RNA–Protein interactions for RNA: ENST00000617771.5

VEGFA-228, Transcript of vascular endothelial growth factor A, human

TSL 1 (best) BASIC

Gene VEGFA, Length 1,116 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VEGFA-228	ENST00000617771	COL24A1	Q17RW2	1714 aa		34.02	■■■■□ 3.04
VEGFA-228	ENST00000617771	ATP6V1A	P38606	617 aa		34.02	■■■■□ 3.04
VEGFA-228	ENST00000617771	MAP3K5	Q99683	1374 aa		34.01	■■■■□ 3.04
VEGFA-228	ENST00000617771	LINC00116	Q8NCU8	138 aa		34	■■■■□ 3.03
VEGFA-228	ENST00000617771	AKAP4	Q5JQC9	854 aa		33.99	■■■■□ 3.03
VEGFA-228	ENST00000617771	ITPK1	Q13572	414 aa		33.98	■■■■□ 3.03
VEGFA-228	ENST00000617771	COL3A1	P02461	1466 aa	Predicted RBP	33.98	■■■■□ 3.03
VEGFA-228	ENST00000617771	RBM42	Q9BTD8	480 aa	Known RBP	33.96	■■■■□ 3.03
VEGFA-228	ENST00000617771	SSFA2	P28290	1259 aa		33.95	■■■■□ 3.03
VEGFA-228	ENST00000617771	U2SURP	O15042	1029 aa	Known RBP	33.94	■■■■□ 3.02
VEGFA-228	ENST00000617771	PHF14	O94880	888 aa		33.94	■■■■□ 3.02
VEGFA-228	ENST00000617771	NFATC2IP	Q8NCF5	419 aa		33.94	■■■■□ 3.02
VEGFA-228	ENST00000617771	CFAP53	Q96M91	514 aa		33.94	■■■■□ 3.02
VEGFA-228	ENST00000617771	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	33.93	■■■■□ 3.02
VEGFA-228	ENST00000617771	MSL1	Q68DK7	614 aa		33.93	■■■■□ 3.02
VEGFA-228	ENST00000617771	KLHL34	Q8N239	644 aa		33.93	■■■■□ 3.02
VEGFA-228	ENST00000617771	UBR3	Q6ZT12	1888 aa		33.93	■■■■□ 3.02
VEGFA-228	ENST00000617771	ZNF831	Q5JPB2	1677 aa		33.91	■■■■□ 3.02
VEGFA-228	ENST00000617771	GNPAT	O15228	680 aa		33.91	■■■■□ 3.02
VEGFA-228	ENST00000617771	AMIGO3	Q86WK7	504 aa		33.91	■■■■□ 3.02
VEGFA-228	ENST00000617771	MTHFSD	Q2M296	383 aa	Known RBP	33.9	■■■■□ 3.02
VEGFA-228	ENST00000617771	SCN11A	Q9UI33	1791 aa		33.9	■■■■□ 3.02
VEGFA-228	ENST00000617771	SLC4A9	Q96Q91	983 aa		33.89	■■■■□ 3.02
VEGFA-228	ENST00000617771	SLC52A2	Q9HAB3	445 aa		33.87	■■■■□ 3.01
VEGFA-228	ENST00000617771	RNMT	O43148	476 aa	Known RBP	33.86	■■■■□ 3.01
VEGFA-228	ENST00000617771	PTCD1	O75127	700 aa	Known RBP	33.86	■■■■□ 3.01
VEGFA-228	ENST00000617771	SMIM5	Q71RC9	77 aa		33.86	■■■■□ 3.01
VEGFA-228	ENST00000617771	LGR6	Q9HBX8	967 aa		33.86	■■■■□ 3.01
VEGFA-228	ENST00000617771	YY1	P25490	414 aa		33.85	■■■■□ 3.01
VEGFA-228	ENST00000617771	PPP2R1A	P30153	589 aa		33.85	■■■■□ 3.01
VEGFA-228	ENST00000617771	RC3H1	Q5TC82	1133 aa	Known RBP	33.84	■■■■□ 3.01
VEGFA-228	ENST00000617771	RTCB	Q9Y3I0	505 aa	Known RBP	33.84	■■■■□ 3.01
VEGFA-228	ENST00000617771	CNTNAP4	Q9C0A0	1308 aa		33.83	■■■■□ 3.01
VEGFA-228	ENST00000617771	NUDC	Q9Y266	331 aa		33.83	■■■■□ 3.01
VEGFA-228	ENST00000617771	MRC1	P22897	1456 aa		33.82	■■■■□ 3.01
VEGFA-228	ENST00000617771	GAS2L2	Q8NHY3	880 aa		33.81	■■■■□ 3
VEGFA-228	ENST00000617771	COL5A3	P25940	1745 aa	Predicted RBP	33.81	■■■■□ 3
VEGFA-228	ENST00000617771	TRAPPC3L	Q5T215	181 aa		33.79	■■■■□ 3
VEGFA-228	ENST00000617771	ADAMTS7	Q9UKP4	1686 aa		33.78	■■■■□ 3
VEGFA-228	ENST00000617771	ADRA2B	P18089	450 aa		33.78	■■■■□ 3
VEGFA-228	ENST00000617771	GPR162	Q16538	588 aa		33.77	■■■■□ 3
VEGFA-228	ENST00000617771	NLGN2	Q8NFZ4	835 aa		33.77	■■■■□ 3
VEGFA-228	ENST00000617771	RPS6KA4	O75676	772 aa		33.76	■■■□□ 2.99
VEGFA-228	ENST00000617771	CD2AP	Q9Y5K6	639 aa		33.75	■■■□□ 2.99
VEGFA-228	ENST00000617771	GNAT3	A8MTJ3	354 aa		33.74	■■■□□ 2.99
VEGFA-228	ENST00000617771	PRKAR2B	P31323	418 aa		33.74	■■■□□ 2.99
VEGFA-228	ENST00000617771	RSPH6A	Q9H0K4	717 aa		33.74	■■■□□ 2.99
VEGFA-228	ENST00000617771	CIC	Q96RK0	1608 aa	Predicted RBP	33.74	■■■□□ 2.99
VEGFA-228	ENST00000617771	VIRMA	Q69YN4	1812 aa	Known RBP	33.73	■■■□□ 2.99
VEGFA-228	ENST00000617771	U2AF1L5	P0DN76	240 aa	Predicted RBP	33.72	■■■□□ 2.99
VEGFA-228	ENST00000617771	CRKL	P46109	303 aa	Known RBP	33.72	■■■□□ 2.99
VEGFA-228	ENST00000617771	U2AF1	Q01081	240 aa	Known RBP eCLIP	33.72	■■■□□ 2.99	2e-10	■□□□□ 9.4
VEGFA-228	ENST00000617771	SLC39A6	Q13433	755 aa		33.72	■■■□□ 2.99
VEGFA-228	ENST00000617771	ARHGEF1	Q92888	912 aa	Known RBP	33.72	■■■□□ 2.99
VEGFA-228	ENST00000617771	TJP1	Q07157	1748 aa		33.71	■■■□□ 2.99
VEGFA-228	ENST00000617771	RFC4	P35249	363 aa		33.71	■■■□□ 2.99
VEGFA-228	ENST00000617771	PELP1	Q8IZL8	1130 aa	Known RBP	33.71	■■■□□ 2.99
VEGFA-228	ENST00000617771	TEF	Q10587	303 aa		33.69	■■■□□ 2.98
VEGFA-228	ENST00000617771	NLGN1	Q8N2Q7	840 aa		33.68	■■■□□ 2.98
VEGFA-228	ENST00000617771	PHACTR3	Q96KR7	559 aa		33.68	■■■□□ 2.98
VEGFA-228	ENST00000617771	FCHSD2	O94868	740 aa		33.67	■■■□□ 2.98
VEGFA-228	ENST00000617771	DNAJC10	Q8IXB1	793 aa		33.67	■■■□□ 2.98
VEGFA-228	ENST00000617771	IL17RE	Q8NFR9	667 aa		33.67	■■■□□ 2.98
VEGFA-228	ENST00000617771	KCP	Q6ZWJ8	1503 aa		33.67	■■■□□ 2.98
VEGFA-228	ENST00000617771	MYH14	Q7Z406	1995 aa	Known RBP	33.66	■■■□□ 2.98
VEGFA-228	ENST00000617771	TTC5	Q8N0Z6	440 aa		33.66	■■■□□ 2.98
VEGFA-228	ENST00000617771	MMP10	P09238	476 aa		33.65	■■■□□ 2.98
VEGFA-228	ENST00000617771	VSIG10	Q8N0Z9	540 aa		33.65	■■■□□ 2.98
VEGFA-228	ENST00000617771	UTRN	P46939	3433 aa		33.63	■■■□□ 2.97
VEGFA-228	ENST00000617771	INTS5	Q6P9B9	1019 aa	Known RBP	33.63	■■■□□ 2.97
VEGFA-228	ENST00000617771	CCDC87	Q9NVE4	849 aa		33.63	■■■□□ 2.97
VEGFA-228	ENST00000617771	GYS1	P13807	737 aa		33.62	■■■□□ 2.97
VEGFA-228	ENST00000617771	C4A	P0C0L4	1744 aa		33.61	■■■□□ 2.97
VEGFA-228	ENST00000617771	CEMIP	Q8WUJ3	1361 aa		33.6	■■■□□ 2.97
VEGFA-228	ENST00000617771	CYP19A1	P11511	503 aa	Predicted RBP	33.6	■■■□□ 2.97
VEGFA-228	ENST00000617771	GRIN3B	O60391	1043 aa		33.59	■■■□□ 2.97
VEGFA-228	ENST00000617771	UBR2	Q8IWV8	1755 aa		33.59	■■■□□ 2.97
VEGFA-228	ENST00000617771	ZNF790	Q6PG37	636 aa		33.58	■■■□□ 2.97
VEGFA-228	ENST00000617771	RTF1	Q92541	710 aa	Known RBP	33.58	■■■□□ 2.97
VEGFA-228	ENST00000617771	USP42	Q9H9J4	1324 aa	Known RBP	33.57	■■■□□ 2.97
VEGFA-228	ENST00000617771	YBX3	P16989	372 aa	Known RBP eCLIP	33.57	■■■□□ 2.96
VEGFA-228	ENST00000617771	CHD4	Q14839	1912 aa		33.57	■■■□□ 2.96
VEGFA-228	ENST00000617771	SOS1	Q07889	1333 aa	Predicted RBP	33.56	■■■□□ 2.96
VEGFA-228	ENST00000617771	NEFM	P07197	916 aa		33.56	■■■□□ 2.96
VEGFA-228	ENST00000617771	SIPA1L3	O60292	1781 aa	Predicted RBP	33.56	■■■□□ 2.96
VEGFA-228	ENST00000617771	RALBP1	Q15311	655 aa		33.55	■■■□□ 2.96
VEGFA-228	ENST00000617771	SRP68	Q9UHB9	627 aa	Known RBP	33.55	■■■□□ 2.96
VEGFA-228	ENST00000617771	PARP3	Q9Y6F1	533 aa		33.55	■■■□□ 2.96
VEGFA-228	ENST00000617771	STARD3NL	O95772	234 aa		33.54	■■■□□ 2.96
VEGFA-228	ENST00000617771	DDX10	Q13206	875 aa	Known RBP	33.54	■■■□□ 2.96
VEGFA-228	ENST00000617771	ZNF496	Q96IT1	587 aa	Predicted RBP	33.54	■■■□□ 2.96
VEGFA-228	ENST00000617771	HEG1	Q9ULI3	1381 aa		33.53	■■■□□ 2.96
VEGFA-228	ENST00000617771	BTBD11	A6QL63	1104 aa		33.53	■■■□□ 2.96
VEGFA-228	ENST00000617771	ZBTB1	Q9Y2K1	713 aa		33.53	■■■□□ 2.96
VEGFA-228	ENST00000617771	ZPR1	O75312	459 aa		33.52	■■■□□ 2.96
VEGFA-228	ENST00000617771	TEX13A	Q9BXU3	409 aa	Predicted RBP	33.52	■■■□□ 2.96
VEGFA-228	ENST00000617771	HTATSF1	O43719	755 aa	Known RBP	33.51	■■■□□ 2.95
VEGFA-228	ENST00000617771	FMNL2	Q96PY5	1086 aa		33.51	■■■□□ 2.95
VEGFA-228	ENST00000617771	COL15A1	P39059	1388 aa		33.5	■■■□□ 2.95
VEGFA-228	ENST00000617771	FKBP8	Q14318	412 aa		33.5	■■■□□ 2.95

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