RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 SLC52A2Q9HAB3 445 aa26.01■■□□□ 1.75
SHKBP1-214ENST00000597396 SIPA1L3O60292 1781 aaPredicted RBP26■■□□□ 1.75
SHKBP1-214ENST00000597396 NFE2L2Q16236 605 aa26■■□□□ 1.75
SHKBP1-214ENST00000597396 SLC27A3Q5K4L6 730 aa26■■□□□ 1.75
SHKBP1-214ENST00000597396 TAF1LQ8IZX4 1826 aa26■■□□□ 1.75
SHKBP1-214ENST00000597396 RUNDC1Q96C34 613 aa25.99■■□□□ 1.75
SHKBP1-214ENST00000597396 ASAP1Q9ULH1 1129 aa25.99■■□□□ 1.75
SHKBP1-214ENST00000597396 TEFQ10587 303 aa25.98■■□□□ 1.75
SHKBP1-214ENST00000597396 IL17REQ8NFR9 667 aa25.98■■□□□ 1.75
SHKBP1-214ENST00000597396 ATG3Q9NT62 314 aa25.98■■□□□ 1.75
SHKBP1-214ENST00000597396 CCNL1Q9UK58 526 aaPredicted RBP25.98■■□□□ 1.75
SHKBP1-214ENST00000597396 C5P01031 1676 aa25.97■■□□□ 1.75
SHKBP1-214ENST00000597396 PAPPAQ13219 1627 aa25.96■■□□□ 1.75
SHKBP1-214ENST00000597396 HTATSF1O43719 755 aaKnown RBP25.96■■□□□ 1.75
SHKBP1-214ENST00000597396 DIEXFQ68CQ4 756 aaKnown RBP25.96■■□□□ 1.75
SHKBP1-214ENST00000597396 LRRC4BQ9NT99 713 aa25.96■■□□□ 1.75
SHKBP1-214ENST00000597396 KCNQ4P56696 695 aa25.95■■□□□ 1.74
SHKBP1-214ENST00000597396 CEMIPQ8WUJ3 1361 aa25.95■■□□□ 1.74
SHKBP1-214ENST00000597396 MCM10Q7L590 875 aa25.94■■□□□ 1.74
SHKBP1-214ENST00000597396 DCTN1Q14203 1278 aa25.93■■□□□ 1.74
SHKBP1-214ENST00000597396 PNISRQ8TF01 805 aaKnown RBP25.93■■□□□ 1.74
SHKBP1-214ENST00000597396 LOC102724428A0A0B4J2F2 783 aa25.92■■□□□ 1.74
SHKBP1-214ENST00000597396 TMPOP42166 694 aaKnown RBP25.92■■□□□ 1.74
SHKBP1-214ENST00000597396 SIK1P57059 783 aa25.92■■□□□ 1.74
SHKBP1-214ENST00000597396 RIPK4P57078 832 aa25.92■■□□□ 1.74
SHKBP1-214ENST00000597396 RBM42Q9BTD8 480 aaKnown RBP25.92■■□□□ 1.74
SHKBP1-214ENST00000597396 ANO8Q9HCE9 1232 aaPredicted RBP25.92■■□□□ 1.74
SHKBP1-214ENST00000597396 STK32BQ9NY57 414 aa25.92■■□□□ 1.74
SHKBP1-214ENST00000597396 ZNF831Q5JPB2 1677 aa25.91■■□□□ 1.74
SHKBP1-214ENST00000597396 SPON1Q9HCB6 807 aa25.91■■□□□ 1.74
SHKBP1-214ENST00000597396 UBR2Q8IWV8 1755 aa25.9■■□□□ 1.74
SHKBP1-214ENST00000597396 HMGB2P26583 209 aaKnown RBP25.9■■□□□ 1.74
SHKBP1-214ENST00000597396 NEUROD2Q15784 382 aa25.9■■□□□ 1.74
SHKBP1-214ENST00000597396 PPP1R1BQ9UD71 204 aaPredicted RBP25.9■■□□□ 1.74
SHKBP1-214ENST00000597396 RRP7AQ9Y3A4 280 aaKnown RBP25.9■■□□□ 1.74
SHKBP1-214ENST00000597396 TUBGCP6Q96RT7 1819 aa25.89■■□□□ 1.74
SHKBP1-214ENST00000597396 ATP6V1AP38606 617 aa25.89■■□□□ 1.74
SHKBP1-214ENST00000597396 LMOD3Q0VAK6 560 aa25.89■■□□□ 1.74
SHKBP1-214ENST00000597396 SLC39A6Q13433 755 aa25.89■■□□□ 1.74
SHKBP1-214ENST00000597396 PTCD1O75127 700 aaKnown RBP25.88■■□□□ 1.73
SHKBP1-214ENST00000597396 C4BP0C0L5 1744 aa25.88■■□□□ 1.73
SHKBP1-214ENST00000597396 SLC15A2Q16348 729 aa25.87■■□□□ 1.73
SHKBP1-214ENST00000597396 TTC5Q8N0Z6 440 aa25.87■■□□□ 1.73
SHKBP1-214ENST00000597396 QSER1Q2KHR3 1735 aa25.87■■□□□ 1.73
SHKBP1-214ENST00000597396 COL5A3P25940 1745 aaPredicted RBP25.86■■□□□ 1.73
SHKBP1-214ENST00000597396 TJP1Q07157 1748 aa25.85■■□□□ 1.73
SHKBP1-214ENST00000597396 BTBD11A6QL63 1104 aa25.85■■□□□ 1.73
SHKBP1-214ENST00000597396 FAM9BQ8IZU0 186 aa25.85■■□□□ 1.73
SHKBP1-214ENST00000597396 KCPQ6ZWJ8 1503 aa25.84■■□□□ 1.73
SHKBP1-214ENST00000597396 APAF1O14727 1248 aa25.84■■□□□ 1.73
SHKBP1-214ENST00000597396 ZNF827Q17R98 1081 aa25.84■■□□□ 1.73
SHKBP1-214ENST00000597396 THUMPD2Q9BTF0 503 aaKnown RBP25.84■■□□□ 1.73
SHKBP1-214ENST00000597396 CICQ96RK0 1608 aaPredicted RBP25.84■■□□□ 1.73
SHKBP1-214ENST00000597396 ITPK1Q13572 414 aa25.83■■□□□ 1.73
SHKBP1-214ENST00000597396 TAF7Q15545 349 aaPredicted RBP25.83■■□□□ 1.73
SHKBP1-214ENST00000597396 AKT1S1Q96B36 256 aa25.83■■□□□ 1.73
SHKBP1-214ENST00000597396 SLC4A9Q96Q91 983 aa25.83■■□□□ 1.73
SHKBP1-214ENST00000597396 KDM3BQ7LBC6 1761 aa25.82■■□□□ 1.72
SHKBP1-214ENST00000597396 CCER2I3L3R5 266 aa25.82■■□□□ 1.72
SHKBP1-214ENST00000597396 ZNF790Q6PG37 636 aa25.82■■□□□ 1.72
SHKBP1-214ENST00000597396 UBR3Q6ZT12 1888 aa25.81■■□□□ 1.72
SHKBP1-214ENST00000597396 LINC00116Q8NCU8 138 aa25.81■■□□□ 1.72
SHKBP1-214ENST00000597396 TFCP2L1Q9NZI6 479 aa25.81■■□□□ 1.72
SHKBP1-214ENST00000597396 CASZ1Q86V15 1759 aa25.8■■□□□ 1.72
SHKBP1-214ENST00000597396 AK7Q96M32 723 aa25.8■■□□□ 1.72
SHKBP1-214ENST00000597396 PDGFDQ9GZP0 370 aaPredicted RBP25.8■■□□□ 1.72
SHKBP1-214ENST00000597396 MYH14Q7Z406 1995 aaKnown RBP25.79■■□□□ 1.72
SHKBP1-214ENST00000597396 TRIM35Q9UPQ4 493 aa25.79■■□□□ 1.72
SHKBP1-214ENST00000597396 ZBTB7AO95365 584 aa25.78■■□□□ 1.72
SHKBP1-214ENST00000597396 KCNQ3O43525 872 aa25.77■■□□□ 1.72
SHKBP1-214ENST00000597396 ZNF496Q96IT1 587 aaPredicted RBP25.77■■□□□ 1.72
SHKBP1-214ENST00000597396 FMNL2Q96PY5 1086 aa25.77■■□□□ 1.72
SHKBP1-214ENST00000597396 DNAJC10Q8IXB1 793 aa25.76■■□□□ 1.71
SHKBP1-214ENST00000597396 MIER1Q8N108 512 aa25.76■■□□□ 1.71
SHKBP1-214ENST00000597396 MIS18AQ9NYP9 233 aa25.76■■□□□ 1.71
SHKBP1-214ENST00000597396 HEG1Q9ULI3 1381 aa25.76■■□□□ 1.71
SHKBP1-214ENST00000597396 VSIG10Q8N0Z9 540 aa25.75■■□□□ 1.71
SHKBP1-214ENST00000597396 SENP3-EIF4A1A0A087X0R7 540 aa25.74■■□□□ 1.71
SHKBP1-214ENST00000597396 PNPLA7Q6ZV29 1317 aa25.73■■□□□ 1.71
SHKBP1-214ENST00000597396 CNTNAP4Q9C0A0 1308 aa25.73■■□□□ 1.71
SHKBP1-214ENST00000597396 GNPATO15228 680 aa25.73■■□□□ 1.71
SHKBP1-214ENST00000597396 ATF5Q9Y2D1 282 aaPredicted RBP25.73■■□□□ 1.71
SHKBP1-214ENST00000597396 DCAF8L1A6NGE4 600 aa25.72■■□□□ 1.71
SHKBP1-214ENST00000597396 RC3H1Q5TC82 1133 aaKnown RBP25.72■■□□□ 1.71
SHKBP1-214ENST00000597396 TSPYL4Q9UJ04 414 aa25.72■■□□□ 1.71
SHKBP1-214ENST00000597396 MSH5O43196 834 aa25.71■■□□□ 1.71
SHKBP1-214ENST00000597396 CRKLP46109 303 aaKnown RBP25.71■■□□□ 1.71
SHKBP1-214ENST00000597396 FLAD1Q8NFF5 587 aa25.71■■□□□ 1.71
SHKBP1-214ENST00000597396 LAS1LQ9Y4W2 734 aaKnown RBP25.71■■□□□ 1.71
SHKBP1-214ENST00000597396 LAMB4A4D0S4 1761 aa25.7■■□□□ 1.7
SHKBP1-214ENST00000597396 PHF14O94880 888 aa25.7■■□□□ 1.7
SHKBP1-214ENST00000597396 TEX13AQ9BXU3 409 aaPredicted RBP25.7■■□□□ 1.7
SHKBP1-214ENST00000597396 PTGER2P43116 358 aa25.69■■□□□ 1.7
SHKBP1-214ENST00000597396 CALD1Q05682 793 aaKnown RBP25.69■■□□□ 1.7
SHKBP1-214ENST00000597396 BABAM1Q9NWV8 329 aa25.69■■□□□ 1.7
SHKBP1-214ENST00000597396 RTCBQ9Y3I0 505 aaKnown RBP25.69■■□□□ 1.7
SHKBP1-214ENST00000597396 STARD3NLO95772 234 aa25.68■■□□□ 1.7
SHKBP1-214ENST00000597396 CYP19A1P11511 503 aaPredicted RBP25.68■■□□□ 1.7
SHKBP1-214ENST00000597396 SSFA2P28290 1259 aa25.68■■□□□ 1.7
SHKBP1-214ENST00000597396 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP25.67■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 149.1 ms