C1orf216Q8TAB5 229 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 ZSCAN10Q96SZ4 725 aaPredicted RBP2.17□□□□□ -2.06
VPS35-212ENST00000640313 FHDC1Q9C0D6 1143 aaPredicted RBP2.17□□□□□ -2.06
VPS35-212ENST00000640313 RSPH6AQ9H0K4 717 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 HCN2Q9UL51 889 aa2.17□□□□□ -2.06
VPS35-212ENST00000640313 ATXN7O15265 892 aaPredicted RBP2.16□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms