RNA–Protein interactions for RNA: ENST00000602723.5

CSMD1-217, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 10,938 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-217ENST00000602723 ZNF530Q6P9A1 599 aaPredicted RBP11.17□□□□□ -0.62
CSMD1-217ENST00000602723 KIF4BQ2VIQ3 1234 aa11.17□□□□□ -0.62
CSMD1-217ENST00000602723 HOOK3Q86VS8 718 aa11.16□□□□□ -0.62
CSMD1-217ENST00000602723 SPINK5Q9NQ38 1064 aaPredicted RBP11.16□□□□□ -0.62
CSMD1-217ENST00000602723 NKTRP30414 1462 aaKnown RBP11.16□□□□□ -0.62
CSMD1-217ENST00000602723 PRKCSHP14314 528 aaPredicted RBP11.16□□□□□ -0.62
CSMD1-217ENST00000602723 FERMT3Q86UX7 667 aa11.16□□□□□ -0.62
CSMD1-217ENST00000602723 CCDC83Q8IWF9 413 aa11.16□□□□□ -0.62
CSMD1-217ENST00000602723 FGFR1OPO95684 399 aaKnown RBP11.16□□□□□ -0.62
CSMD1-217ENST00000602723 PNISRQ8TF01 805 aaKnown RBP11.16□□□□□ -0.62
CSMD1-217ENST00000602723 ALS2CR12Q96Q35 445 aa11.16□□□□□ -0.62
CSMD1-217ENST00000602723 PPP4R3BQ5MIZ7 849 aa11.16□□□□□ -0.62
CSMD1-217ENST00000602723 TSG101Q99816 390 aa11.16□□□□□ -0.62
CSMD1-217ENST00000602723 PHAXQ9H814 394 aaKnown RBP11.16□□□□□ -0.62
CSMD1-217ENST00000602723 UBE4AQ14139 1066 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 STX1AQ16623 288 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 BCCIPQ9P287 314 aaKnown RBP eCLIP11.15□□□□□ -0.62
CSMD1-217ENST00000602723 NEMFO60524 1076 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 RBM5P52756 815 aaKnown RBP eCLIP11.15□□□□□ -0.62
CSMD1-217ENST00000602723 URI1O94763 535 aaPredicted RBP11.15□□□□□ -0.62
CSMD1-217ENST00000602723 HFM1A2PYH4 1435 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 CTAGE5O15320 804 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 CCDC97Q96F63 343 aaPredicted RBP11.15□□□□□ -0.62
CSMD1-217ENST00000602723 CABP4P57796 275 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 CACNA2D4Q7Z3S7 1137 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 EFCAB5A4FU69 1503 aa11.15□□□□□ -0.62
CSMD1-217ENST00000602723 CTNNBL1Q8WYA6 563 aaPredicted RBP11.15□□□□□ -0.62
CSMD1-217ENST00000602723 GTF2F1P35269 517 aaKnown RBP eCLIP11.15□□□□□ -0.63
CSMD1-217ENST00000602723 AIDAQ96BJ3 306 aa11.15□□□□□ -0.63
CSMD1-217ENST00000602723 DNA2P51530 1060 aa11.15□□□□□ -0.63
CSMD1-217ENST00000602723 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.15□□□□□ -0.63
CSMD1-217ENST00000602723 TATP17735 454 aaPredicted RBP11.14□□□□□ -0.63
CSMD1-217ENST00000602723 GSDMDP57764 484 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 IPO4Q8TEX9 1081 aaKnown RBP11.14□□□□□ -0.63
CSMD1-217ENST00000602723 PRAM1Q96QH2 718 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 LRP2BPQ9P2M1 347 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 TRERF1Q96PN7 1200 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 TNNT1P13805 278 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 MX1P20591 662 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 TIAM1Q13009 1591 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 SPATA24Q86W54 205 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 ANKRD30BQ9BXX2 1392 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 KIAA1107Q9UPP5 1409 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 MACROD2A1Z1Q3 448 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 GON4LQ3T8J9 2241 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 ZHX1Q9UKY1 873 aaPredicted RBP11.14□□□□□ -0.63
CSMD1-217ENST00000602723 TMEM57Q8N5G2 664 aa11.14□□□□□ -0.63
CSMD1-217ENST00000602723 MCM5P33992 734 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 GPATCH11Q8N954 259 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 TAOK3Q9H2K8 898 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 STRN4Q9NRL3 753 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 TRMT1Q9NXH9 659 aaKnown RBP11.13□□□□□ -0.63
CSMD1-217ENST00000602723 MPHOSPH10O00566 681 aaKnown RBP11.13□□□□□ -0.63
CSMD1-217ENST00000602723 ZFP91Q96JP5 570 aaPredicted RBP11.13□□□□□ -0.63
CSMD1-217ENST00000602723 C8orf76Q96K31 380 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 DYNC1I1O14576 645 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 PAFAH1B1P43034 410 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 DNAI2Q9GZS0 605 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 CEP126Q9P2H0 1117 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 USO1O60763 962 aaKnown RBP11.13□□□□□ -0.63
CSMD1-217ENST00000602723 USP5P45974 858 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 SMARCC1Q92922 1105 aaPredicted RBP11.13□□□□□ -0.63
CSMD1-217ENST00000602723 YEATS4O95619 227 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 PRPF40BQ6NWY9 871 aaKnown RBP11.13□□□□□ -0.63
CSMD1-217ENST00000602723 BTBD11A6QL63 1104 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 HLTFQ14527 1009 aaKnown RBP eCLIP11.13□□□□□ -0.63
CSMD1-217ENST00000602723 CKAP2LQ8IYA6 745 aa11.13□□□□□ -0.63
CSMD1-217ENST00000602723 IDH1O75874 414 aaKnown RBP11.12□□□□□ -0.63
CSMD1-217ENST00000602723 TNIP1Q15025 636 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 ESCO1Q5FWF5 840 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 GIGYF2Q6Y7W6 1299 aaKnown RBP11.12□□□□□ -0.63
CSMD1-217ENST00000602723 IL1RAPL2Q9NP60 686 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 NAA15Q9BXJ9 866 aaKnown RBP11.12□□□□□ -0.63
CSMD1-217ENST00000602723 SPECC1LQ69YQ0 1117 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 NUTM1Q86Y26 1132 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 CFAP70Q5T0N1 1121 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 BBXQ8WY36 941 aaPredicted RBP11.12□□□□□ -0.63
CSMD1-217ENST00000602723 UBA5Q9GZZ9 404 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 ATAD2BQ9ULI0 1458 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 FAM135AQ9P2D6 1515 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 CCDC196A0A1B0GTZ2 297 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 USP25Q9UHP3 1055 aa11.12□□□□□ -0.63
CSMD1-217ENST00000602723 CEP112Q8N8E3 955 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 TNPO1Q92973 898 aaKnown RBP11.11□□□□□ -0.63
CSMD1-217ENST00000602723 EXOC6BQ9Y2D4 811 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 LMAN1P49257 510 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 SNW1Q13573 536 aaKnown RBP11.11□□□□□ -0.63
CSMD1-217ENST00000602723 CDK19Q9BWU1 502 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 RAB11FIP3O75154 756 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 MAATS1Q7Z4T9 603 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 CCDC150Q8NCX0 1101 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 TMC6Q7Z403 805 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 GOLGA6L9A6NEM1 432 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 ADCY5O95622 1261 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 SPECC1Q5M775 1068 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 TMX1Q9H3N1 280 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 ZNF287Q9HBT7 754 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 PTPN23Q9H3S7 1636 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 SPG7Q9UQ90 795 aa11.11□□□□□ -0.63
CSMD1-217ENST00000602723 NSD3Q9BZ95 1437 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms